FFCP PHASE1:Hg19::chr17:59477233..59477263,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr17:59477233..59477263,+
|short_description=p1@TBX2
|description=CAGE_peak_1_at_TBX2_5end
|association_with_transcript=0bp_to_ENST00000240328,ENST00000424871,...") |
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(11 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=6909 | |EntrezGene=6909 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11597 | |HGNC=11597 | ||
|TSSclassifier=strong | |||
|UniProt=Q13207 | |UniProt=Q13207 | ||
|association_with_transcript=0bp_to_ENST00000240328,ENST00000424871,NM_005994,uc002ize.2,uc002izg.2,uc010wox.1_5end | |||
|cluster_id=chr17:59477233..59477263,+ | |||
|coexpression_cluster_id=C2425 | |||
|description=CAGE_peak_1_at_TBX2_5end | |||
|id=chr17:59477233..59477263,+ | |||
|ontology_enrichment_celltype=CL:0000055!3.00e-29!180;CL:0000183!7.40e-15!59;CL:0000680!1.13e-14!57;CL:0000056!1.13e-14!57;CL:0000355!1.13e-14!57;CL:0000187!3.64e-14!54;CL:0000057!8.49e-13!75;CL:0000192!6.39e-12!42;CL:0000514!6.39e-12!42;CL:0000393!5.95e-11!60;CL:0000211!5.95e-11!60;CL:0000359!2.11e-07!32 | |||
|ontology_enrichment_celltype_v019=CL:0000192;8.40e-09;43!CL:0000187;1.54e-08;55!CL:0000393;5.17e-07;61!CL:0000211;5.17e-07;61 | |||
|ontology_enrichment_celltype_v019_2=CL:0000680,2.68e-15,58;CL:0000056,2.68e-15,58;CL:0000355,2.68e-15,58;CL:0000187,9.18e-15,55;CL:0000057,1.11e-13,76;CL:0000192,2.10e-12,43;CL:0000514,2.10e-12,43;CL:0000393,9.86e-12,61;CL:0000211,9.86e-12,61;CL:0000359,3.73e-07,32 | |||
|ontology_enrichment_development_v019=CL:0000514;8.40e-09;43!CL:0000355;1.20e-08;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000475!2.03e-22!365;UBERON:0000481!2.01e-21!347;UBERON:0000914!9.42e-19!83;UBERON:0002329!9.42e-19!83;UBERON:0003077!9.42e-19!83;UBERON:0003059!9.42e-19!83;UBERON:0007282!9.42e-19!83;UBERON:0009618!9.42e-19!83;UBERON:0007285!9.42e-19!83;UBERON:0002100!7.54e-18!216;UBERON:0004290!2.79e-17!70;UBERON:0005256!7.39e-17!143;UBERON:0002385!7.42e-16!63;UBERON:0001015!7.42e-16!63;UBERON:0000383!7.42e-16!63;UBERON:0001134!2.98e-15!61;UBERON:0002036!2.98e-15!61;UBERON:0003082!2.98e-15!61;UBERON:0003104!5.13e-15!238;UBERON:0009142!5.13e-15!238;UBERON:0000486!3.96e-14!82;UBERON:0000468!2.99e-10!659;UBERON:0000119!3.97e-10!312;UBERON:0000483!7.17e-10!309;UBERON:0000477!9.95e-08!286;UBERON:0003102!1.26e-07!95;UBERON:0000467!7.38e-07!625 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003104,5.80e-20,160;UBERON:0009142,5.80e-20,160;UBERON:0007524,2.41e-18,73;UBERON:0002329,4.91e-18,71;UBERON:0003059,4.91e-18,71;UBERON:0007282,4.91e-18,71;UBERON:0004290,4.91e-18,71;UBERON:0009618,4.91e-18,71;UBERON:0003077,6.38e-18,72;UBERON:0007285,6.38e-18,72;UBERON:0007503,5.34e-17,78;UBERON:0002385,1.54e-16,64;UBERON:0001015,1.54e-16,64;UBERON:0000383,1.54e-16,64;UBERON:0005256,3.94e-16,122;UBERON:0001134,6.59e-16,62;UBERON:0002036,6.59e-16,62;UBERON:0003082,6.59e-16,62;UBERON:0002100,1.41e-15,199;UBERON:0000486,9.02e-15,83;UBERON:0000119,2.08e-10,309;UBERON:0000483,3.85e-10,306;UBERON:0000490,4.22e-08,148;UBERON:0003102,9.09e-07,99 | |||
|phase1_expression=17.2594460307029,12.203729861786,15.6459388546528,6.00439790118782,5.36353313312745,1.74467704820074,10.1319951267324,42.3252315195977,9.92505387159386,27.7679348246705,15.3516256953934,0,0.527533956456907,6.06455129504228,10.6047160232933,2.6893005858071,1.80808358407193,0.730310090387373,0.487932798790507,1.84681587115182,0.816002764977012,2.5076377718247,1.14494394852423,1.23186982565596,2.25976751270645,0,0.0821005894499457,0,0,0,1.54816123316076,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.290209238628584,0,0,0,0,0,3.63239701580021,0,0,0,0,0,0.112328631146495,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.221533894583621,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,17.0664806419773,6.70700859703636,3.58015173161885,25.6621798193042,55.6485080805837,56.9246819516037,7.15757352345989,15.0856809793817,17.7725456268448,19.2904575792431,12.1212004256514,37.0015888281038,0,0,0.324547393654683,0,0,0,0,0,0,5.16140757063675,0,0,0,0,0,0,1.42306505074684,0.33472061276467,0,0,0.24406205754817,0,0,0,0,0,0,0,0.549605231791222,0,0,0,3.97577561356255,4.17880688493113,2.25095607382472,8.89193524321323,10.9947198481491,6.16745360156538,5.33744978648525,2.22000793575444,9.02512002659322,4.98429486657846,2.94231425604226,10.8977347904351,6.91411109375999,2.81185718200556,39.6443297574507,33.0873656495781,43.0412199989187,6.92863541998213,13.1117084938187,11.6574169562866,26.744196434391,45.5715317226659,21.3884367033834,97.4162342971284,109.786516599679,10.9219363432563,28.7447256726495,34.6772394745376,49.6720523891698,11.3596287348515,42.1418516045604,20.8411701143333,90.7437875795845,3.74326204428069,8.07253360599879,4.05759038755278,7.2056846394251,9.60291507470087,3.7098910525838,7.9868567414145,6.14185625894246,4.55696097051419,1.94874010322397,4.29137416214995,4.69454483075727,3.23292113637624,7.4552014428489,7.2541510723901,21.195074038811,0.386521706326594,0,0,0,0,3.36962434321603,3.10983165046111,0.504641701751257,0,1.56449532329816,1.28648187638577,29.0083334840209,16.7172454091512,12.271951188383,0.828147600278907,0.168584690078102,1.44606617930089,1.32352767278873,0.653638332277218,0.949082476444386,0.269662616320329,0.392442930250692,0.38474715694639,0,5.60967095213783,13.9935163852676,7.3504355692771,0,0,10.0434284135839,0,2.09080345523293,7.72055146343365,0,0,0,0.0925884451585296,12.7065239071027,44.7171957670219,8.6598805215164,38.9526160716258,10.3319650927523,0.866198686566443,0.925971025153221,0,146.978018020425,157.961453825457,0,0,0,0,0.335964256397719,0,0.447792613514241,1.16253575405585,1.53353071666084,0,0,0.207328115540772,0.288239906833923,0.12624243342638,15.8744735730423,96.6430716662443,128.939191931052,70.1397028693091,72.3905548631398,50.1572906599342,71.4566081576446,8.52196241024741,1.74384027533312,9.31396229926065,15.5126058909333,71.5312891703765,57.480587173808,26.593811658487,22.8816361205005,52.9847190980013,25.5328437641901,55.6822354143648,42.607442110128,51.5490525121871,15.6415663988346,41.6942315895981,35.183802925512,36.4297861549377,1.20575750823834,0,1.3996218765488,0,0,0,12.7001173410539,8.04033550838797,4.27910715122155,10.2794727733981,10.4792924500696,6.80431660311603,0,0,0,0,7.87693335089637,0,1.54657762555539,1.17261385734044,0,0,0,0,11.9010746967566,9.50323990013386,16.8184314693836,10.3985430765404,13.9174611261786,8.51593041183247,11.7141414992713,15.0473049863859,34.1111256083977,19.6598835455759,12.6202863721733,18.9900243597954,54.3022590425518,70.2926155291239,49.7557964525741,0,0,0,0,9.98612637062982,1.5119514666484,7.19512642674453,4.45039722535381,6.45518217196069,4.86928767171664,3.58195074346692,5.46903331888265,5.93672265779964,29.1456321287019,23.6157094666459,41.1457051629184,29.0782480342828,42.9978400301849,1.45031339509947,0.200506470303285,0,32.7221177269129,67.1916409944786,42.7465592767723,5.41439535488894,2.84956747286335,3.13739907670742,0,0.316654886678627,0,0,0.863663664408557,9.25363516141736,10.8378575017541,8.52872615553251,3.82314409567557,8.31076008928724,1.11937377361089,0,0,0.256450125116389,2.62411716559765,0.325378394664303,31.530549564203,11.5377525671113,11.5513299888823,6.3169209179579,0,1.6068392984416,19.044131503548,12.9400838376301,11.0522645802813,17.5052447055354,6.33779444722814,12.6164523705379,21.5623367362735,3.73934549716297,0.330569830721956,0,0,0.10115778085555,14.4102120282159,7.55549632393536,19.5170435644968,4.92853728281742,11.7107326669745,21.7483248018768,6.4863476686372,3.14874750832381,11.9090678195094,15.8189712359363,8.76898892049594,90.3319203329009,91.1510044512251,21.3196176110378,16.4839214441838,29.3192105860803,17.0212958436354,15.786861914322,16.7811459705852,14.2659289055707,17.2715967057982,46.8128389526007,13.8916689089832,8.45201174054043,22.9319851165416,26.3014103433906,10.1707304958219,9.92457618383023,10.6150236038595,17.0995845248967,44.5657161385349,80.0191597496892,16.0299197800536,14.2518809125885,17.7468229595312,19.0737098431389,12.47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|phase1_expression=17.2594460307029,12.203729861786,15.6459388546528,6.00439790118782,5.36353313312745,1.74467704820074,10.1319951267324,42.3252315195977,9.92505387159386,27.7679348246705,15.3516256953934,0,0.527533956456907,6.06455129504228,10.6047160232933,2.6893005858071,1.80808358407193,0.730310090387373,0.487932798790507,1.84681587115182,0.816002764977012,2.5076377718247,1.14494394852423,1.23186982565596,2.25976751270645,0,0.0821005894499457,0,0,0,1.54816123316076,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.290209238628584,0,0,0,0,0,3.63239701580021,0,0,0,0,0,0.112328631146495,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.221533894583621,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,17.0664806419773,6.70700859703636,3.58015173161885,25.6621798193042,55.6485080805837,56.9246819516037,7.15757352345989,15.0856809793817,17.7725456268448,19.2904575792431,12.1212004256514,37.0015888281038,0,0,0.324547393654683,0,0,0,0,0,0,5.16140757063675,0,0,0,0,0,0,1.42306505074684,0.33472061276467,0,0,0.24406205754817,0,0,0,0,0,0,0,0.549605231791222,0,0,0,3.97577561356255,4.17880688493113,2.25095607382472,8.89193524321323,10.9947198481491,6.16745360156538,5.33744978648525,2.22000793575444,9.02512002659322,4.98429486657846,2.94231425604226,10.8977347904351,6.91411109375999,2.81185718200556,39.6443297574507,33.0873656495781,43.0412199989187,6.92863541998213,13.1117084938187,11.6574169562866,26.744196434391,45.5715317226659,21.3884367033834,97.4162342971284,109.786516599679,10.9219363432563,28.7447256726495,34.6772394745376,49.6720523891698,11.3596287348515,42.1418516045604,20.8411701143333,90.7437875795845,3.74326204428069,8.07253360599879,4.05759038755278,7.2056846394251,9.60291507470087,3.7098910525838,7.9868567414145,6.14185625894246,4.55696097051419,1.94874010322397,4.29137416214995,4.69454483075727,3.23292113637624,7.4552014428489,7.2541510723901,21.195074038811,0.386521706326594,0,0,0,0,3.36962434321603,3.10983165046111,0.504641701751257,0,1.56449532329816,1.28648187638577,29.0083334840209,16.7172454091512,12.271951188383,0.828147600278907,0.168584690078102,1.44606617930089,1.32352767278873,0.653638332277218,0.949082476444386,0.269662616320329,0.392442930250692,0.38474715694639,0,5.60967095213783,13.9935163852676,7.3504355692771,0,0,10.0434284135839,0,2.09080345523293,7.72055146343365,0,0,0,0.0925884451585296,12.7065239071027,44.7171957670219,8.6598805215164,38.9526160716258,10.3319650927523,0.866198686566443,0.925971025153221,0,146.978018020425,157.961453825457,0,0,0,0,0.335964256397719,0,0.447792613514241,1.16253575405585,1.53353071666084,0,0,0.207328115540772,0.288239906833923,0.12624243342638,15.8744735730423,96.6430716662443,128.939191931052,70.1397028693091,72.3905548631398,50.1572906599342,71.4566081576446,8.52196241024741,1.74384027533312,9.31396229926065,15.5126058909333,71.5312891703765,57.480587173808,26.593811658487,22.8816361205005,52.9847190980013,25.5328437641901,55.6822354143648,42.607442110128,51.5490525121871,15.6415663988346,41.6942315895981,35.183802925512,36.4297861549377,1.20575750823834,0,1.3996218765488,0,0,0,12.7001173410539,8.04033550838797,4.27910715122155,10.2794727733981,10.4792924500696,6.80431660311603,0,0,0,0,7.87693335089637,0,1.54657762555539,1.17261385734044,0,0,0,0,11.9010746967566,9.50323990013386,16.8184314693836,10.3985430765404,13.9174611261786,8.51593041183247,11.7141414992713,15.0473049863859,34.1111256083977,19.6598835455759,12.6202863721733,18.9900243597954,54.3022590425518,70.2926155291239,49.7557964525741,0,0,0,0,9.98612637062982,1.5119514666484,7.19512642674453,4.45039722535381,6.45518217196069,4.86928767171664,3.58195074346692,5.46903331888265,5.93672265779964,29.1456321287019,23.6157094666459,41.1457051629184,29.0782480342828,42.9978400301849,1.45031339509947,0.200506470303285,0,32.7221177269129,67.1916409944786,42.7465592767723,5.41439535488894,2.84956747286335,3.13739907670742,0,0.316654886678627,0,0,0.863663664408557,9.25363516141736,10.8378575017541,8.52872615553251,3.82314409567557,8.31076008928724,1.11937377361089,0,0,0.256450125116389,2.62411716559765,0.325378394664303,31.530549564203,11.5377525671113,11.5513299888823,6.3169209179579,0,1.6068392984416,19.044131503548,12.9400838376301,11.0522645802813,17.5052447055354,6.33779444722814,12.6164523705379,21.5623367362735,3.73934549716297,0.330569830721956,0,0,0.10115778085555,14.4102120282159,7.55549632393536,19.5170435644968,4.92853728281742,11.7107326669745,21.7483248018768,6.4863476686372,3.14874750832381,11.9090678195094,15.8189712359363,8.76898892049594,90.3319203329009,91.1510044512251,21.3196176110378,16.4839214441838,29.3192105860803,17.0212958436354,15.786861914322,16.7811459705852,14.2659289055707,17.2715967057982,46.8128389526007,13.8916689089832,8.45201174054043,22.9319851165416,26.3014103433906,10.1707304958219,9.92457618383023,10.6150236038595,17.0995845248967,44.5657161385349,80.0191597496892,16.0299197800536,14.2518809125885,17.7468229595312,19.0737098431389,12.47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| ||
|short_description=p1@TBX2 | |||
}} | }} |
Latest revision as of 15:17, 16 September 2015
Short description: | p1@TBX2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_TBX2_5end |
Coexpression cluster: | C2425_MCF7_Melanocyte_normal_Fibroblast_rhabdomyosarcoma_Smooth_lung |
Association with transcript: | 0bp_to_ENST00000240328, ENST00000424871, NM_005994, uc002ize.2, uc002izg.2, uc010wox.1_5end |
EntrezGene: | TBX2 |
HGNC: | 11597 |
UniProt: | Q13207 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
muscle precursor cell | 2.68e-15 | 58 |
myoblast | 2.68e-15 | 58 |
multi-potent skeletal muscle stem cell | 2.68e-15 | 58 |
muscle cell | 9.18e-15 | 55 |
fibroblast | 1.11e-13 | 76 |
smooth muscle cell | 2.10e-12 | 43 |
smooth muscle myoblast | 2.10e-12 | 43 |
electrically responsive cell | 9.86e-12 | 61 |
electrically active cell | 9.86e-12 | 61 |
vascular associated smooth muscle cell | 3.73e-07 | 32 |
Ontology term | p-value | n |
---|---|---|
mesenchyme | 5.80e-20 | 160 |
entire embryonic mesenchyme | 5.80e-20 | 160 |
dense mesenchyme tissue | 2.41e-18 | 73 |
somite | 4.91e-18 | 71 |
presomitic mesoderm | 4.91e-18 | 71 |
presumptive segmental plate | 4.91e-18 | 71 |
dermomyotome | 4.91e-18 | 71 |
trunk paraxial mesoderm | 4.91e-18 | 71 |
paraxial mesoderm | 6.38e-18 | 72 |
presumptive paraxial mesoderm | 6.38e-18 | 72 |
epithelial vesicle | 5.34e-17 | 78 |
muscle tissue | 1.54e-16 | 64 |
musculature | 1.54e-16 | 64 |
musculature of body | 1.54e-16 | 64 |
trunk mesenchyme | 3.94e-16 | 122 |
skeletal muscle tissue | 6.59e-16 | 62 |
striated muscle tissue | 6.59e-16 | 62 |
myotome | 6.59e-16 | 62 |
trunk | 1.41e-15 | 199 |
multilaminar epithelium | 9.02e-15 | 83 |
cell layer | 2.08e-10 | 309 |
epithelium | 3.85e-10 | 306 |
unilaminar epithelium | 4.22e-08 | 148 |
surface structure | 9.09e-07 | 99 |