FFCP PHASE1:Hg19::chr2:11682790..11682822,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(2 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=9687 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=24885 | |||
|TSSclassifier=strong | |||
|UniProt=F8W6E5,Q6IPM5 | |||
|association_with_transcript=0bp_to_ENST00000389825,uc002rbm.2_5end | |||
|cluster_id=chr2:11682790..11682822,+ | |||
|coexpression_cluster_id=C194 | |||
|description=CAGE_peak_4_at_GREB1_5end | |||
|id=chr2:11682790..11682822,+ | |||
|ontology_enrichment_celltype=CL:0002541!9.31e-13!3 | |||
|ontology_enrichment_celltype_v019=CL:0000182;6.34e-09;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000182,6.34e-09,12 | |||
|ontology_enrichment_development_v019=UBERON:0009117;8.83e-18;10!UBERON:0005564;8.83e-18;10!UBERON:0004161;2.75e-16;11!UBERON:0009497;7.97e-14;13!UBERON:0006242;4.31e-12;1!UBERON:0007297;9.54e-07;2 | |||
|ontology_enrichment_disease=DOID:5093!1.40e-10!4;DOID:1612!1.40e-10!4 | |||
|ontology_enrichment_disease_v019=DOID:5093;2.40e-26;4!DOID:1612;2.40e-26;4!DOID:7;4.55e-09;39 | |||
|ontology_enrichment_disease_v019_2=DOID:5093,2.40e-26,4;DOID:1612,2.40e-26,4;DOID:7,4.81e-10,39 | |||
|ontology_enrichment_uberon=UBERON:0007023!7.28e-22!115;UBERON:0001049!3.21e-15!57;UBERON:0005068!3.21e-15!57;UBERON:0006241!3.21e-15!57;UBERON:0007135!3.21e-15!57;UBERON:0003135!5.82e-13!11;UBERON:0000476!9.31e-13!3;UBERON:0000920!9.31e-13!3;UBERON:0000473!1.15e-12!8;UBERON:0001017!5.24e-12!82;UBERON:0005743!2.89e-11!86;UBERON:0002616!5.58e-11!59;UBERON:0003080!2.78e-10!42;UBERON:0003075!3.93e-10!86;UBERON:0007284!3.93e-10!86;UBERON:0000955!4.09e-10!69;UBERON:0006238!4.09e-10!69;UBERON:0000073!7.95e-10!94;UBERON:0001016!7.95e-10!94;UBERON:0002346!1.64e-09!90;UBERON:0002950!2.14e-09!2;UBERON:0001891!2.14e-09!2;UBERON:0009616!2.14e-09!2;UBERON:0003124!2.95e-09!7;UBERON:0002791!2.96e-09!33;UBERON:0001893!6.12e-09!34;UBERON:0002780!1.02e-08!41;UBERON:0001890!1.02e-08!41;UBERON:0006240!1.02e-08!41;UBERON:0003101!2.59e-08!22;UBERON:0000079!2.59e-08!22;UBERON:0002298!2.69e-08!8;UBERON:0003133!4.15e-08!48;UBERON:0001950!6.51e-08!20;UBERON:0005156!1.63e-07!59;UBERON:0000990!1.63e-07!59;UBERON:0002021!2.20e-07!5;UBERON:0002020!2.94e-07!34;UBERON:0003528!2.94e-07!34;UBERON:0000310!3.78e-07!10;UBERON:0002619!3.80e-07!22 | |||
|ontology_enrichment_uberon_v019=UBERON:0000310;2.15e-18;10!UBERON:0001443;9.49e-17;11!UBERON:0003135;5.08e-16;11!UBERON:0000473;8.78e-13;8!UBERON:0006834;1.32e-12;1!UBERON:0003101;2.31e-12;22!UBERON:0000079;2.31e-12;22!UBERON:0005795;3.08e-12;1!UBERON:0001301;3.08e-12;1!UBERON:0000991;1.35e-08;21!UBERON:0003133;1.41e-08;44!UBERON:0002423;2.75e-07;25 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000310,2.10e-18,10;UBERON:0001443,9.30e-17,11;UBERON:0003135,4.79e-16,11;UBERON:0000473,8.60e-13,8;UBERON:0006834,1.40e-12,1;UBERON:0003101,2.23e-12,22;UBERON:0000079,2.23e-12,22;UBERON:0001301,2.75e-12,1;UBERON:0005156,4.11e-11,59;UBERON:0000990,4.11e-11,59;UBERON:0003133,1.26e-10,48;UBERON:0000991,1.34e-08,21;UBERON:0009196,1.34e-08,21;UBERON:0009117,1.34e-08,21;UBERON:0005564,1.34e-08,21;UBERON:0004176,3.23e-08,22;UBERON:0009497,2.79e-07,25;UBERON:0000015,2.79e-07,25;UBERON:0002423,2.79e-07,25;UBERON:0006235,2.79e-07,25;UBERON:0004161,2.79e-07,25;UBERON:0009569,6.36e-07,112;UBERON:0003886,6.63e-07,54 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.383220493601921,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.03017567021455,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,143.026996030629,130.489896638421,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0927680981618513,0,100.785543539985,0,3.62499787717397,0,0,0,0,0,0,0,0,0,0.331737779793674,0,0,0,0,6.30992119731136,0,0,0.0897576444097721,0,0.31900115973192,0.824378340616761,0.533034776018635,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.067401132980677,0,0,0,0,0,0,0,0.30607276163049,0.252746318513952,0,0,0,0,0,0,0,0,0,0,0,2.97035336011451,0,0,0,0,0.0969890164884194,0,0,0,0,0.253243183823515,0,0,1.49417096317547,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.3330750268973,5.43944665315699,5.25747642062642,0,0,0,0,0,0,0,0,0,0,0,0.0788057072991982,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.327872630709804,0,0,0,0,0,0.665574309221114,0.18628920882415,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.192687675289379,0,0,0.205116364240755,0.252071696221718,0.138314504928436,0,0,0,0,0,0,0,0,0,12.7105454910245,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.227662191351298,0.177404740325278,0,0,0,0.0657727735628491,0,0,9.26218495636065,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.423387050190929,0.22910686854405,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.588925401344836,0.594092800654172,0,0,0,0,0,0,0,0,0,0,0.716697915757256,0,0.0679914901909147,0.436350690340377,0,0,0,0,0,0,0,0.305966489225945,0,1.65410819162721,0,3.25848402338429,1.60778478093707,0,0,0,0,0,0,0,0,0,0,0,0,0,0.332660356546013,0,0,0,0,0,6.23431365332619,2.44137706989443,0,0,0 | |||
|short_description=p4@GREB1 | |||
}} |
Latest revision as of 15:11, 16 September 2015
Short description: | p4@GREB1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_GREB1_5end |
Coexpression cluster: | C194_MCF7_breast_prostate_Intestinal_diffuse_Wilms_Alveolar |
Association with transcript: | 0bp_to_ENST00000389825, uc002rbm.2_5end |
EntrezGene: | GREB1 |
HGNC: | 24885 |
UniProt: | F8W6E5Q6IPM5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hepatocyte | 6.34e-09 | 12 |
Ontology term | p-value | n |
---|---|---|
breast | 2.10e-18 | 10 |
chest | 9.30e-17 | 11 |
male reproductive organ | 4.79e-16 | 11 |
testis | 8.60e-13 | 8 |
uterus or analog | 1.40e-12 | 1 |
male organism | 2.23e-12 | 22 |
male reproductive system | 2.23e-12 | 22 |
epididymis | 2.75e-12 | 1 |
reproductive structure | 4.11e-11 | 59 |
reproductive system | 4.11e-11 | 59 |
reproductive organ | 1.26e-10 | 48 |
gonad | 1.34e-08 | 21 |
indifferent external genitalia | 1.34e-08 | 21 |
indifferent gonad | 1.34e-08 | 21 |
gonad primordium | 1.34e-08 | 21 |
external genitalia | 3.23e-08 | 22 |
epithelium of foregut-midgut junction | 2.79e-07 | 25 |
anatomical boundary | 2.79e-07 | 25 |
hepatobiliary system | 2.79e-07 | 25 |
foregut-midgut junction | 2.79e-07 | 25 |
septum transversum | 2.79e-07 | 25 |
subdivision of trunk | 6.36e-07 | 112 |
body cavity precursor | 6.63e-07 | 54 |
Ontology term | p-value | n |
---|---|---|
thoracic cancer | 2.40e-26 | 4 |
breast cancer | 2.40e-26 | 4 |
disease of anatomical entity | 4.81e-10 | 39 |