FFCP PHASE1:Hg19::chr2:11679938..11679951,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=9687 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=24885 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=-17bp_to_ENST00000263834_5end | |||
|cluster_id=chr2:11679938..11679951,+ | |||
|coexpression_cluster_id=C1879 | |||
|description=CAGE_peak_1_at_GREB1_5end | |||
|id=chr2:11679938..11679951,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0000182;3.87e-11;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000182,4.02e-11,12 | |||
|ontology_enrichment_development_v019=UBERON:0005425;3.12e-09;1!UBERON:0009117;6.44e-08;10!UBERON:0005564;6.44e-08;10!UBERON:0004161;2.49e-07;11 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:5093;1.81e-19;4!DOID:1612;1.81e-19;4 | |||
|ontology_enrichment_disease_v019_2=DOID:5093,1.81e-19,4;DOID:1612,1.81e-19,4;DOID:7,3.34e-07,39 | |||
|ontology_enrichment_uberon=UBERON:0007023!2.03e-31!115;UBERON:0001049!6.04e-15!57;UBERON:0005068!6.04e-15!57;UBERON:0006241!6.04e-15!57;UBERON:0007135!6.04e-15!57;UBERON:0002346!1.40e-13!90;UBERON:0000073!1.64e-12!94;UBERON:0001016!1.64e-12!94;UBERON:0005743!2.15e-12!86;UBERON:0001017!3.20e-12!82;UBERON:0002616!1.19e-11!59;UBERON:0003075!1.74e-11!86;UBERON:0007284!1.74e-11!86;UBERON:0002298!1.91e-11!8;UBERON:0003080!1.71e-09!42;UBERON:0000955!6.51e-09!69;UBERON:0006238!6.51e-09!69;UBERON:0002780!1.91e-08!41;UBERON:0001890!1.91e-08!41;UBERON:0006240!1.91e-08!41;UBERON:0006947!1.83e-07!3;UBERON:0004054!1.83e-07!3;UBERON:0000924!1.93e-07!173;UBERON:0006601!1.93e-07!173;UBERON:0003076!3.77e-07!15;UBERON:0003057!3.77e-07!15;UBERON:0003135!6.98e-07!11;UBERON:0001893!8.35e-07!34 | |||
|ontology_enrichment_uberon_v019=UBERON:0001443;1.70e-18;11!UBERON:0000310;1.56e-13;10!UBERON:0003135;5.98e-12;11!UBERON:0006947;1.07e-11;3!UBERON:0004054;1.07e-11;3!UBERON:0001301;1.43e-09;1!UBERON:0005795;2.25e-09;1!UBERON:0006834;2.25e-09;1!UBERON:0001000;3.12e-09;1!UBERON:0000941;3.12e-09;1!UBERON:0001785;3.12e-09;1!UBERON:0002464;3.12e-09;1!UBERON:0004904;3.12e-09;1!UBERON:0001021;3.12e-09;1!UBERON:0005352;3.12e-09;1!UBERON:0002426;4.68e-09;1!UBERON:0003831;4.68e-09;1!UBERON:0003898;4.68e-09;1!UBERON:0004830;4.68e-09;1!UBERON:0003830;4.68e-09;1!UBERON:0005175;4.68e-09;1!UBERON:0001774;4.68e-09;1!UBERON:0001103;4.68e-09;1!UBERON:0003101;4.79e-09;22!UBERON:0000079;4.79e-09;22!UBERON:0005904;5.40e-09;4!UBERON:0002107;4.44e-07;19!UBERON:0006925;4.44e-07;19 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001443,1.61e-18,11;UBERON:0000310,1.56e-13,10;UBERON:0003135,6.06e-12,11;UBERON:0006947,1.10e-11,3;UBERON:0004054,1.10e-11,3;UBERON:0001301,1.43e-09,1;UBERON:0006834,2.35e-09,1;UBERON:0000941,3.00e-09,1;UBERON:0001785,3.00e-09,1;UBERON:0002464,3.00e-09,1;UBERON:0004904,3.00e-09,1;UBERON:0001021,3.00e-09,1;UBERON:0003902,3.00e-09,1;UBERON:0005425,3.00e-09,1;UBERON:0001000,3.25e-09,1;UBERON:0005352,3.25e-09,1;UBERON:0002426,4.15e-09,1;UBERON:0003831,4.15e-09,1;UBERON:0003898,4.15e-09,1;UBERON:0004830,4.15e-09,1;UBERON:0003830,4.15e-09,1;UBERON:0005175,4.15e-09,1;UBERON:0001774,4.15e-09,1;UBERON:0001103,4.15e-09,1;UBERON:0010084,4.15e-09,1;UBERON:0003101,4.83e-09,22;UBERON:0000079,4.83e-09,22;UBERON:0005904,5.51e-09,4;UBERON:0007023,5.09e-08,114;UBERON:0005156,1.07e-07,59;UBERON:0000990,1.07e-07,59;UBERON:0003133,1.83e-07,48;UBERON:0002107,4.55e-07,19;UBERON:0006925,4.55e-07,19;UBERON:0008836,4.55e-07,19 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136874425072884,0.125542639594803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113309342697566,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.33996642519167,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.286804595389004,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.53510069643662,0,0,0,0.122988438543114,0,0,0,0,0,0,0,0,0,0,0,0,0,26.8669495306154,16.3112370798026,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.285955987316295,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112085143993527,0,0,0,0,1.30139853857622,0.773288812777695,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.131124414959424,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.412164046590889,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.659006605437454,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213425530045242,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.4098700508785,0,0.293016358543788,0,0,0,0,0.296964680832639,0,0,0.140669416410513,0,0,0.211125408127993,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,26.3032038696086,0,6.52499617891314,0,0,0,0,0,0,0,0.120596438625408,0,0.331737779793674,0,0,0,0,2.92410982314429,0,0,0,0.108647371922008,0.957003479195758,1.00757352742049,0,0,0,0.166211681900156,0,0,0,0,0,0,0,0,0,0,0,0.611030144933625,0.593042257361244,0,0,0.067401132980677,1.60515529459758,0,0,0,0,2.76209081994573,0,0,0.189559738885464,0,0,0,0,0,0,0,0,0.173559738335131,0,0,9.78469342155369,0,0,0.0730893170861856,0,0.0969890164884194,0,0,0,0,0.0633107959558787,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.279282401272254,0,0.717873024576814,0.199679000498991,0,0,0.0671834724867263,0,0,18.3564814775831,14.83485450861,18.940395823026,0,0,0,0.136203406111576,0.321506296930038,0,0,0,0,0,0,0.236417121897595,0.157363764404994,0,0,0,0,0,0,0,0,0,0,0,0,0,0.439656701034247,0,0,0.39669780522807,0,0,0,0.314408610199332,0.414239055347196,0,0,0,0,0,0,0,0,0,0,0.122026264901963,0,1.14681839138014,0.110929051536852,0.310482014706917,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.163565394255844,0,0,0,0,0,0,0,0,0,0,0,0,0,0.218419276384028,0,0.212574920101683,0.123935764259002,0,0,0.157723490002507,0,0,0,0.706521476061055,0,0.319267718114302,0,0,0,0,2.85538840518309,0,0,0,0,0,0,0,23.9920947434131,0,0.781514011233092,0,0,0,0.135075169236789,0,0.206686796501184,0,0,0,0.992422356778588,0.175871244359621,0,0,0,1.82089681270989,0.91064876540519,0.354809480650555,0,0,0.203909198930495,0.131545547125698,0,0,8.47725402785551,0,0,0,0,0,0.643288897589907,0,0.116241425368125,0,0,0,0,0,0.430227358820278,0,0,0.423387050190929,0.22910686854405,0,0,0,0,0,0,0,0,0,0,0,0,0.11294608203896,0,0,0.154348316215889,0,0.470317296361523,0,0,0.196308467114945,0,0.4226557275834,0,0,0,0,0,0,0,0,0,0.143339583151451,0,0,0,0,0,0,0,0,0,0.253397002022874,0,0,0,0,5.22873017705852,5.89521086343593,0,0.20686599172379,0.426467963801962,0.23806443146374,0,0.0620747142958579,0,0.0636471582781649,0,0,0,0,0.430333232356058,0.332660356546013,0,0,0,0,0,4.27845054640033,4.47585796147312,0,0,0 | |||
|short_description=p1@GREB1 | |||
}} |
Latest revision as of 15:02, 16 September 2015
Short description: | p1@GREB1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_GREB1_5end |
Coexpression cluster: | C1879_ovary_MCF7_breast_hepatocellular_uterus_epididymis_testis |
Association with transcript: | -17bp_to_ENST00000263834_5end |
EntrezGene: | GREB1 |
HGNC: | 24885 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hepatocyte | 4.02e-11 | 12 |
Ontology term | p-value | n |
---|---|---|
chest | 1.61e-18 | 11 |
breast | 1.56e-13 | 10 |
male reproductive organ | 6.06e-12 | 11 |
male genital duct | 1.10e-11 | 3 |
internal male genitalia | 1.10e-11 | 3 |
epididymis | 1.43e-09 | 1 |
uterus or analog | 2.35e-09 | 1 |
cranial nerve II | 3.00e-09 | 1 |
cranial nerve | 3.00e-09 | 1 |
nerve trunk | 3.00e-09 | 1 |
nerve connecting eye with brain | 3.00e-09 | 1 |
nerve | 3.00e-09 | 1 |
retinal neural layer | 3.00e-09 | 1 |
presumptive neural retina | 3.00e-09 | 1 |
vas deferens | 3.25e-09 | 1 |
spermatic cord | 3.25e-09 | 1 |
chest muscle | 4.15e-09 | 1 |
respiratory system muscle | 4.15e-09 | 1 |
skeletal muscle of trunk | 4.15e-09 | 1 |
respiratory system skeletal muscle | 4.15e-09 | 1 |
thoracic segment muscle | 4.15e-09 | 1 |
chest organ | 4.15e-09 | 1 |
muscle of trunk | 4.15e-09 | 1 |
diaphragm | 4.15e-09 | 1 |
future diaphragm | 4.15e-09 | 1 |
male organism | 4.83e-09 | 22 |
male reproductive system | 4.83e-09 | 22 |
duct of male reproductive system | 5.51e-09 | 4 |
adult organism | 5.09e-08 | 114 |
reproductive structure | 1.07e-07 | 59 |
reproductive system | 1.07e-07 | 59 |
reproductive organ | 1.83e-07 | 48 |
liver | 4.55e-07 | 19 |
digestive gland | 4.55e-07 | 19 |
liver bud | 4.55e-07 | 19 |
Ontology term | p-value | n |
---|---|---|
thoracic cancer | 1.81e-19 | 4 |
breast cancer | 1.81e-19 | 4 |
disease of anatomical entity | 3.34e-07 | 39 |