FFCP PHASE1:Hg19::chr2:11679938..11679951,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=9687 | |EntrezGene=9687 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=24885 | |HGNC=24885 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-17bp_to_ENST00000263834_5end | |association_with_transcript=-17bp_to_ENST00000263834_5end | ||
|cluster_id=chr2:11679938..11679951,+ | |||
|coexpression_cluster_id=C1879 | |||
|description=CAGE_peak_1_at_GREB1_5end | |description=CAGE_peak_1_at_GREB1_5end | ||
|id=chr2:11679938..11679951,+ | |id=chr2:11679938..11679951,+ | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0000182;3.87e-11;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000182,4.02e-11,12 | |||
|ontology_enrichment_development_v019=UBERON:0005425;3.12e-09;1!UBERON:0009117;6.44e-08;10!UBERON:0005564;6.44e-08;10!UBERON:0004161;2.49e-07;11 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:5093;1.81e-19;4!DOID:1612;1.81e-19;4 | |||
|ontology_enrichment_disease_v019_2=DOID:5093,1.81e-19,4;DOID:1612,1.81e-19,4;DOID:7,3.34e-07,39 | |||
|ontology_enrichment_uberon=UBERON:0007023!2.03e-31!115;UBERON:0001049!6.04e-15!57;UBERON:0005068!6.04e-15!57;UBERON:0006241!6.04e-15!57;UBERON:0007135!6.04e-15!57;UBERON:0002346!1.40e-13!90;UBERON:0000073!1.64e-12!94;UBERON:0001016!1.64e-12!94;UBERON:0005743!2.15e-12!86;UBERON:0001017!3.20e-12!82;UBERON:0002616!1.19e-11!59;UBERON:0003075!1.74e-11!86;UBERON:0007284!1.74e-11!86;UBERON:0002298!1.91e-11!8;UBERON:0003080!1.71e-09!42;UBERON:0000955!6.51e-09!69;UBERON:0006238!6.51e-09!69;UBERON:0002780!1.91e-08!41;UBERON:0001890!1.91e-08!41;UBERON:0006240!1.91e-08!41;UBERON:0006947!1.83e-07!3;UBERON:0004054!1.83e-07!3;UBERON:0000924!1.93e-07!173;UBERON:0006601!1.93e-07!173;UBERON:0003076!3.77e-07!15;UBERON:0003057!3.77e-07!15;UBERON:0003135!6.98e-07!11;UBERON:0001893!8.35e-07!34 | |||
|ontology_enrichment_uberon_v019=UBERON:0001443;1.70e-18;11!UBERON:0000310;1.56e-13;10!UBERON:0003135;5.98e-12;11!UBERON:0006947;1.07e-11;3!UBERON:0004054;1.07e-11;3!UBERON:0001301;1.43e-09;1!UBERON:0005795;2.25e-09;1!UBERON:0006834;2.25e-09;1!UBERON:0001000;3.12e-09;1!UBERON:0000941;3.12e-09;1!UBERON:0001785;3.12e-09;1!UBERON:0002464;3.12e-09;1!UBERON:0004904;3.12e-09;1!UBERON:0001021;3.12e-09;1!UBERON:0005352;3.12e-09;1!UBERON:0002426;4.68e-09;1!UBERON:0003831;4.68e-09;1!UBERON:0003898;4.68e-09;1!UBERON:0004830;4.68e-09;1!UBERON:0003830;4.68e-09;1!UBERON:0005175;4.68e-09;1!UBERON:0001774;4.68e-09;1!UBERON:0001103;4.68e-09;1!UBERON:0003101;4.79e-09;22!UBERON:0000079;4.79e-09;22!UBERON:0005904;5.40e-09;4!UBERON:0002107;4.44e-07;19!UBERON:0006925;4.44e-07;19 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001443,1.61e-18,11;UBERON:0000310,1.56e-13,10;UBERON:0003135,6.06e-12,11;UBERON:0006947,1.10e-11,3;UBERON:0004054,1.10e-11,3;UBERON:0001301,1.43e-09,1;UBERON:0006834,2.35e-09,1;UBERON:0000941,3.00e-09,1;UBERON:0001785,3.00e-09,1;UBERON:0002464,3.00e-09,1;UBERON:0004904,3.00e-09,1;UBERON:0001021,3.00e-09,1;UBERON:0003902,3.00e-09,1;UBERON:0005425,3.00e-09,1;UBERON:0001000,3.25e-09,1;UBERON:0005352,3.25e-09,1;UBERON:0002426,4.15e-09,1;UBERON:0003831,4.15e-09,1;UBERON:0003898,4.15e-09,1;UBERON:0004830,4.15e-09,1;UBERON:0003830,4.15e-09,1;UBERON:0005175,4.15e-09,1;UBERON:0001774,4.15e-09,1;UBERON:0001103,4.15e-09,1;UBERON:0010084,4.15e-09,1;UBERON:0003101,4.83e-09,22;UBERON:0000079,4.83e-09,22;UBERON:0005904,5.51e-09,4;UBERON:0007023,5.09e-08,114;UBERON:0005156,1.07e-07,59;UBERON:0000990,1.07e-07,59;UBERON:0003133,1.83e-07,48;UBERON:0002107,4.55e-07,19;UBERON:0006925,4.55e-07,19;UBERON:0008836,4.55e-07,19 | |||
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| ||
|short_description=p1@GREB1 | |short_description=p1@GREB1 | ||
}} | }} |
Latest revision as of 15:02, 16 September 2015
Short description: | p1@GREB1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_GREB1_5end |
Coexpression cluster: | C1879_ovary_MCF7_breast_hepatocellular_uterus_epididymis_testis |
Association with transcript: | -17bp_to_ENST00000263834_5end |
EntrezGene: | GREB1 |
HGNC: | 24885 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hepatocyte | 4.02e-11 | 12 |
Ontology term | p-value | n |
---|---|---|
chest | 1.61e-18 | 11 |
breast | 1.56e-13 | 10 |
male reproductive organ | 6.06e-12 | 11 |
male genital duct | 1.10e-11 | 3 |
internal male genitalia | 1.10e-11 | 3 |
epididymis | 1.43e-09 | 1 |
uterus or analog | 2.35e-09 | 1 |
cranial nerve II | 3.00e-09 | 1 |
cranial nerve | 3.00e-09 | 1 |
nerve trunk | 3.00e-09 | 1 |
nerve connecting eye with brain | 3.00e-09 | 1 |
nerve | 3.00e-09 | 1 |
retinal neural layer | 3.00e-09 | 1 |
presumptive neural retina | 3.00e-09 | 1 |
vas deferens | 3.25e-09 | 1 |
spermatic cord | 3.25e-09 | 1 |
chest muscle | 4.15e-09 | 1 |
respiratory system muscle | 4.15e-09 | 1 |
skeletal muscle of trunk | 4.15e-09 | 1 |
respiratory system skeletal muscle | 4.15e-09 | 1 |
thoracic segment muscle | 4.15e-09 | 1 |
chest organ | 4.15e-09 | 1 |
muscle of trunk | 4.15e-09 | 1 |
diaphragm | 4.15e-09 | 1 |
future diaphragm | 4.15e-09 | 1 |
male organism | 4.83e-09 | 22 |
male reproductive system | 4.83e-09 | 22 |
duct of male reproductive system | 5.51e-09 | 4 |
adult organism | 5.09e-08 | 114 |
reproductive structure | 1.07e-07 | 59 |
reproductive system | 1.07e-07 | 59 |
reproductive organ | 1.83e-07 | 48 |
liver | 4.55e-07 | 19 |
digestive gland | 4.55e-07 | 19 |
liver bud | 4.55e-07 | 19 |
Ontology term | p-value | n |
---|---|---|
thoracic cancer | 1.81e-19 | 4 |
breast cancer | 1.81e-19 | 4 |
disease of anatomical entity | 3.34e-07 | 39 |