FFCP PHASE1:Hg19::chr2:26257234..26257336,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=10890 | |EntrezGene=10890 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9759 | |HGNC=9759 | ||
|TSSclassifier=strong | |||
|UniProt=P61026 | |UniProt=P61026 | ||
|association_with_transcript=255bp_to_ENST00000264710_5end | |association_with_transcript=255bp_to_ENST00000264710_5end | ||
|cluster_id=chr2:26257234..26257336,+ | |||
|coexpression_cluster_id=C26 | |||
|description=CAGE_peak_3_at_RAB10_5end | |description=CAGE_peak_3_at_RAB10_5end | ||
|id=chr2:26257234..26257336,+ | |id=chr2:26257234..26257336,+ | ||
|ontology_enrichment_celltype=CL:0000766!8.46e-33!76;CL:0000557!1.26e-29!71;CL:0000839!5.20e-29!70;CL:0002009!1.84e-28!65;CL:0002194!2.98e-27!63;CL:0000576!2.98e-27!63;CL:0000040!2.98e-27!63;CL:0000559!2.98e-27!63;CL:0002057!3.07e-27!42;CL:0000860!9.57e-26!45;CL:0000763!1.78e-20!112;CL:0000049!1.78e-20!112;CL:0000738!4.68e-11!140;CL:0002031!2.31e-08!124;CL:0002087!6.92e-07!119 | |ontology_enrichment_celltype=CL:0000766!8.46e-33!76;CL:0000557!1.26e-29!71;CL:0000839!5.20e-29!70;CL:0002009!1.84e-28!65;CL:0002194!2.98e-27!63;CL:0000576!2.98e-27!63;CL:0000040!2.98e-27!63;CL:0000559!2.98e-27!63;CL:0002057!3.07e-27!42;CL:0000860!9.57e-26!45;CL:0000763!1.78e-20!112;CL:0000049!1.78e-20!112;CL:0000738!4.68e-11!140;CL:0002031!2.31e-08!124;CL:0002087!6.92e-07!119 | ||
|ontology_enrichment_celltype_v019=CL:0000860;8.11e-21;33!CL:0002057;8.11e-21;33!CL:0000473;2.31e-20;39!CL:0000234;2.31e-20;39!CL:0000576;7.04e-17;48!CL:0000766;1.70e-15;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000766,7.67e-34,72;CL:0000473,3.80e-31,48;CL:0000234,3.80e-31,48;CL:0000557,1.37e-30,67;CL:0000839,5.85e-30,66;CL:0002009,1.80e-29,61;CL:0002194,3.12e-28,59;CL:0000576,3.12e-28,59;CL:0000040,3.12e-28,59;CL:0000559,3.12e-28,59;CL:0000860,1.13e-27,42;CL:0002057,1.13e-27,42;CL:0000763,3.96e-20,108;CL:0000049,3.96e-20,108;CL:0000738,8.71e-12,136;CL:0002031,6.89e-09,120;CL:0002087,2.71e-07,115;CL:0002393,9.66e-07,9;CL:0002397,9.66e-07,9 | |||
|ontology_enrichment_development_v019=CL:0002057;1.74e-20;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!1.75e-32!102;UBERON:0003061!1.75e-32!102;UBERON:0002193!2.20e-32!112;UBERON:0002371!3.66e-29!80;UBERON:0001474!1.15e-24!86;UBERON:0004765!9.79e-23!101;UBERON:0001434!9.79e-23!101;UBERON:0003081!1.75e-21!216;UBERON:0002405!1.18e-20!115;UBERON:0002204!6.94e-18!167;UBERON:0000926!2.89e-14!448;UBERON:0004120!2.89e-14!448;UBERON:0006603!2.89e-14!448;UBERON:0000480!4.89e-10!626;UBERON:0000467!5.60e-10!625;UBERON:0002050!6.38e-10!605;UBERON:0005423!6.38e-10!605;UBERON:0000923!1.25e-09!604;UBERON:0005291!1.25e-09!604;UBERON:0006598!1.25e-09!604;UBERON:0002532!1.25e-09!604;UBERON:0000468!4.59e-09!659;UBERON:0000922!8.29e-09!612 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,2.35e-33,98;UBERON:0003061,2.35e-33,98;UBERON:0002193,2.71e-33,108;UBERON:0002371,4.15e-30,76;UBERON:0002405,2.03e-29,93;UBERON:0004765,2.52e-26,90;UBERON:0001474,2.89e-25,82;UBERON:0003081,6.36e-24,203;UBERON:0001434,1.05e-22,100;UBERON:0002204,1.06e-17,167;UBERON:0000926,2.06e-17,315;UBERON:0004120,2.06e-17,315;UBERON:0006603,2.06e-17,315;UBERON:0002050,2.75e-12,564;UBERON:0000923,3.80e-11,560;UBERON:0010316,3.80e-11,560;UBERON:0005291,3.80e-11,560;UBERON:0006598,3.80e-11,560;UBERON:0010317,3.80e-11,560;UBERON:0002532,3.80e-11,560;UBERON:0005423,4.45e-10,581;UBERON:0000922,8.14e-09,592 | |||
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| ||
|short_description=p3@RAB10 | |short_description=p3@RAB10 | ||
}} | }} |
Latest revision as of 14:36, 16 September 2015
Short description: | p3@RAB10 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_RAB10_5end |
Coexpression cluster: | C26_Eosinophils_Neutrophils_CD14_CD14CD16_Basophils_Monocytederived_Whole |
Association with transcript: | 255bp_to_ENST00000264710_5end |
EntrezGene: | RAB10 |
HGNC: | 9759 |
UniProt: | P61026 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid leukocyte | 7.67e-34 | 72 |
defensive cell | 3.80e-31 | 48 |
phagocyte | 3.80e-31 | 48 |
granulocyte monocyte progenitor cell | 1.37e-30 | 67 |
myeloid lineage restricted progenitor cell | 5.85e-30 | 66 |
macrophage dendritic cell progenitor | 1.80e-29 | 61 |
monopoietic cell | 3.12e-28 | 59 |
monocyte | 3.12e-28 | 59 |
monoblast | 3.12e-28 | 59 |
promonocyte | 3.12e-28 | 59 |
classical monocyte | 1.13e-27 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.13e-27 | 42 |
myeloid cell | 3.96e-20 | 108 |
common myeloid progenitor | 3.96e-20 | 108 |
leukocyte | 8.71e-12 | 136 |
hematopoietic lineage restricted progenitor cell | 6.89e-09 | 120 |
nongranular leukocyte | 2.71e-07 | 115 |
intermediate monocyte | 9.66e-07 | 9 |
CD14-positive, CD16-positive monocyte | 9.66e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 2.35e-33 | 98 |
blood island | 2.35e-33 | 98 |
hemolymphoid system | 2.71e-33 | 108 |
bone marrow | 4.15e-30 | 76 |
immune system | 2.03e-29 | 93 |
skeletal element | 2.52e-26 | 90 |
bone element | 2.89e-25 | 82 |
lateral plate mesoderm | 6.36e-24 | 203 |
skeletal system | 1.05e-22 | 100 |
musculoskeletal system | 1.06e-17 | 167 |
mesoderm | 2.06e-17 | 315 |
mesoderm-derived structure | 2.06e-17 | 315 |
presumptive mesoderm | 2.06e-17 | 315 |
embryonic structure | 2.75e-12 | 564 |
germ layer | 3.80e-11 | 560 |
germ layer / neural crest | 3.80e-11 | 560 |
embryonic tissue | 3.80e-11 | 560 |
presumptive structure | 3.80e-11 | 560 |
germ layer / neural crest derived structure | 3.80e-11 | 560 |
epiblast (generic) | 3.80e-11 | 560 |
developing anatomical structure | 4.45e-10 | 581 |
embryo | 8.14e-09 | 592 |