FFCP PHASE1:Hg19::chr1:12677996..12678016,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr1:12677996..12678016,- to FFCP PHASE1:Hg19::chr1:12677996..12678016,-: NSchange) |
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(9 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=9249 | |EntrezGene=9249 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=17693 | |HGNC=17693 | ||
|TSSclassifier=strong | |||
|UniProt=O75911 | |UniProt=O75911 | ||
|association_with_transcript=-176bp_to_NM_004753,uc001auc.2,uc001aud.3,uc009vnm.2_5end | |||
|cluster_id=chr1:12677996..12678016,- | |||
|description=CAGE_peak_7_at_DHRS3_5end | |||
|id=chr1:12677996..12678016,- | |||
|ontology_enrichment_celltype=CL:0000222!1.51e-12!119;CL:0000183!2.77e-10!59;CL:0000187!8.21e-10!54;CL:0000192!2.63e-09!42;CL:0000514!2.63e-09!42;CL:0000359!1.13e-08!32;CL:0000680!2.17e-08!57;CL:0000056!2.17e-08!57;CL:0000355!2.17e-08!57;CL:0000393!2.90e-08!60;CL:0000211!2.90e-08!60;CL:0002321!3.77e-07!248;CL:0000055!4.98e-07!180;CL:0000220!7.05e-07!246 | |||
|ontology_enrichment_celltype_v019=CL:0000359;3.16e-08;32!CL:0000192;2.48e-07;43 | |||
|ontology_enrichment_celltype_v019_2=CL:0000222,7.02e-13,121;CL:0000187,4.05e-10,55;CL:0000192,3.12e-09,43;CL:0000514,3.12e-09,43;CL:0000393,6.71e-09,61;CL:0000211,6.71e-09,61;CL:0000359,1.30e-08,32;CL:0000680,1.33e-08,58;CL:0000056,1.33e-08,58;CL:0000355,1.33e-08,58;CL:0002321,1.37e-07,250 | |||
|ontology_enrichment_development_v019=CL:0000514;2.48e-07;43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003914!2.98e-17!118;UBERON:0004111!3.84e-17!241;UBERON:0000025!3.07e-16!194;UBERON:0000477!2.33e-15!286;UBERON:0000119!2.64e-15!312;UBERON:0000483!3.89e-15!309;UBERON:0000490!8.83e-15!138;UBERON:0000481!9.13e-15!347;UBERON:0000475!1.99e-13!365;UBERON:0005256!1.47e-12!143;UBERON:0002100!4.81e-12!216;UBERON:0003104!2.84e-10!238;UBERON:0009142!2.84e-10!238;UBERON:0001637!3.03e-09!42;UBERON:0003509!3.03e-09!42;UBERON:0004572!3.03e-09!42;UBERON:0002385!3.09e-09!63;UBERON:0001015!3.09e-09!63;UBERON:0000383!3.09e-09!63;UBERON:0000468!4.17e-09!659;UBERON:0001134!4.46e-09!61;UBERON:0002036!4.46e-09!61;UBERON:0003082!4.46e-09!61;UBERON:0001981!4.79e-09!60;UBERON:0007500!4.79e-09!60;UBERON:0004537!4.79e-09!60;UBERON:0006965!4.79e-09!60;UBERON:0002417!1.07e-08!61;UBERON:0000916!1.07e-08!61;UBERON:0004573!2.11e-08!33;UBERON:0004571!2.11e-08!33;UBERON:0002049!3.05e-08!79;UBERON:0007798!3.05e-08!79;UBERON:0000055!4.57e-08!69;UBERON:0003064!5.11e-08!37;UBERON:0000466!7.71e-08!126;UBERON:0009569!9.13e-08!113;UBERON:0005177!1.56e-07!107;UBERON:0005172!2.98e-07!55;UBERON:0005173!2.98e-07!55;UBERON:0004872!4.39e-07!84 | |||
|ontology_enrichment_uberon_v019=UBERON:0004573;1.07e-07;33!UBERON:0004571;1.07e-07;33 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003914,4.61e-17,117;UBERON:0003104,1.45e-15,160;UBERON:0009142,1.45e-15,160;UBERON:0005256,5.23e-15,122;UBERON:0004111,6.47e-15,240;UBERON:0002100,4.98e-14,199;UBERON:0000025,5.64e-14,192;UBERON:0000119,1.12e-13,309;UBERON:0000483,1.57e-13,306;UBERON:0000490,3.64e-11,148;UBERON:0002385,1.69e-09,64;UBERON:0001015,1.69e-09,64;UBERON:0000383,1.69e-09,64;UBERON:0001637,2.34e-09,42;UBERON:0003509,2.34e-09,42;UBERON:0004572,2.34e-09,42;UBERON:0001134,2.51e-09,62;UBERON:0002036,2.51e-09,62;UBERON:0003082,2.51e-09,62;UBERON:0002417,8.03e-09,60;UBERON:0000916,8.03e-09,60;UBERON:0004573,1.02e-08,33;UBERON:0004571,1.02e-08,33;UBERON:0007500,1.34e-08,59;UBERON:0001981,1.34e-08,59;UBERON:0004537,1.34e-08,59;UBERON:0006965,1.34e-08,59;UBERON:0007503,4.74e-08,78;UBERON:0009569,8.41e-08,112;UBERON:0000055,1.66e-07,68;UBERON:0005177,2.66e-07,101;UBERON:0005172,2.69e-07,54;UBERON:0005173,2.69e-07,54;UBERON:0002049,3.97e-07,78;UBERON:0007798,3.97e-07,78;UBERON:0003064,6.79e-07,28 | |||
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|short_description=p7@DHRS3 | |||
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Latest revision as of 14:31, 16 September 2015
Short description: | p7@DHRS3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_7_at_DHRS3_5end |
Coexpression cluster: | NA |
Association with transcript: | -176bp_to_NM_004753, uc001auc.2, uc001aud.3, uc009vnm.2_5end |
EntrezGene: | DHRS3 |
HGNC: | 17693 |
UniProt: | O75911 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesodermal cell | 7.02e-13 | 121 |
muscle cell | 4.05e-10 | 55 |
smooth muscle cell | 3.12e-09 | 43 |
smooth muscle myoblast | 3.12e-09 | 43 |
electrically responsive cell | 6.71e-09 | 61 |
electrically active cell | 6.71e-09 | 61 |
vascular associated smooth muscle cell | 1.30e-08 | 32 |
muscle precursor cell | 1.33e-08 | 58 |
myoblast | 1.33e-08 | 58 |
multi-potent skeletal muscle stem cell | 1.33e-08 | 58 |
embryonic cell | 1.37e-07 | 250 |
Ontology term | p-value | n |
---|---|---|
epithelial tube | 4.61e-17 | 117 |
mesenchyme | 1.45e-15 | 160 |
entire embryonic mesenchyme | 1.45e-15 | 160 |
trunk mesenchyme | 5.23e-15 | 122 |
anatomical conduit | 6.47e-15 | 240 |
trunk | 4.98e-14 | 199 |
tube | 5.64e-14 | 192 |
cell layer | 1.12e-13 | 309 |
epithelium | 1.57e-13 | 306 |
unilaminar epithelium | 3.64e-11 | 148 |
muscle tissue | 1.69e-09 | 64 |
musculature | 1.69e-09 | 64 |
musculature of body | 1.69e-09 | 64 |
artery | 2.34e-09 | 42 |
arterial blood vessel | 2.34e-09 | 42 |
arterial system | 2.34e-09 | 42 |
skeletal muscle tissue | 2.51e-09 | 62 |
striated muscle tissue | 2.51e-09 | 62 |
myotome | 2.51e-09 | 62 |
abdominal segment of trunk | 8.03e-09 | 60 |
abdomen | 8.03e-09 | 60 |
systemic artery | 1.02e-08 | 33 |
systemic arterial system | 1.02e-08 | 33 |
epithelial tube open at both ends | 1.34e-08 | 59 |
blood vessel | 1.34e-08 | 59 |
blood vasculature | 1.34e-08 | 59 |
vascular cord | 1.34e-08 | 59 |
epithelial vesicle | 4.74e-08 | 78 |
subdivision of trunk | 8.41e-08 | 112 |
vessel | 1.66e-07 | 68 |
trunk region element | 2.66e-07 | 101 |
abdomen element | 2.69e-07 | 54 |
abdominal segment element | 2.69e-07 | 54 |
vasculature | 3.97e-07 | 78 |
vascular system | 3.97e-07 | 78 |
intermediate mesoderm | 6.79e-07 | 28 |