FFCP PHASE1:Hg19::chr1:12677860..12677865,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr1:12677860..12677865,-
|short_description=p10@DHRS3
|description=CAGE_peak_10_at_DHRS3_5end
|association_with_transcript=-40bp_to_NM_004753,uc001auc.2,uc001a...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=9249 | |EntrezGene=9249 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=17693 | |HGNC=17693 | ||
|TSSclassifier=strong | |||
|UniProt=O75911 | |UniProt=O75911 | ||
|association_with_transcript=-40bp_to_NM_004753,uc001auc.2,uc001aud.3,uc009vnm.2_5end | |||
|cluster_id=chr1:12677860..12677865,- | |||
|description=CAGE_peak_10_at_DHRS3_5end | |||
|id=chr1:12677860..12677865,- | |||
|ontology_enrichment_celltype=CL:0000183!4.26e-11!59;CL:0000187!1.14e-10!54;CL:0000222!1.71e-10!119;CL:0000192!4.26e-10!42;CL:0000514!4.26e-10!42;CL:0000359!5.30e-10!32;CL:0000680!1.90e-09!57;CL:0000056!1.90e-09!57;CL:0000355!1.90e-09!57;CL:0000393!3.38e-08!60;CL:0000211!3.38e-08!60 | |||
|ontology_enrichment_celltype_v019=CL:0000359;7.02e-10;32!CL:0000192;2.86e-07;43 | |||
|ontology_enrichment_celltype_v019_2=CL:0000359,3.23e-10,32;CL:0000192,7.58e-10,43;CL:0000514,7.58e-10,43;CL:0000187,9.10e-09,55;CL:0000680,6.66e-08,58;CL:0000056,6.66e-08,58;CL:0000355,6.66e-08,58;CL:0000393,3.89e-07,61;CL:0000211,3.89e-07,61 | |||
|ontology_enrichment_development_v019=CL:0000514;2.86e-07;43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004111!1.54e-15!241;UBERON:0000477!3.40e-15!286;UBERON:0000483!6.58e-15!309;UBERON:0000119!8.65e-15!312;UBERON:0000025!5.35e-14!194;UBERON:0003914!7.41e-14!118;UBERON:0000481!3.78e-13!347;UBERON:0000475!4.32e-13!365;UBERON:0000490!4.97e-12!138;UBERON:0002385!1.41e-10!63;UBERON:0001015!1.41e-10!63;UBERON:0000383!1.41e-10!63;UBERON:0001637!3.08e-10!42;UBERON:0003509!3.08e-10!42;UBERON:0004572!3.08e-10!42;UBERON:0001981!4.45e-10!60;UBERON:0007500!4.45e-10!60;UBERON:0004537!4.45e-10!60;UBERON:0006965!4.45e-10!60;UBERON:0001134!4.96e-10!61;UBERON:0002036!4.96e-10!61;UBERON:0003082!4.96e-10!61;UBERON:0004872!6.66e-10!84;UBERON:0002049!1.42e-09!79;UBERON:0007798!1.42e-09!79;UBERON:0005256!1.80e-09!143;UBERON:0000468!3.50e-09!659;UBERON:0004573!5.58e-09!33;UBERON:0004571!5.58e-09!33;UBERON:0000055!9.53e-09!69;UBERON:0002100!1.77e-08!216;UBERON:0001009!3.49e-08!113;UBERON:0004290!6.09e-08!70;UBERON:0004535!1.21e-07!110;UBERON:0000486!1.59e-07!82;UBERON:0000467!1.90e-07!625;UBERON:0000480!2.74e-07!626 | |||
|ontology_enrichment_uberon_v019=UBERON:0004573;3.03e-08;33!UBERON:0004571;3.03e-08;33 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005256,8.68e-10,122;UBERON:0001637,2.98e-09,42;UBERON:0003509,2.98e-09,42;UBERON:0004572,2.98e-09,42;UBERON:0004573,6.34e-09,33;UBERON:0004571,6.34e-09,33;UBERON:0002385,9.78e-09,64;UBERON:0001015,9.78e-09,64;UBERON:0000383,9.78e-09,64;UBERON:0001134,1.76e-08,62;UBERON:0002036,1.76e-08,62;UBERON:0003082,1.76e-08,62;UBERON:0007503,2.16e-08,78;UBERON:0003104,2.39e-08,160;UBERON:0009142,2.39e-08,160;UBERON:0002100,4.69e-08,199;UBERON:0000119,4.91e-08,309;UBERON:0003914,5.28e-08,117;UBERON:0000483,7.59e-08,306;UBERON:0002329,1.25e-07,71;UBERON:0003059,1.25e-07,71;UBERON:0007282,1.25e-07,71;UBERON:0004290,1.25e-07,71;UBERON:0009618,1.25e-07,71;UBERON:0000486,1.34e-07,83;UBERON:0003077,2.09e-07,72;UBERON:0007285,2.09e-07,72;UBERON:0007524,3.46e-07,73;UBERON:0004111,5.37e-07,240 | |||
|phase1_expression=0.181678379270557,1.2846031433459,0.422863212287913,2.00146596706261,5.81049422755474,2.61701557230111,0,1.26343974685366,2.87304191019822,0.491467873003018,4.18680700783456,0,0,0,1.32558950291166,3.36162573225888,0.602694528023977,1.46062018077475,1.46379839637152,6.52541607806976,8.56802903225863,4.07491137921514,1.71741592278634,1.23186982565596,0.753255837568817,0.0764134057479513,0,0.550975469195755,0,0,0,0,0,0,0,0,0,0,0.200544447470142,0,0.447830948479849,1.29557466407592,1.28787783817093,0,0,0,0,0,0,0,0.256160706529101,0,0,0,0,0.188242339542605,0,0.224723484445085,0,0,0,0,0.199463657621632,0,0.290209238628584,0,0,0.251248665256743,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.263384084775077,0,0,0,0,0,0,1.94826728407911,0,0,0,0,0,0,0.164437904603676,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144824403882799,0,15.4261197731836,11.2519054422307,2.53007406669196,1.00267582127178,1.30361867064741,0,0.973269740605272,0.850813354476611,1.99556457716308,3.60122621341817,0.327447688744282,0,0,0,0,0.398873881556595,0,0,0,0.198762407366705,0,0.347140501607594,0.56530794192401,0.838998872419812,0,0.626984899610432,0.516833518338658,0.71153252537342,0.66944122552934,2.81980521976403,0.760272105718513,0.24406205754817,0.367663080345869,0.81014194788176,0.0892997282840798,0.898117490504679,0.112611480483322,0,0.949265659568129,0.549605231791222,0,0,0,0.496971951695318,0,0.529636723252875,3.44203944898576,1.77334191099179,0.560677600142307,2.1349799145941,0.74000264525148,0,0.67355336034844,0.817309515567294,0.151357427644931,0,0,0,0,0,0,0.161872944368132,0,0,0,0.103325781175765,0,0.247266929278557,0,0,0,0,0,0,0.612975591598039,0.751190294532984,0.340296549480063,0.538168907066586,0.213557388818567,0,0.600182192168805,0.618315175430633,1.8034837803194,0.744467425326359,1.0126579934476,0.876933046450788,1.7670364197088,0.276149695926898,1.93975268182574,1.06502877754984,0.302256294682921,0,0,0.272746120590835,0.286804595389004,0.243947412259191,0.265059536642971,0.348581828608555,0,0.756962552626885,0,1.56449532329816,1.92972281457866,0,0.928735856063958,0.721879481669586,0,0.168584690078102,0,0,0,0,0.134831308160164,0,0.38474715694639,2.21446636387394,0,0,0,1.26755034821831,1.96565443335525,2.36315962672562,0,0.122988438543114,8.7499583252248,0,0,0,0,0.325808305310325,0,5.77325368101093,3.36198174427723,4.81375646366869,0.721832238805369,0.462985512576611,0,0,0,0.246217006087397,0.234004265139238,0.148631162288728,0,0,0,0,0,0.383382679165211,0,0.44024217006613,0,0,0,0,0,0,0,0.102827492703324,0,0.285826432630578,0,13.0788020649984,0,0.258543431515556,7.15312891703765,0,0.531876233169741,4.16029747645464,0,0,0.266422179016099,0,1.08524321078289,0,0,0.355391948742546,1.58390374586686,1.20575750823834,1.74306691720059,2.7992437530976,0,1.00451418286425,2.10833939483032,0,1.14861935834114,0,0,0,0.179060963239896,0.112085143993527,0,0.215627574859517,0,0,0,0,0,0,0,0,0,1.10422342547226,0.500170521059677,0,3.32753378449291,0.535286966391485,1.57702415033935,0.819989904948992,0.601892199455438,2.27407504055985,1.03473071292505,0,0,0,0.195801157462741,0,0,0.862856803274467,0,0,0,0.30239029332968,0,0.767309866440312,0.280660094433074,0.384417447767103,1.53512174720011,0.321707842287215,0,0.154209693802656,1.06537035187876,0.164254312027618,0,0.581051892299796,0,0.200506470303285,0.184161977871793,0.68888668898764,1.45672934405374,5.24497659837697,0,0.15403067420883,0.784349769176855,2.92278449306521,0.105551628892876,0,0.680374821106063,0.863663664408557,0,3.52230368807009,5.01689773854853,0.254876273045038,0,1.11937377361089,0.219259876645935,0,1.53870075069834,5.576248976895,0.325378394664303,0.618246069886334,0.366277859273374,0.165018999841176,0,0,0,0.676695028044854,0.462145851343933,0.767518373630648,0.551346289938122,0.322260734604821,1.88521702088497,0.255679882248303,0.623224249527161,0.165284915360978,0,0,0,0.929691098594572,4.09256050879832,0.6970372701606,0.924100740528266,0,3.47973196830029,2.03856641014312,3.00562262158182,0,0.949138274156178,0.38126038784765,0,0.42793898803392,2.22742273548156,4.70969184119538,0,0.274537029736055,0.706874414074119,1.01091240786658,1.58510321173008,1.68503382495592,0.975267478179181,2.68084838594413,2.11300293513511,3.8219975194236,4.10075752665767,10.1707304958219,6.06501877900737,1.32687795048244,3.94605796728386,0,1.9676842561399,1.01455188481352,0.6196469961995,5.91560765317707,0.143411352204052,0.491245205065606,1.07001315444375,1.77380532035299,2.32218398827431,4.28083360847872,0,0.699869440489966,0,0,1.08890984861323,0.564862804660675,0,0,0,0,0,0,0,0,0,0,0,0,0.106824071127473,0,2.94048259177238,0,0,0,0,0,0,0,0.324621940274555,0,0,0,0,0,0,0,0,0,0.307240764308458,0,0,0,0,0,0.270455678475983,0,7.04935025439248,0,1.90460633053462,0,0,0.568272293612826,0.47748896947538,0,0,0.994147647766298,1.68803299692615,1.11308705022906,0,0,4.98119970627674,0,0,0.409074730008619,0,0,0.179736702294654,0.537063524026827,0,1.57829449019094,2.3948309234694,0,2.9079982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| ||
|short_description=p10@DHRS3 | |||
}} | }} |
Latest revision as of 14:29, 16 September 2015
Short description: | p10@DHRS3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_10_at_DHRS3_5end |
Coexpression cluster: | NA |
Association with transcript: | -40bp_to_NM_004753, uc001auc.2, uc001aud.3, uc009vnm.2_5end |
EntrezGene: | DHRS3 |
HGNC: | 17693 |
UniProt: | O75911 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
vascular associated smooth muscle cell | 3.23e-10 | 32 |
smooth muscle cell | 7.58e-10 | 43 |
smooth muscle myoblast | 7.58e-10 | 43 |
muscle cell | 9.10e-09 | 55 |
muscle precursor cell | 6.66e-08 | 58 |
myoblast | 6.66e-08 | 58 |
multi-potent skeletal muscle stem cell | 6.66e-08 | 58 |
electrically responsive cell | 3.89e-07 | 61 |
electrically active cell | 3.89e-07 | 61 |
Ontology term | p-value | n |
---|---|---|
trunk mesenchyme | 8.68e-10 | 122 |
artery | 2.98e-09 | 42 |
arterial blood vessel | 2.98e-09 | 42 |
arterial system | 2.98e-09 | 42 |
systemic artery | 6.34e-09 | 33 |
systemic arterial system | 6.34e-09 | 33 |
muscle tissue | 9.78e-09 | 64 |
musculature | 9.78e-09 | 64 |
musculature of body | 9.78e-09 | 64 |
skeletal muscle tissue | 1.76e-08 | 62 |
striated muscle tissue | 1.76e-08 | 62 |
myotome | 1.76e-08 | 62 |
epithelial vesicle | 2.16e-08 | 78 |
mesenchyme | 2.39e-08 | 160 |
entire embryonic mesenchyme | 2.39e-08 | 160 |
trunk | 4.69e-08 | 199 |
cell layer | 4.91e-08 | 309 |
epithelial tube | 5.28e-08 | 117 |
epithelium | 7.59e-08 | 306 |
somite | 1.25e-07 | 71 |
presomitic mesoderm | 1.25e-07 | 71 |
presumptive segmental plate | 1.25e-07 | 71 |
dermomyotome | 1.25e-07 | 71 |
trunk paraxial mesoderm | 1.25e-07 | 71 |
multilaminar epithelium | 1.34e-07 | 83 |
paraxial mesoderm | 2.09e-07 | 72 |
presumptive paraxial mesoderm | 2.09e-07 | 72 |
dense mesenchyme tissue | 3.46e-07 | 73 |
anatomical conduit | 5.37e-07 | 240 |