FFCP PHASE1:Hg19::chr19:18284561..18284667,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr19:18284561..18284667,+ to FFCP PHASE1:Hg19::chr19:18284561..18284667,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=10437 | |EntrezGene=10437 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=5398 | |HGNC=5398 | ||
|TSSclassifier=strong | |||
|UniProt=P13284 | |UniProt=P13284 | ||
|association_with_transcript=0bp_to_ENST00000407280,NM_006332,uc002nic.1_5end | |||
|cluster_id=chr19:18284561..18284667,+ | |||
|coexpression_cluster_id=C392 | |||
|description=CAGE_peak_1_at_IFI30_5end | |||
|id=chr19:18284561..18284667,+ | |||
|ontology_enrichment_celltype=CL:0000738!4.89e-38!140;CL:0000766!4.50e-36!76;CL:0000037!8.89e-33!172;CL:0000566!8.89e-33!172;CL:0002009!9.67e-33!65;CL:0000557!7.57e-32!71;CL:0002194!9.69e-32!63;CL:0000576!9.69e-32!63;CL:0000040!9.69e-32!63;CL:0000559!9.69e-32!63;CL:0002032!2.46e-31!165;CL:0000837!2.46e-31!165;CL:0002087!1.73e-30!119;CL:0000839!3.47e-30!70;CL:0000763!3.97e-30!112;CL:0000049!3.97e-30!112;CL:0000988!4.50e-30!182;CL:0002031!4.69e-29!124;CL:0000860!1.57e-28!45;CL:0002057!1.93e-27!42;CL:0000134!3.34e-09!358;CL:0000945!3.62e-09!24;CL:0000826!3.62e-09!24;CL:0002320!7.83e-09!365;CL:0000034!7.21e-07!444;CL:0000048!8.97e-07!430 | |||
|ontology_enrichment_celltype_v019=CL:0000473;2.48e-20;39!CL:0000234;2.48e-20;39!CL:0000860;2.74e-20;33!CL:0002057;2.74e-20;33!CL:0000576;9.81e-18;48!CL:0000766;2.59e-15;69!CL:0000738;1.14e-09;136!CL:0000945;3.66e-09;24!CL:0002087;5.94e-09;104!CL:0000763;4.16e-08;100 | |||
|ontology_enrichment_celltype_v019_2=CL:0000738,2.10e-37,136;CL:0000766,7.51e-36,72;CL:0002009,1.33e-32,61;CL:0000037,4.54e-32,168;CL:0002194,1.32e-31,59;CL:0000576,1.32e-31,59;CL:0000040,1.32e-31,59;CL:0000559,1.32e-31,59;CL:0000557,1.34e-31,67;CL:0000473,1.72e-31,48;CL:0000234,1.72e-31,48;CL:0002032,1.21e-30,161;CL:0000837,1.21e-30,161;CL:0000988,6.44e-30,177;CL:0000839,6.50e-30,66;CL:0002087,6.73e-30,115;CL:0000763,1.45e-29,108;CL:0000049,1.45e-29,108;CL:0002031,1.90e-28,120;CL:0000860,1.93e-27,42;CL:0002057,1.93e-27,42;CL:0000945,3.62e-09,24;CL:0000826,3.62e-09,24;CL:0000134,9.38e-09,354;CL:0002320,2.15e-08,361 | |||
|ontology_enrichment_development_v019=CL:0002057;6.25e-20;42!CL:0000049;1.36e-08;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!4.96e-38!102;UBERON:0003061!4.96e-38!102;UBERON:0002193!2.62e-37!112;UBERON:0002371!2.34e-29!80;UBERON:0002405!1.26e-26!115;UBERON:0001474!7.59e-26!86;UBERON:0004765!9.14e-21!101;UBERON:0001434!9.14e-21!101;UBERON:0002204!4.20e-12!167;UBERON:0003081!1.63e-09!216;UBERON:0000178!2.60e-08!15;UBERON:0000179!2.60e-08!15;UBERON:0000463!2.60e-08!15;UBERON:0002384!3.38e-08!375;UBERON:0000926!6.77e-08!448;UBERON:0004120!6.77e-08!448;UBERON:0006603!6.77e-08!448 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;2.59e-08;15!UBERON:0000179;2.59e-08;15!UBERON:0000463;2.59e-08;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,1.37e-37,98;UBERON:0003061,1.37e-37,98;UBERON:0002193,8.51e-37,108;UBERON:0002405,2.64e-29,93;UBERON:0002371,5.75e-29,76;UBERON:0001474,2.28e-25,82;UBERON:0004765,6.71e-24,90;UBERON:0001434,7.45e-20,100;UBERON:0002204,3.15e-11,167;UBERON:0003081,6.89e-10,203;UBERON:0000178,2.60e-08,15;UBERON:0000179,2.60e-08,15;UBERON:0000463,2.60e-08,15;UBERON:0002384,8.91e-08,371 | |||
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| ||
|short_description=p1@IFI30 | |||
}} | }} |
Latest revision as of 14:11, 16 September 2015
Short description: | p1@IFI30 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_IFI30_5end |
Coexpression cluster: | C392_Monocytederived_CD14_Macrophage_CD14CD16_Dendritic_Eosinophils_migratory |
Association with transcript: | 0bp_to_ENST00000407280, NM_006332, uc002nic.1_5end |
EntrezGene: | IFI30 |
HGNC: | 5398 |
UniProt: | P13284 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
leukocyte | 2.10e-37 | 136 |
myeloid leukocyte | 7.51e-36 | 72 |
macrophage dendritic cell progenitor | 1.33e-32 | 61 |
hematopoietic stem cell | 4.54e-32 | 168 |
monopoietic cell | 1.32e-31 | 59 |
monocyte | 1.32e-31 | 59 |
monoblast | 1.32e-31 | 59 |
promonocyte | 1.32e-31 | 59 |
granulocyte monocyte progenitor cell | 1.34e-31 | 67 |
defensive cell | 1.72e-31 | 48 |
phagocyte | 1.72e-31 | 48 |
hematopoietic oligopotent progenitor cell | 1.21e-30 | 161 |
hematopoietic multipotent progenitor cell | 1.21e-30 | 161 |
hematopoietic cell | 6.44e-30 | 177 |
myeloid lineage restricted progenitor cell | 6.50e-30 | 66 |
nongranular leukocyte | 6.73e-30 | 115 |
myeloid cell | 1.45e-29 | 108 |
common myeloid progenitor | 1.45e-29 | 108 |
hematopoietic lineage restricted progenitor cell | 1.90e-28 | 120 |
classical monocyte | 1.93e-27 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.93e-27 | 42 |
lymphocyte of B lineage | 3.62e-09 | 24 |
pro-B cell | 3.62e-09 | 24 |
mesenchymal cell | 9.38e-09 | 354 |
connective tissue cell | 2.15e-08 | 361 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 1.37e-37 | 98 |
blood island | 1.37e-37 | 98 |
hemolymphoid system | 8.51e-37 | 108 |
immune system | 2.64e-29 | 93 |
bone marrow | 5.75e-29 | 76 |
bone element | 2.28e-25 | 82 |
skeletal element | 6.71e-24 | 90 |
skeletal system | 7.45e-20 | 100 |
musculoskeletal system | 3.15e-11 | 167 |
lateral plate mesoderm | 6.89e-10 | 203 |
blood | 2.60e-08 | 15 |
haemolymphatic fluid | 2.60e-08 | 15 |
organism substance | 2.60e-08 | 15 |
connective tissue | 8.91e-08 | 371 |