FFCP PHASE1:Hg19::chr14:91976671..91976682,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=55671 | |EntrezGene=55671 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=20219 | |HGNC=20219 | ||
|TSSclassifier=strong | |||
|UniProt=G3V4R3,Q6IN85 | |UniProt=G3V4R3,Q6IN85 | ||
|association_with_transcript=-27bp_to_ENST00000337238,ENST00000428424,ENST00000554511,NM_032560,uc001xzm.2_5end | |association_with_transcript=-27bp_to_ENST00000337238,ENST00000428424,ENST00000554511,NM_032560,uc001xzm.2_5end | ||
|cluster_id=chr14:91976671..91976682,- | |||
|coexpression_cluster_id=C979 | |coexpression_cluster_id=C979 | ||
|description=CAGE_peak_6_at_SMEK1_5end | |description=CAGE_peak_6_at_SMEK1_5end | ||
|id=chr14:91976671..91976682,- | |id=chr14:91976671..91976682,- | ||
|ontology_enrichment_celltype=CL:0002057!4.58e-16!42;CL:0000860!8.72e-16!45;CL:0000738!1.42e-14!140;CL:0000557!7.89e-14!71;CL:0002031!3.50e-13!124;CL:0002087!1.07e-12!119;CL:0000766!2.22e-12!76;CL:0002009!4.32e-12!65;CL:0000839!7.90e-12!70;CL:0002194!3.92e-11!63;CL:0000576!3.92e-11!63;CL:0000040!3.92e-11!63;CL:0000559!3.92e-11!63;CL:0000037!1.06e-09!172;CL:0000566!1.06e-09!172;CL:0000988!1.23e-09!182;CL:0002032!6.13e-09!165;CL:0000837!6.13e-09!165;CL:0000763!3.71e-07!112;CL:0000049!3.71e-07!112 | |ontology_enrichment_celltype=CL:0002057!4.58e-16!42;CL:0000860!8.72e-16!45;CL:0000738!1.42e-14!140;CL:0000557!7.89e-14!71;CL:0002031!3.50e-13!124;CL:0002087!1.07e-12!119;CL:0000766!2.22e-12!76;CL:0002009!4.32e-12!65;CL:0000839!7.90e-12!70;CL:0002194!3.92e-11!63;CL:0000576!3.92e-11!63;CL:0000040!3.92e-11!63;CL:0000559!3.92e-11!63;CL:0000037!1.06e-09!172;CL:0000566!1.06e-09!172;CL:0000988!1.23e-09!182;CL:0002032!6.13e-09!165;CL:0000837!6.13e-09!165;CL:0000763!3.71e-07!112;CL:0000049!3.71e-07!112 | ||
|ontology_enrichment_celltype_v019=CL:0000860;4.76e-41;33!CL:0002057;4.76e-41;33!CL:0000473;8.28e-32;39!CL:0000234;8.28e-32;39!CL:0000576;2.45e-22;48!CL:0000766;7.11e-19;69!CL:0002087;4.62e-08;104!CL:0000738;9.20e-07;136 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,7.90e-45,42;CL:0002057,7.90e-45,42;CL:0000557,4.03e-43,67;CL:0000473,1.76e-41,48;CL:0000234,1.76e-41,48;CL:0000839,8.36e-38,66;CL:0000766,1.79e-36,72;CL:0002009,5.45e-36,61;CL:0002194,1.97e-34,59;CL:0000576,1.97e-34,59;CL:0000040,1.97e-34,59;CL:0000559,1.97e-34,59;CL:0002031,1.06e-28,120;CL:0000738,8.58e-26,136;CL:0000763,2.14e-25,108;CL:0000049,2.14e-25,108;CL:0002087,4.29e-23,115;CL:0002032,8.48e-22,161;CL:0000837,8.48e-22,161;CL:0000037,1.72e-20,168;CL:0000988,2.96e-20,177;CL:0000134,8.71e-10,354;CL:0002320,2.17e-09,361;CL:0000219,5.33e-08,386;CL:0000034,1.87e-07,441 | |||
|ontology_enrichment_development_v019=CL:0002057;2.87e-32;42!CL:0000049;2.41e-07;108 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!1.75e-11!80;UBERON:0001474!2.08e-11!86;UBERON:0002390!3.67e-11!102;UBERON:0003061!3.67e-11!102;UBERON:0002193!1.58e-10!112;UBERON:0002405!2.35e-10!115;UBERON:0004765!3.85e-09!101;UBERON:0001434!3.85e-09!101 | |ontology_enrichment_uberon=UBERON:0002371!1.75e-11!80;UBERON:0001474!2.08e-11!86;UBERON:0002390!3.67e-11!102;UBERON:0003061!3.67e-11!102;UBERON:0002193!1.58e-10!112;UBERON:0002405!2.35e-10!115;UBERON:0004765!3.85e-09!101;UBERON:0001434!3.85e-09!101 | ||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,7.96e-40,76;UBERON:0001474,6.59e-39,82;UBERON:0004765,1.08e-34,90;UBERON:0002390,4.32e-31,98;UBERON:0003061,4.32e-31,98;UBERON:0002405,4.89e-31,93;UBERON:0001434,2.26e-30,100;UBERON:0002193,2.02e-27,108;UBERON:0003081,1.21e-16,203;UBERON:0002204,8.88e-15,167;UBERON:0002384,7.53e-09,371;UBERON:0000926,4.88e-08,315;UBERON:0004120,4.88e-08,315;UBERON:0006603,4.88e-08,315 | |||
|phase1_expression=0.181678379270557,0,0.140954404095971,0,0,0.872338524100369,0,0.631719873426831,0.261185628199839,0,0,0,0,0.123766352960047,0,0,0.602694528023977,0,0,0,0,0,0,0.136874425072884,0.125542639594803,0.229240217243854,0.328402357799783,0.157421562627358,0.393364276848904,0.383829398097213,1.08371286321253,0,0,0,0.232401601740905,0.568676929949686,0,2.21598163412751,2.60707781711184,1.30206522429511,0.447830948479849,0,0.515151135268373,0,1.13362783106643,0.485168122375632,0.232429036905685,1.6446715520873,2.47765096716083,8.63077176966451,7.94098190240212,4.49316236788312,1.72372840368309,3.22742341791913,1.35426486594342,1.12945403725563,0.545812300115692,1.12361742222542,2.44867113896722,0.962787081228281,3.83602275479425,2.63881040149373,1.99463657621632,3.83602275479425,0.580418477257168,1.70215567407342,1.86846674698672,12.8136819280939,7.30076085788282,7.38442071997397,0,1.10483290796269,0.949387162322653,0.211255286311942,0.425208599930087,0.209658645508376,0.336985893439485,0.150176892841506,0,0.285012743741249,0,0.182664153764634,0,0,0,0,0,0,0,0,0.569212969109448,1.17447437874188,0,1.32171328579026,2.24203425192614,0,0.983548850569165,0.393010762749165,3.49522548299166,0.167186495390678,0.977766799900771,0.473447805734733,0,0,0.294605907474837,0.443067789167242,0.270803863765016,0.384273959177026,0.260118695119756,0.328875809207352,0,0.579606171470105,0.14828656316206,0,0,0,0.383220493601921,0,0.506039384039006,0,0,0,0.150575119077773,0.255973222308837,0,0.236777252044017,0.821127996921047,1.20964045934839,0.802320587350522,1.01377082717959,0,0,0,0,0,0.144846518960824,0,0,0,0,0.087834785693126,0.458426764241994,0,0.370784442784429,0,0.522389211897802,1.19662164466979,0,0,0.371457501329565,0.198762407366705,0,0.347140501607594,0,0.419499436209906,0.275118041940067,0.417989933073621,0.516833518338658,0,0.33472061276467,0,0,0,0,0,0.267899184852239,1.57170560838319,0.337834441449967,0,0,0.366403487860815,0,0,0,0,0.12663051166458,0.397227542439656,0.573673241497627,0,0,0,0,0,0.269421344139376,0,0,0,0.234321431833797,0.624320153660641,0,0,0.117434498643765,0,0,0.204154171254893,0,0.413303124703062,0,0,0,0.718618141816238,0,0,0.277064115484183,0,0,0.150238058906597,0,0,0.213557388818567,0.423863802319124,0.600182192168805,0.412210116953756,0,0.37223371266318,0,0,0,0,0,0.355009592516614,0.10075209822764,0,0.193260853163297,0.272746120590835,0,0,0,0,0.10366105501537,0,0.36497735907583,0,0,0,0,0.721879481669586,0,0.168584690078102,0.241011029883482,0.330881918197182,0,0.237270619111097,0.269662616320329,0.196221465125346,0,0,0,0,0,0,0.982827216677626,1.18157981336281,0.441463099414651,0.368965315629341,0.171567810298526,0.219500570817251,1.1240175325762,0,0,0,0,0,0,0.469634776943287,0.433099343283221,0,0,0,0.858486162094873,0,0.702012795417713,0.148631162288728,0,0,0.283550194484773,0.358234090811393,0,0,10.8385912337108,0.352193736052904,1.03664057770386,0,1.00993946741104,0.126995788584338,0,0,0,0.102827492703324,0.300343057843917,0.285826432630578,0.112131084345361,0,0.07333828582095,0.904902010304444,0,0,0,0,0.257207374262142,0,0,0.285955987316295,0,1.64648067356154,0.325736184293735,0.355391948742546,0,0,0,0.099972991182057,0,1.00451418286425,0,0.239624855491583,0,0,0,0,0.537182889719687,0,1.18218456121156,0.215627574859517,0.256686072559497,0.254094624222463,0,0.773288812777695,0,0.637938751653163,0.749007023947182,0,0.414415513436035,0,0,0.271265023699736,0.207970861530807,0,0.157702415033935,0.35142424497814,0.300946099727719,0,0,0,0.368738337083406,0.173767228936166,0,0,0.82707210449155,0.647142602455851,0.960548020230999,0.606255142892519,0,0.30239029332968,0.496215615637554,0,0,0,0,0.160853921143607,0,0,0,0.0821271560138091,0,0.232420756919918,0,0.200506470303285,0.0920809889358963,0.114814448164607,0.546273504020151,0.131124414959424,0,0.15403067420883,0,0,0.211103257785751,0,0.340187410553031,0.215915916102139,0,0,0,0,0,0,0.219259876645935,0,0,0,0,1.03041011647722,0,0.165018999841176,0.574265537996172,0,0,0.096670718292122,0.154048617114644,0,0.137836572484531,0.107420244868274,0.145016693914229,0,0.178064071293475,0.330569830721956,0.192190067365106,0.638063562472921,0.6069466851333,0.464845549297286,0.62962469366128,0,0.308033580176089,0,0,0,0.143124886741991,0,0,0,0.511795582622668,0.42793898803392,0,0,0,0.274537029736055,0.235624804691373,0.202182481573316,0,0.421258456238981,0,0.243713489631284,0,0.136499911407986,0.282810863907425,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211107635297664,0.329294892959902,0,0,0.0962221127255121,0,0,1.12972560932135,0,1.68471475667626,0,0,0,0,0,0,0.411362273086194,0,0,0,0.213648142254946,0,0.245040215981032,0.185803175125719,0.28853842595289,0.355709216742071,0.318852545457645,0,0,0,0,0,0.228234679033192,0.47003968731907,0,0.169291777801603,0.481764225311099,0,0,0,0,0,0,0,0.278406173895242,0,0.270455678475983,0,0,0.748562161632879,0,0.485442086998054,0.111443384277478,0,0.95497793895076,0,0,0,0.140669416410513,0,0,0,0.398495976502139,0,0.503865495708552,0,0.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| ||
|short_description=p6@SMEK1 | |short_description=p6@SMEK1 | ||
}} | }} |
Latest revision as of 13:36, 16 September 2015
Short description: | p6@SMEK1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_SMEK1_5end |
Coexpression cluster: | C979_Mast_CD14_Eosinophils_immature_Neutrophils_CD4_Basophils |
Association with transcript: | -27bp_to_ENST00000337238, ENST00000428424, ENST00000554511, NM_032560, uc001xzm.2_5end |
EntrezGene: | SMEK1 |
HGNC: | 20219 |
UniProt: | G3V4R3Q6IN85 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 7.90e-45 | 42 |
CD14-positive, CD16-negative classical monocyte | 7.90e-45 | 42 |
granulocyte monocyte progenitor cell | 4.03e-43 | 67 |
defensive cell | 1.76e-41 | 48 |
phagocyte | 1.76e-41 | 48 |
myeloid lineage restricted progenitor cell | 8.36e-38 | 66 |
myeloid leukocyte | 1.79e-36 | 72 |
macrophage dendritic cell progenitor | 5.45e-36 | 61 |
monopoietic cell | 1.97e-34 | 59 |
monocyte | 1.97e-34 | 59 |
monoblast | 1.97e-34 | 59 |
promonocyte | 1.97e-34 | 59 |
hematopoietic lineage restricted progenitor cell | 1.06e-28 | 120 |
leukocyte | 8.58e-26 | 136 |
myeloid cell | 2.14e-25 | 108 |
common myeloid progenitor | 2.14e-25 | 108 |
nongranular leukocyte | 4.29e-23 | 115 |
hematopoietic oligopotent progenitor cell | 8.48e-22 | 161 |
hematopoietic multipotent progenitor cell | 8.48e-22 | 161 |
hematopoietic stem cell | 1.72e-20 | 168 |
hematopoietic cell | 2.96e-20 | 177 |
mesenchymal cell | 8.71e-10 | 354 |
connective tissue cell | 2.17e-09 | 361 |
motile cell | 5.33e-08 | 386 |
stem cell | 1.87e-07 | 441 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 7.96e-40 | 76 |
bone element | 6.59e-39 | 82 |
skeletal element | 1.08e-34 | 90 |
hematopoietic system | 4.32e-31 | 98 |
blood island | 4.32e-31 | 98 |
immune system | 4.89e-31 | 93 |
skeletal system | 2.26e-30 | 100 |
hemolymphoid system | 2.02e-27 | 108 |
lateral plate mesoderm | 1.21e-16 | 203 |
musculoskeletal system | 8.88e-15 | 167 |
connective tissue | 7.53e-09 | 371 |
mesoderm | 4.88e-08 | 315 |
mesoderm-derived structure | 4.88e-08 | 315 |
presumptive mesoderm | 4.88e-08 | 315 |