FFCP PHASE1:Hg19::chr13:111358426..111358487,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr13:111358426..111358487,- to FFCP PHASE1:Hg19::chr13:111358426..111358487,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=79587 | |EntrezGene=79587 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=25695 | |HGNC=25695 | ||
|TSSclassifier=strong | |||
|UniProt=F5H623,F5H7A3,B7Z7E6,Q9HA77 | |UniProt=F5H623,F5H7A3,B7Z7E6,Q9HA77 | ||
|association_with_transcript=0bp_to_ENST00000537394,ENST00000542993,NM_024537,uc001vrd.2_5end | |||
|cluster_id=chr13:111358426..111358487,- | |||
|description=CAGE_peak_1_at_CARS2_5end | |||
|id=chr13:111358426..111358487,- | |||
|ontology_enrichment_celltype=CL:0002371!4.19e-18!591;CL:0000144!8.50e-16!625;CL:0000548!8.94e-15!679;CL:0000004!8.94e-15!679;CL:0000255!8.94e-15!679;CL:0000012!1.75e-14!682;CL:0000055!1.57e-12!180;CL:0000003!2.09e-11!722;CL:0000183!1.95e-10!59;CL:0000680!3.58e-10!57;CL:0000056!3.58e-10!57;CL:0000355!3.58e-10!57;CL:0000187!1.53e-09!54;CL:0000723!6.39e-09!436;CL:0000048!1.45e-08!430;CL:0000034!1.14e-07!444;CL:0000057!3.58e-07!75;CL:0000220!3.64e-07!246;CL:0000393!3.71e-07!60;CL:0000211!3.71e-07!60;CL:0000192!3.88e-07!42;CL:0000514!3.88e-07!42;CL:0000063!3.93e-07!578;CL:0000222!7.29e-07!119;CL:0002321!9.24e-07!248 | |||
|ontology_enrichment_celltype_v019=CL:0000187;6.25e-07;55 | |||
|ontology_enrichment_celltype_v019_2=CL:0000680,1.61e-10,58;CL:0000056,1.61e-10,58;CL:0000355,1.61e-10,58;CL:0000187,6.94e-10,55;CL:0000723,6.78e-09,433;CL:0000048,1.53e-08,427;CL:0000034,1.21e-07,441;CL:0000192,1.81e-07,43;CL:0000514,1.81e-07,43;CL:0000393,1.85e-07,61;CL:0000211,1.85e-07,61;CL:0000222,3.05e-07,121;CL:0002321,4.47e-07,250;CL:0000057,6.42e-07,76 | |||
|ontology_enrichment_development_v019=CL:0000355;8.16e-07;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003104!5.28e-11!238;UBERON:0009142!5.28e-11!238;UBERON:0005256!7.37e-11!143;UBERON:0004290!1.50e-10!70;UBERON:0000486!1.83e-10!82;UBERON:0001134!3.12e-10!61;UBERON:0002036!3.12e-10!61;UBERON:0003082!3.12e-10!61;UBERON:0000914!4.66e-10!83;UBERON:0002329!4.66e-10!83;UBERON:0003077!4.66e-10!83;UBERON:0003059!4.66e-10!83;UBERON:0007282!4.66e-10!83;UBERON:0009618!4.66e-10!83;UBERON:0007285!4.66e-10!83;UBERON:0002385!1.10e-09!63;UBERON:0001015!1.10e-09!63;UBERON:0000383!1.10e-09!63 | |||
|ontology_enrichment_uberon_v019=UBERON:0000353;5.49e-07;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007503,3.81e-13,78;UBERON:0003104,5.42e-11,160;UBERON:0009142,5.42e-11,160;UBERON:0002329,6.94e-11,71;UBERON:0003059,6.94e-11,71;UBERON:0007282,6.94e-11,71;UBERON:0004290,6.94e-11,71;UBERON:0009618,6.94e-11,71;UBERON:0000486,8.72e-11,83;UBERON:0001134,1.42e-10,62;UBERON:0002036,1.42e-10,62;UBERON:0003082,1.42e-10,62;UBERON:0003077,2.16e-10,72;UBERON:0007285,2.16e-10,72;UBERON:0007524,5.03e-10,73;UBERON:0002385,5.10e-10,64;UBERON:0001015,5.10e-10,64;UBERON:0000383,5.10e-10,64;UBERON:0005256,4.24e-09,122;UBERON:0000353,5.40e-07,15 | |||
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| ||
|short_description=p1@CARS2 | |||
}} | }} |
Latest revision as of 13:18, 16 September 2015
Short description: | p1@CARS2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_CARS2_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000537394, ENST00000542993, NM_024537, uc001vrd.2_5end |
EntrezGene: | CARS2 |
HGNC: | 25695 |
UniProt: | F5H623F5H7A3B7Z7E6Q9HA77 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
muscle precursor cell | 1.61e-10 | 58 |
myoblast | 1.61e-10 | 58 |
multi-potent skeletal muscle stem cell | 1.61e-10 | 58 |
muscle cell | 6.94e-10 | 55 |
somatic stem cell | 6.78e-09 | 433 |
multi fate stem cell | 1.53e-08 | 427 |
stem cell | 1.21e-07 | 441 |
smooth muscle cell | 1.81e-07 | 43 |
smooth muscle myoblast | 1.81e-07 | 43 |
electrically responsive cell | 1.85e-07 | 61 |
electrically active cell | 1.85e-07 | 61 |
mesodermal cell | 3.05e-07 | 121 |
embryonic cell | 4.47e-07 | 250 |
fibroblast | 6.42e-07 | 76 |
Ontology term | p-value | n |
---|---|---|
epithelial vesicle | 3.81e-13 | 78 |
mesenchyme | 5.42e-11 | 160 |
entire embryonic mesenchyme | 5.42e-11 | 160 |
somite | 6.94e-11 | 71 |
presomitic mesoderm | 6.94e-11 | 71 |
presumptive segmental plate | 6.94e-11 | 71 |
dermomyotome | 6.94e-11 | 71 |
trunk paraxial mesoderm | 6.94e-11 | 71 |
multilaminar epithelium | 8.72e-11 | 83 |
skeletal muscle tissue | 1.42e-10 | 62 |
striated muscle tissue | 1.42e-10 | 62 |
myotome | 1.42e-10 | 62 |
paraxial mesoderm | 2.16e-10 | 72 |
presumptive paraxial mesoderm | 2.16e-10 | 72 |
dense mesenchyme tissue | 5.03e-10 | 73 |
muscle tissue | 5.10e-10 | 64 |
musculature | 5.10e-10 | 64 |
musculature of body | 5.10e-10 | 64 |
trunk mesenchyme | 4.24e-09 | 122 |
parenchyma | 5.40e-07 | 15 |