FFCP PHASE1:Hg19::chrX:80377216..80377227,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chrX:80377216..80377227,-
|short_description=p4@HMGN5
|description=CAGE_peak_4_at_HMGN5_5end
|association_with_transcript=-29bp_to_ENST00000447319,ENST000004912...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=79366 | |EntrezGene=79366 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=8013 | |HGNC=8013 | ||
|TSSclassifier=strong | |||
|UniProt=Q5JSK9 | |UniProt=Q5JSK9 | ||
|association_with_transcript=-29bp_to_ENST00000447319,ENST00000491275_5end | |||
|cluster_id=chrX:80377216..80377227,- | |||
|description=CAGE_peak_4_at_HMGN5_5end | |||
|id=chrX:80377216..80377227,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0002322;1.47e-12;5!CL:0000945;3.48e-10;24 | |||
|ontology_enrichment_celltype_v019_2=CL:0002322,3.38e-12,5;CL:0000945,4.13e-10,24;CL:0000826,4.13e-10,24;CL:0002032,2.21e-09,161;CL:0000837,2.21e-09,161;CL:0000037,2.45e-09,168;CL:0000988,2.06e-08,177;CL:0000542,1.20e-07,53;CL:0000051,1.20e-07,53;CL:0000838,8.01e-07,52 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:2531!1.25e-15!51;DOID:0060083!1.25e-15!51;DOID:1240!3.20e-13!39;DOID:162!3.66e-13!235;DOID:14566!4.81e-13!239;DOID:8692!1.16e-11!31;DOID:0050686!1.90e-10!137 | |||
|ontology_enrichment_disease_v019=DOID:1240;7.01e-19;39!DOID:2531;1.25e-18;51!DOID:0060083;1.25e-18;51!DOID:8692;2.36e-17;31!DOID:0060058;1.40e-08;10 | |||
|ontology_enrichment_disease_v019_2=DOID:2531,4.15e-29,51;DOID:0060083,4.15e-29,51;DOID:1240,1.20e-23,39;DOID:8692,6.46e-18,31;DOID:0050686,3.33e-15,137;DOID:162,6.17e-11,235;DOID:14566,1.84e-10,239;DOID:0060058,1.86e-08,10 | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019=UBERON:0003296;1.24e-10;4!UBERON:0010133;1.24e-10;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003296,6.30e-11,4;UBERON:0010133,6.30e-11,4 | |||
|phase1_expression=0,0.428201047781966,0.140954404095971,0,0,0,0,0.631719873426831,0,0,0,0,0,0,0,0,0,0,0,0.246242116153576,0,0,0.286235987131057,0.273748850145768,0.376627918784408,2.59805579543034,3.11982239909794,3.46327437780189,0,0.383829398097213,0,0,0,0.369754010166788,4.02829443017569,0.284338464974843,0,0,0.401088894940283,0.217010870715852,0.223915474239924,0,0,0.145398238779565,0,0.242584061187816,0,0,0,0,0,0.236482229888585,0,0,0,0.376484679085209,0,0.449446968890169,0,0,0,0,0,0,0.290209238628584,0,0,0,0,0.217188844705117,0,0,0,0.211255286311942,0,0,0,0.150176892841506,0,0,0.19891667719909,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.263384084775077,0,0,0,0,0,0,1.94826728407911,0.111410456885174,0,0,0,0.128091319725675,0,0.493313713811028,0,0.289803085735052,0.14828656316206,0,0,0.339928028092699,0,0,0,0.318565414324097,0,0,0,0,1.24930726552346,0,0.821127996921047,0,0,0.144824403882799,0,0.670700859703636,0,0,0,0,0,0,0.189069634328136,0,0.263504357079378,0.0654895377488563,0,0,0,0,0,0.476981248610684,0,0,0,0,0,0,0,0.550236083880135,0.208994966536811,0.258416759169329,0.35576626268671,0,0,0,0.24406205754817,0,0,0.625098097988558,0.22452937262617,0.563057402416611,0,0,0,0,0,0,0,0,0.132409180813219,0,0,0.560677600142307,0,0.24666754841716,0,0,0,0.151357427644931,0,0,0,0,0,0.117434498643765,0.161872944368132,0.280901613404497,0.204154171254893,0.122834317311768,0.103325781175765,0,0,0,0,0.336672227908132,0.125118519871964,0.277064115484183,0.438977620880838,0,0,0.226864366320042,0,0,0,0,0.103052529238439,0.257640540045629,0,0.168776332241266,0,0,0.184099797284599,0,0,0.10075209822764,0,0,0.818238361772504,0,2.43947412259191,2.38553582978673,2.09149097165133,1.0366105501537,2.27088765788066,1.82488679537915,0,0,0,0,0,0.946454400318751,0.337169380156203,0.964044119533928,0.772057809126758,0.435758888184812,0.71181185733329,0.943819157121151,0.98110732562673,1.15424147083917,0,0,0,0,0,0,0,1.32438929824395,0,0.171567810298526,0.329250856225877,0,0.301586917234893,0.370353780634118,0,0,0,0.463721619900307,0.117408694235822,0,0,0.190254152234598,0,0,0,0,0.148631162288728,0,0.16798212819886,0.283550194484773,0.179117045405697,0,0,15.7652236126702,1.32072651019839,0,0.432359860250884,0.6312121671319,0.380987365753014,0,1.17217447210047,0,0.205654985406647,0.300343057843917,0.571652865261156,0.112131084345361,0,0.22001485746285,0.258543431515556,0,0,0.531876233169741,0,0,0,0,0,0,0,0.325736184293735,0.355391948742546,0,0.301439377059586,0.871533458600294,0.299918973546171,0,0.502257091432126,0,0,0,0,0.144781306667579,0.205476322550383,0.358121926479791,0,0.197030760201927,0,0,1.01637849688985,0,0,0,0,0,0,0,0.12269149171914,0.500170521059677,0,0,0,0,0,0,0,1.03473071292505,0,0,0.260650843404249,0.195801157462741,0,0.206768026122887,0,0.106727557803444,0,0,0,0,0.153461973288062,0,0.128139149255701,0,0.160853921143607,0,0,0,0.246381468041427,0.519254429183621,0.116210378459959,0.241718899183244,0,0.0920809889358963,0.114814448164607,0,0.131124414959424,0,0.539107359730903,0,0,0.422206515571503,0,0,0,0,0,0,0.509752546090077,0,0.447749509444357,0.877039506583738,1.8300481571743,0,0,0.325378394664303,0.618246069886334,0.915694648183434,1.23764249880882,0,0,0,0.096670718292122,0.154048617114644,0.460511024178389,0.275673144969061,0.214840489736547,0,0,0.445160178233687,0,0.192190067365106,0,0,0,0,0,0,0,0,0.37064843820784,0,0,0.316379424718726,0.190630193923825,0,0,0,0,0.179872457583315,0.274537029736055,0.117812402345686,0.202182481573316,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30982349809975,0,0.143411352204052,0.0982490410131212,0,0,0,0,0.379473173765715,0,0.0962221127255121,0,0,0.282431402330337,0,0,0,0.229723400206959,0,0,0,0,0,0,0,0,0.320472213382419,0,0.735120647943095,1.30062222588003,2.30830740762312,1.42283686696828,1.11598390910176,0,0,0.211673582723883,1.62310970137278,1.68478306868075,0.912938716132769,2.35019843659535,0,0.677167111206413,0.481764225311099,0.605399121573143,0,2.40453741329035,1.22896305723383,2.46043718681657,2.16903884225481,0.390776190804081,3.06246791284767,1.23087398947712,1.35227839237992,2.99764771198038,1.4098700508785,0,0.146508179271894,0.485442086998054,4.45773537109913,0,0.23874448473769,0.296964680832639,0.307160702099232,0.994147647766298,0.703347082052564,0.222617410045812,0,0,0.19924798825107,0,1.0077309914171,0.409074730008619,1.10776324914963,0,0.359473404589307,0,0.511572370226872,0.0986434056369336,0,0,0.969332746095218,0.371072392647405,0,0,0.962059999958153,0.724999575434793,0.341380344856499,1.77977555204936,0.472775363535873,0,0.874813840149763,0,0,0.241192877250816,0,0,0,0.219385397153973,0.435753854075961,0,0.538651809526579,0,0.46112780877612,0.807818799687949,0,0,0.366390373607449,0,0,0.941881538370149,1.16348177330109,1.80476528493745,1.37243774022418,1.67821586975843,0.948768663620925,1.74830236878417,1.05499032264014,0.163232808159148,0.141353071433941,3.46221823587346,0,0.0884575645033392,0,0.889563386041866,0.86494757262552,0.522109747527277,0.404406797884062,0,0.234264445725339,0.7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| ||
|short_description=p4@HMGN5 | |||
}} | }} |
Latest revision as of 12:42, 16 September 2015
Short description: | p4@HMGN5 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_HMGN5_5end |
Coexpression cluster: | NA |
Association with transcript: | -29bp_to_ENST00000447319, ENST00000491275_5end |
EntrezGene: | HMGN5 |
HGNC: | 8013 |
UniProt: | Q5JSK9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic stem cell | 3.38e-12 | 5 |
lymphocyte of B lineage | 4.13e-10 | 24 |
pro-B cell | 4.13e-10 | 24 |
hematopoietic oligopotent progenitor cell | 2.21e-09 | 161 |
hematopoietic multipotent progenitor cell | 2.21e-09 | 161 |
hematopoietic stem cell | 2.45e-09 | 168 |
hematopoietic cell | 2.06e-08 | 177 |
lymphocyte | 1.20e-07 | 53 |
common lymphoid progenitor | 1.20e-07 | 53 |
lymphoid lineage restricted progenitor cell | 8.01e-07 | 52 |
Ontology term | p-value | n |
---|---|---|
gland of diencephalon | 6.30e-11 | 4 |
neuroendocrine gland | 6.30e-11 | 4 |
Ontology term | p-value | n |
---|---|---|
hematologic cancer | 4.15e-29 | 51 |
immune system cancer | 4.15e-29 | 51 |
leukemia | 1.20e-23 | 39 |
myeloid leukemia | 6.46e-18 | 31 |
organ system cancer | 3.33e-15 | 137 |
cancer | 6.17e-11 | 235 |
disease of cellular proliferation | 1.84e-10 | 239 |
lymphoma | 1.86e-08 | 10 |