FFCP PHASE1:Hg19::chr13:110802350..110802403,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1282 | |EntrezGene=1282 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_noncoding | |||
|HGNC=2202 | |HGNC=2202 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=305bp_to_M10941_5end | |association_with_transcript=305bp_to_M10941_5end | ||
|cluster_id=chr13:110802350..110802403,- | |||
|coexpression_cluster_id=C566 | |||
|description=CAGE_peak_3_at_COL4A1_5end | |description=CAGE_peak_3_at_COL4A1_5end | ||
|id=chr13:110802350..110802403,- | |id=chr13:110802350..110802403,- | ||
|ontology_enrichment_celltype=CL:0000222!2.97e-16!119;CL:0000055!7.38e-13!180;CL:0000183!3.75e-09!59;CL:0000213!2.60e-08!57;CL:0000215!2.60e-08!57;CL:0000680!6.34e-08!57;CL:0000056!6.34e-08!57;CL:0000355!6.34e-08!57;CL:0002321!7.20e-08!248;CL:0000220!8.71e-08!246;CL:0000393!2.27e-07!60;CL:0000211!2.27e-07!60;CL:0002139!2.46e-07!24;CL:0000187!3.08e-07!54;CL:0000115!3.98e-07!35 | |ontology_enrichment_celltype=CL:0000222!2.97e-16!119;CL:0000055!7.38e-13!180;CL:0000183!3.75e-09!59;CL:0000213!2.60e-08!57;CL:0000215!2.60e-08!57;CL:0000680!6.34e-08!57;CL:0000056!6.34e-08!57;CL:0000355!6.34e-08!57;CL:0002321!7.20e-08!248;CL:0000220!8.71e-08!246;CL:0000393!2.27e-07!60;CL:0000211!2.27e-07!60;CL:0002139!2.46e-07!24;CL:0000187!3.08e-07!54;CL:0000115!3.98e-07!35 | ||
|ontology_enrichment_celltype_v019=CL:1000449;4.43e-08;15!CL:0000115;1.25e-07;36!CL:0002138;2.30e-07;6!CL:0002139;8.72e-07;24 | |||
|ontology_enrichment_celltype_v019_2=CL:0000222,4.37e-13,121;CL:0000213,4.07e-09,58;CL:0000215,4.07e-09,58;CL:0000115,1.32e-08,36;CL:1000449,4.04e-08,15;CL:0002078,1.21e-07,45;CL:0005020,2.31e-07,6;CL:0002138,2.31e-07,6;CL:0005022,2.31e-07,6;CL:0002139,7.83e-07,24 | |||
|ontology_enrichment_development_v019=CL:0005022;2.30e-07;6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002049!4.11e-16!79;UBERON:0007798!4.11e-16!79;UBERON:0001009!6.75e-16!113;UBERON:0003914!1.95e-15!118;UBERON:0004535!2.90e-15!110;UBERON:0004872!2.82e-14!84;UBERON:0000055!4.14e-13!69;UBERON:0001981!4.81e-10!60;UBERON:0007500!4.81e-10!60;UBERON:0004537!4.81e-10!60;UBERON:0006965!4.81e-10!60;UBERON:0000490!6.81e-10!138;UBERON:0005256!1.04e-09!143;UBERON:0002385!1.89e-09!63;UBERON:0001015!1.89e-09!63;UBERON:0000383!1.89e-09!63;UBERON:0000477!3.15e-09!286;UBERON:0003103!4.06e-09!69;UBERON:0001134!4.56e-09!61;UBERON:0002036!4.56e-09!61;UBERON:0003082!4.56e-09!61;UBERON:0004111!9.89e-09!241;UBERON:0000468!2.23e-08!659;UBERON:0000119!3.41e-08!312;UBERON:0002100!8.09e-08!216;UBERON:0000483!1.24e-07!309;UBERON:0004876!1.28e-07!20;UBERON:0001637!2.39e-07!42;UBERON:0003509!2.39e-07!42;UBERON:0004572!2.39e-07!42;UBERON:0003886!8.57e-07!63 | |||
|ontology_enrichment_uberon_v019=UBERON:0006555;4.43e-08;15!UBERON:0004819;4.43e-08;15!UBERON:0001285;4.43e-08;15!UBERON:0007684;4.43e-08;15!UBERON:0002049;2.71e-07;75!UBERON:0007798;2.71e-07;75!UBERON:0003688;4.57e-07;6!UBERON:0002358;4.57e-07;6!UBERON:0003684;4.57e-07;6!UBERON:0001178;4.57e-07;6!UBERON:0003914;4.88e-07;74 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002049,3.17e-14,78;UBERON:0007798,3.17e-14,78;UBERON:0004535,3.18e-14,109;UBERON:0001009,5.10e-14,112;UBERON:0003914,5.31e-13,117;UBERON:0004872,1.90e-11,83;UBERON:0000055,7.50e-11,68;UBERON:0004211,4.04e-08,15;UBERON:0009773,4.04e-08,15;UBERON:0001231,4.04e-08,15;UBERON:0001285,4.04e-08,15;UBERON:0007684,4.04e-08,15;UBERON:0004208,4.04e-08,15;UBERON:0007500,1.46e-07,59;UBERON:0001981,1.46e-07,59;UBERON:0004537,1.46e-07,59;UBERON:0006965,1.46e-07,59;UBERON:0006555,2.25e-07,16;UBERON:0004819,2.25e-07,16;UBERON:0002100,2.97e-07,199;UBERON:0003688,4.33e-07,6;UBERON:0002358,4.33e-07,6;UBERON:0003684,4.33e-07,6;UBERON:0001178,4.33e-07,6;UBERON:0003104,6.52e-07,160;UBERON:0009142,6.52e-07,160;UBERON:0001637,6.95e-07,42;UBERON:0003509,6.95e-07,42;UBERON:0004572,6.95e-07,42;UBERON:0000353,9.37e-07,15 | |||
|phase1_expression=7.63049192936338,10.2768251467672,7.89344662937438,19.0139266870948,17.8784437770915,21.8084631025092,30.3959853801973,0,6.00726944859629,1.72013755551056,1.39560233594486,0.873765488520689,1.58260186937072,0,0.331397375727916,2.6893005858071,0.602694528023977,2.92124036154949,2.43966399395253,0.369363174230364,0.612002073732759,0.313454721478088,1.14494394852423,0.410623275218653,2.51085279189606,0,0,0,0,0,0,0.919421224478927,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.87613732627923,2.01210257911091,2.9408389224012,1.80719576192283,1.00267582127178,1.01392563272577,0,1.94653948121054,0.756278537312543,1.10864698731282,2.10803485663503,0.261958150995425,0.364295288292542,0.370784442784429,0,0,0,0,0,0,0.39752481473341,0.860234595106124,1.04142150482278,0.56530794192401,1.67799774483962,3.02629846134074,1.46296476575767,5.16833518338658,6.75955899104749,13.3888245105868,8.05658634218294,3.04108842287405,11.470916704764,1.47065232138347,8.91156142669936,0.982297011124877,0.22452937262617,0.112611480483322,0,0,1.64881569537367,0,0,0,15.4061305025549,3.79891534993739,0.132409180813219,4.87622255272983,0.709336764396714,0,8.5399196583764,11.5933747756065,0.933633106199299,8.08264032418128,3.26923806226917,8.77873080340602,19.58998143232,0,0.624320153660641,0,0.448346041655403,0,0,0,0.408308342509787,0,0.206651562351531,0,2.71993622206413,2.73048408581408,0.718618141816238,0,0.250237039743928,0,0,0.919463387397059,2.10333282469236,5.89847352432109,4.66413052791041,1.92201649936711,2.54318281391474,0.900273288253207,0.206105058476878,3.86460810068444,1.11670113798954,2.19409231913646,1.85130309806277,4.29137416214995,1.01254888506529,0.161646056818812,6.39017266529906,1.30977727695932,1.01736355386293,0,0,0.286804595389004,0.365921118388786,0.265059536642971,0.464775771478074,1.0366105501537,0,0.36497735907583,0,0,0,0,0,0.473227200159376,0,0.241011029883482,0,0.217879444092406,0,0,0,0.38474715694639,5.90524363699719,2.80483547606892,0.8231480226628,2.94017422771084,0,0,1.18157981336281,0,0,1.3725424823882,0,0,0.201057944823262,0.370353780634118,0,0,4.3299402607582,0,4.69634776943287,10.8274835820805,19.4453915282177,13.5080448086565,0,0,0,0,0,0,0.335964256397719,0,0.179117045405697,0.290633938513962,1.15014803749563,0,0,0,0,0,0,0,0,0,0.719792448923265,0.300343057843917,0,1.00917975910825,6.5394010324992,1.466765716419,3.23179289394444,0,8.45302752556,13.5628439458284,7.28052058379563,0,0,0.266422179016099,7.86378965119812,5.96883765930587,0,2.60588947434988,4.26470338491055,2.37585561880029,0.904318131178758,1.74306691720059,2.49932477955143,0,0,0,11.7416179190875,16.0806710167759,0,2.46128221334885,1.43833425785268,0.895304816199478,0,0,0,0,2.28685161800217,1.30139853857622,0.773288812777695,0.335032530668698,1.27587750330633,0,0,0,0.49076596687656,0,0,6.23912584592421,3.92543775353756,4.25796520591624,0.937131319941706,0.601892199455438,0,2.0694614258501,1.32845119707087,0.921845842708516,0.0868836144680828,10.9648648179135,12.3531632571908,0,0,0,0,0,0.604780586659361,4.21783273291921,3.06923946576125,3.64858122762996,3.97231362692673,4.09365799253363,14.1551450606375,8.90508398669946,0,0.177561725313127,0.164254312027618,0.519254429183621,0.116210378459959,0,3.40860999515584,0,1.03333003348146,1.0925470080403,1.04899531967539,2.70719767744447,2.54150612444569,1.56869953835371,7.30696123266303,6.33309773357254,5.68666920354483,3.57196781080683,7.77297297967702,43.183630753281,1.08378575017541,5.51858751240339,0.509752546090077,0,2.68649705666614,0,0,0,2.29610251989794,0.325378394664303,1.64865618636356,0,0,0.574265537996172,0,3.21367859688319,0.193341436584244,0.770243085573222,0.460511024178389,0.689182862422653,0.214840489736547,0.290033387828457,0.852266274161009,0.534192213880424,0.165284915360978,0.576570202095319,0.638063562472921,0,0,2.51849877464512,0.6970372701606,0.616067160352178,2.12922412126809,0,1.11194531462352,2.57624796135584,4.09374206295634,9.17500331684305,6.48142659341004,0.511795582622668,0.855877976067841,0,2.35484592059769,1.2591072030832,2.19629623788844,1.88499843753098,0.606547444719948,3.17020642346017,0,0.48763373908959,2.68084838594413,1.05650146756755,1.63799893689583,0.707027159768564,0,0,0,4.38450885253763,0.578775534266688,0.655894752046633,2.43492452355245,2.78841148289775,2.81695602532241,0.286822704408103,1.17898849215745,4.280052617775,0,0,0,0,0,0,0,0,1.60044461320525,1.29151611801369,0,1.33029046061003,0.689170200620878,0,0,0,0,0,0,0,0,0,0,0.490080431962063,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.307240764308458,0,0.166849141711909,0,0,0,0,0,0,0,1.02555725490326,0,0,0,0.23874448473769,0.593929361665277,0,0,0.140669416410513,0.111308705022906,0,0,3.38721580026819,0.276283915531148,0,0.102268682502155,0,7.46495010388338,0,0.179021174675609,0,1.479651084554,0,0,0.969332746095218,0,0,0,0,7.97499532978273,0.22758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| ||
|short_description=p3@COL4A1 | |short_description=p3@COL4A1 | ||
}} | }} |
Latest revision as of 12:15, 16 September 2015
Short description: | p3@COL4A1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_COL4A1_5end |
Coexpression cluster: | C566_Pericytes_Renal_hepatic_Fibroblast_Endothelial_Hepatic_Lens |
Association with transcript: | 305bp_to_M10941_5end |
EntrezGene: | COL4A1 |
HGNC: | 2202 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesodermal cell | 4.37e-13 | 121 |
lining cell | 4.07e-09 | 58 |
barrier cell | 4.07e-09 | 58 |
endothelial cell | 1.32e-08 | 36 |
epithelial cell of nephron | 4.04e-08 | 15 |
meso-epithelial cell | 1.21e-07 | 45 |
lymphangioblast | 2.31e-07 | 6 |
endothelial cell of lymphatic vessel | 2.31e-07 | 6 |
vascular lymphangioblast | 2.31e-07 | 6 |
endothelial cell of vascular tree | 7.83e-07 | 24 |
Ontology term | p-value | n |
---|---|---|
vasculature | 3.17e-14 | 78 |
vascular system | 3.17e-14 | 78 |
cardiovascular system | 3.18e-14 | 109 |
circulatory system | 5.10e-14 | 112 |
epithelial tube | 5.31e-13 | 117 |
splanchnic layer of lateral plate mesoderm | 1.90e-11 | 83 |
vessel | 7.50e-11 | 68 |
nephron epithelium | 4.04e-08 | 15 |
renal tubule | 4.04e-08 | 15 |
nephron tubule | 4.04e-08 | 15 |
nephron | 4.04e-08 | 15 |
uriniferous tubule | 4.04e-08 | 15 |
nephrogenic mesenchyme | 4.04e-08 | 15 |
epithelial tube open at both ends | 1.46e-07 | 59 |
blood vessel | 1.46e-07 | 59 |
blood vasculature | 1.46e-07 | 59 |
vascular cord | 1.46e-07 | 59 |
excretory tube | 2.25e-07 | 16 |
kidney epithelium | 2.25e-07 | 16 |
trunk | 2.97e-07 | 199 |
omentum | 4.33e-07 | 6 |
peritoneum | 4.33e-07 | 6 |
abdominal cavity | 4.33e-07 | 6 |
visceral peritoneum | 4.33e-07 | 6 |
mesenchyme | 6.52e-07 | 160 |
entire embryonic mesenchyme | 6.52e-07 | 160 |
artery | 6.95e-07 | 42 |
arterial blood vessel | 6.95e-07 | 42 |
arterial system | 6.95e-07 | 42 |
parenchyma | 9.37e-07 | 15 |