FFCP PHASE1:Hg19::chr7:134464465..134464476,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr7:134464465..134464476,+
|short_description=p7@CALD1
|description=CAGE_peak_7_at_CALD1_5end
|association_with_transcript=0bp_to_ENST00000498254_5end
|Entrez...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=800 | |EntrezGene=800 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1441 | |HGNC=1441 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000498254_5end | |||
|cluster_id=chr7:134464465..134464476,+ | |||
|coexpression_cluster_id=C1986 | |||
|description=CAGE_peak_7_at_CALD1_5end | |||
|id=chr7:134464465..134464476,+ | |||
|ontology_enrichment_celltype=CL:0000055!1.15e-29!180;CL:0000057!3.70e-14!75;CL:0000393!2.34e-10!60;CL:0000211!2.34e-10!60;CL:0000359!6.01e-10!32;CL:0000680!6.48e-10!57;CL:0000056!6.48e-10!57;CL:0000355!6.48e-10!57;CL:0000187!1.37e-09!54;CL:0000192!3.32e-09!42;CL:0000514!3.32e-09!42;CL:0000183!3.01e-08!59;CL:0000222!8.89e-08!119;CL:0002321!1.83e-07!248;CL:0000220!2.44e-07!246;CL:0002334!8.14e-07!12;CL:0002620!8.35e-07!23 | |||
|ontology_enrichment_celltype_v019=CL:0000359;5.57e-10;32!CL:0002334;2.02e-07;12!CL:0000192;6.25e-07;43 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,1.73e-14,76;CL:0000359,2.06e-10,32;CL:0000393,7.94e-10,61;CL:0000211,7.94e-10,61;CL:0000192,1.88e-09,43;CL:0000514,1.88e-09,43;CL:0000680,2.43e-09,58;CL:0000056,2.43e-09,58;CL:0000355,2.43e-09,58;CL:0000187,5.67e-09,55;CL:0002334,2.07e-07,12;CL:0002321,6.11e-07,250;CL:0000222,8.20e-07,121 | |||
|ontology_enrichment_development_v019=CL:0000514;6.25e-07;43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000468!3.34e-14!659;UBERON:0000914!1.06e-12!83;UBERON:0002329!1.06e-12!83;UBERON:0003077!1.06e-12!83;UBERON:0003059!1.06e-12!83;UBERON:0007282!1.06e-12!83;UBERON:0009618!1.06e-12!83;UBERON:0007285!1.06e-12!83;UBERON:0004872!1.12e-12!84;UBERON:0000475!2.13e-12!365;UBERON:0002385!2.14e-11!63;UBERON:0001015!2.14e-11!63;UBERON:0000383!2.14e-11!63;UBERON:0002049!2.76e-11!79;UBERON:0007798!2.76e-11!79;UBERON:0000467!1.06e-10!625;UBERON:0001134!1.27e-10!61;UBERON:0002036!1.27e-10!61;UBERON:0003082!1.27e-10!61;UBERON:0000480!1.75e-10!626;UBERON:0000486!1.88e-10!82;UBERON:0004290!3.02e-10!70;UBERON:0001637!1.00e-09!42;UBERON:0003509!1.00e-09!42;UBERON:0004572!1.00e-09!42;UBERON:0001981!3.47e-09!60;UBERON:0007500!3.47e-09!60;UBERON:0004537!3.47e-09!60;UBERON:0006965!3.47e-09!60;UBERON:0003102!3.55e-09!95;UBERON:0000481!6.99e-09!347;UBERON:0005256!7.10e-09!143;UBERON:0004535!8.73e-09!110;UBERON:0001009!9.78e-09!113;UBERON:0000055!1.15e-08!69;UBERON:0000477!1.63e-08!286;UBERON:0004573!2.72e-08!33;UBERON:0004571!2.72e-08!33;UBERON:0002199!1.59e-07!45;UBERON:0002416!1.59e-07!45;UBERON:0000119!1.80e-07!312;UBERON:0000483!2.48e-07!309;UBERON:0000490!5.47e-07!138;UBERON:0002097!7.69e-07!40 | |||
|ontology_enrichment_uberon_v019=UBERON:0004573;1.41e-07;33!UBERON:0004571;1.41e-07;33!UBERON:0001637;1.58e-07;42!UBERON:0003509;1.58e-07;42!UBERON:0004572;1.58e-07;42!UBERON:0001135;3.85e-07;15!UBERON:0002385;7.93e-07;31!UBERON:0001015;7.93e-07;31!UBERON:0000383;7.93e-07;31 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004872,3.94e-12,83;UBERON:0002385,6.33e-11,64;UBERON:0001015,6.33e-11,64;UBERON:0000383,6.33e-11,64;UBERON:0002049,1.69e-10,78;UBERON:0007798,1.69e-10,78;UBERON:0001134,4.14e-10,62;UBERON:0002036,4.14e-10,62;UBERON:0003082,4.14e-10,62;UBERON:0001637,5.58e-10,42;UBERON:0003509,5.58e-10,42;UBERON:0004572,5.58e-10,42;UBERON:0002329,1.07e-08,71;UBERON:0003059,1.07e-08,71;UBERON:0007282,1.07e-08,71;UBERON:0004290,1.07e-08,71;UBERON:0009618,1.07e-08,71;UBERON:0007524,1.12e-08,73;UBERON:0007500,1.22e-08,59;UBERON:0001981,1.22e-08,59;UBERON:0004537,1.22e-08,59;UBERON:0006965,1.22e-08,59;UBERON:0000486,1.28e-08,83;UBERON:0003102,1.51e-08,99;UBERON:0004535,1.73e-08,109;UBERON:0004573,2.24e-08,33;UBERON:0004571,2.24e-08,33;UBERON:0003077,2.46e-08,72;UBERON:0007285,2.46e-08,72;UBERON:0001009,2.85e-08,112;UBERON:0000055,4.25e-08,68;UBERON:0005256,3.11e-07,122;UBERON:0001135,3.44e-07,15;UBERON:0007503,8.83e-07,78 | |||
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|phase1_expression=50.1432326786736,26.9766660102639,77.8068310609761,56.041047077753,55.4231757089837,47.1062803014199,35.4619829435635,2.52687949370732,0.261185628199839,0.737201809504527,0,0.655324116390517,0.791300934685361,1.48519623552056,0.994192127183747,29.5823064438781,30.7374209292228,27.0214733443328,23.9087071407348,3.0780264519197,1.83600622119828,2.5076377718247,14.884271330815,9.03371205481036,16.8227137057036,0,0,0,0,0,0,0,1.50602959389125,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.87613732627923,0.670700859703636,12.6583936225095,8.67453965722959,8.52274448081012,6.51809335323707,9.54343136461319,6.8128881842369,10.2097602537193,3.54767035940102,6.58760892698445,2.5540919722054,0,0,0,0,0,0,0,0,2.38514888840046,0.860234595106124,2.42998351125316,0,3.35599548967925,1.10047216776027,2.50793959844173,2.84258435086262,2.13459757612026,10.0416183829401,2.81980521976403,0.760272105718513,0.732186172644509,2.57364156242108,6.48113558305408,3.75058858793135,1.57170560838319,1.35133776579987,0,0,0.549605231791222,0,0,0.436094052142534,135.673342812822,19.1212072613515,84.74187572046,21.512746556161,5.32002573297536,15.6989728039846,5.33744978648525,35.0267918752367,16.4941848761876,4.31074150623002,4.41347138406339,6.20565453344219,8.64263886719998,0,0.624320153660641,0,0.597794722207204,0.822041490506354,0.809364721840658,0.561803226808994,1.63323337003915,0.368502951935304,0.206651562351531,20.1960485737949,20.0286212715631,0.910161361938026,1.43723628363248,1.17835279767846,1.25118519871964,4.15596173226274,44.7757173298455,56.0872666312206,37.4092766677426,5.67160915800105,75.1642573536332,33.7420674333337,32.0017170750938,19.2058301494017,27.8241828943785,133.457799743636,58.4406928881192,24.8101208394661,38.3901800335123,34.8358608456878,21.3555764850134,18.7509425909822,99.402685904652,57.3279438915273,23.3993617388473,4.25173876959253,9.00062197949754,7.7437240755031,2.43947412259191,1.98794652482228,1.39432731443422,3.10983165046111,1.00928340350251,0,29.725411142665,71.3997441394103,2.76269842704961,14.3954057689914,2.88751792667834,1.41968160047813,0.842923450390509,0,1.21323370005633,0.435758888184812,0.949082476444386,0.539325232640658,0.392442930250692,0.769494313892781,0,0,2.8810180793198,1.47008711385542,0,0,11.8157981336281,0,0.245976877086227,3.25978839567199,6.03626569747441,1.1240175325762,2.11110842064425,2.87024179991442,0,0,2.88662684050547,3.24605133930215,21.8380171278628,2.59859605969933,0,2.85381228351897,0,0,0,0,0,3.74935335947108,43.3393890753058,14.4610599187234,1.79117045405697,0.581267877027924,1.15014803749563,0,0,0.207328115540772,0.288239906833923,0.12624243342638,0.761974731506028,0.381988425558278,1.17217447210047,0,1.13110241973656,0,0.571652865261156,1.90622843387113,0.87192013766656,3.2268845761218,50.6745125770489,0,0.845302752556,206.36797846986,114.408180602503,0,0,0.266422179016099,14.8697113404473,3.25572963234866,3.29296134712308,0.977208552881205,20.9681249758102,3.95975936466715,13.5647719676814,27.8890706752094,18.5949763598626,0,0,0,20.1284878612929,18.3779097334582,12.8373214536647,7.38384664004654,1.64381058040307,3.04403637507822,0,0,0,0,3.30323011489202,0,4.63973287666617,1.34013012267479,2.55175500661265,0,0,0,2.69921281782108,1.00034104211935,1.89885516589815,92.5470333812092,68.338302709313,60.7154297880649,58.804990326342,16.2510893852968,4.5481500811197,4.1389228517002,34.5397311238427,8.11224341583494,6.34250385617005,1.17480694477644,0.343143423810856,0,0,0.106727557803444,0.303127571446259,3.32870879020994,2.11673205330776,60.042089492144,159.753914192873,33.1178911431027,93.5415789566617,100.806328066141,72.3842645146234,22.2627099667486,4.93471020168498,10.4761417934745,9.28036862956043,3.11552657510173,8.36714724911707,0.483437798366489,6.01519410909855,0.644566922551274,3.4444334449382,2.36718518408732,7.34296723772775,0,0.385076685522074,0,1.46139224653261,0.844413031143006,0,0.340187410553031,1.94324324491925,0,0.270946437543853,0,0,0,0.223874754722178,0,0,0.512900250232778,1.64007322849853,1.30151357865721,6.28550171051106,1.73981983154852,2.47528499761764,4.59412430396938,3.25030123018261,20.8889108797407,4.25351160485337,0.308097234229289,0.614014698904518,1.7918754422989,4.72649077420404,0.580066775656914,1.27839941124151,9.17029967161395,2.31398881505369,3.65161127993702,9.18811529961006,1.71968227454435,11.1562931831349,39.9811680474913,4.8792608911242,2.7723022215848,8.51689648507235,6.08953094452551,10.0075078316117,15.1712379946511,7.81532575655301,27.2086305258104,20.0161703620016,0.255897791311334,1.71175595213568,0.95460974377781,3.92474320099615,12.7709444884153,6.03981465419321,4.71249609382746,7.48075181821269,1.58510321173008,7.16139375606268,0.48763373908959,8.52997213709495,6.33900880540533,30.0299805097569,10.0397856687136,2.26016233240486,1.102730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| ||
|short_description=p7@CALD1 | |||
}} | }} |
Latest revision as of 11:41, 16 September 2015
Short description: | p7@CALD1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_7_at_CALD1_5end |
Coexpression cluster: | C1986_Preadipocyte_Mesenchymal_basal_Fibroblast_Ewing_hepatic_Adipocyte |
Association with transcript: | 0bp_to_ENST00000498254_5end |
EntrezGene: | CALD1 |
HGNC: | 1441 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 1.73e-14 | 76 |
vascular associated smooth muscle cell | 2.06e-10 | 32 |
electrically responsive cell | 7.94e-10 | 61 |
electrically active cell | 7.94e-10 | 61 |
smooth muscle cell | 1.88e-09 | 43 |
smooth muscle myoblast | 1.88e-09 | 43 |
muscle precursor cell | 2.43e-09 | 58 |
myoblast | 2.43e-09 | 58 |
multi-potent skeletal muscle stem cell | 2.43e-09 | 58 |
muscle cell | 5.67e-09 | 55 |
preadipocyte | 2.07e-07 | 12 |
embryonic cell | 6.11e-07 | 250 |
mesodermal cell | 8.20e-07 | 121 |
Ontology term | p-value | n |
---|---|---|
splanchnic layer of lateral plate mesoderm | 3.94e-12 | 83 |
muscle tissue | 6.33e-11 | 64 |
musculature | 6.33e-11 | 64 |
musculature of body | 6.33e-11 | 64 |
vasculature | 1.69e-10 | 78 |
vascular system | 1.69e-10 | 78 |
skeletal muscle tissue | 4.14e-10 | 62 |
striated muscle tissue | 4.14e-10 | 62 |
myotome | 4.14e-10 | 62 |
artery | 5.58e-10 | 42 |
arterial blood vessel | 5.58e-10 | 42 |
arterial system | 5.58e-10 | 42 |
somite | 1.07e-08 | 71 |
presomitic mesoderm | 1.07e-08 | 71 |
presumptive segmental plate | 1.07e-08 | 71 |
dermomyotome | 1.07e-08 | 71 |
trunk paraxial mesoderm | 1.07e-08 | 71 |
dense mesenchyme tissue | 1.12e-08 | 73 |
epithelial tube open at both ends | 1.22e-08 | 59 |
blood vessel | 1.22e-08 | 59 |
blood vasculature | 1.22e-08 | 59 |
vascular cord | 1.22e-08 | 59 |
multilaminar epithelium | 1.28e-08 | 83 |
surface structure | 1.51e-08 | 99 |
cardiovascular system | 1.73e-08 | 109 |
systemic artery | 2.24e-08 | 33 |
systemic arterial system | 2.24e-08 | 33 |
paraxial mesoderm | 2.46e-08 | 72 |
presumptive paraxial mesoderm | 2.46e-08 | 72 |
circulatory system | 2.85e-08 | 112 |
vessel | 4.25e-08 | 68 |
trunk mesenchyme | 3.11e-07 | 122 |
smooth muscle tissue | 3.44e-07 | 15 |
epithelial vesicle | 8.83e-07 | 78 |