FFCP PHASE1:Hg19::chr13:107210627..107210673,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(2 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=55082 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=25482 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=-246bp_to_BC030508_5end | |||
|cluster_id=chr13:107210627..107210673,- | |||
|description=CAGE_peak_6_at_ARGLU1_5end | |||
|id=chr13:107210627..107210673,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:162!1.70e-09!235;DOID:14566!7.87e-09!239;DOID:0050687!8.09e-07!143 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!6.90e-11!57;UBERON:0005068!6.90e-11!57;UBERON:0006241!6.90e-11!57;UBERON:0007135!6.90e-11!57;UBERON:0001017!1.47e-10!82;UBERON:0003080!2.24e-10!42;UBERON:0002780!2.55e-10!41;UBERON:0001890!2.55e-10!41;UBERON:0006240!2.55e-10!41;UBERON:0007023!4.16e-10!115;UBERON:0000073!6.70e-10!94;UBERON:0001016!6.70e-10!94;UBERON:0000955!1.09e-09!69;UBERON:0006238!1.09e-09!69;UBERON:0005743!1.94e-09!86;UBERON:0002346!7.20e-09!90;UBERON:0002020!7.23e-09!34;UBERON:0003528!7.23e-09!34;UBERON:0002616!1.14e-08!59;UBERON:0003075!3.53e-08!86;UBERON:0007284!3.53e-08!86;UBERON:0002791!4.83e-08!33;UBERON:0001893!7.59e-08!34;UBERON:0001869!1.49e-07!32;UBERON:0003056!2.57e-07!61 | |||
|ontology_enrichment_uberon_v019=UBERON:0003528;3.82e-08;34!UBERON:0002020;3.82e-08;34!UBERON:0002791;2.11e-07;32!UBERON:0002780;2.52e-07;41!UBERON:0001890;2.52e-07;41!UBERON:0001869;9.62e-07;32 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001049,1.42e-13,56;UBERON:0005068,1.42e-13,56;UBERON:0006241,1.42e-13,56;UBERON:0007135,1.42e-13,56;UBERON:0002346,1.56e-13,86;UBERON:0001017,1.76e-13,81;UBERON:0001016,4.55e-13,89;UBERON:0003075,5.82e-12,82;UBERON:0007284,5.82e-12,82;UBERON:0000073,1.10e-11,53;UBERON:0002616,1.10e-11,53;UBERON:0000955,1.27e-11,68;UBERON:0006238,1.27e-11,68;UBERON:0002780,1.07e-10,41;UBERON:0001890,1.07e-10,41;UBERON:0003080,1.07e-10,41;UBERON:0006240,1.07e-10,41;UBERON:0003528,3.10e-10,34;UBERON:0002020,3.10e-10,34;UBERON:0002791,4.41e-09,32;UBERON:0003056,1.05e-08,61;UBERON:0007023,1.25e-08,114;UBERON:0001893,3.36e-08,34;UBERON:0001869,4.49e-08,32;UBERON:0010371,6.65e-08,104;UBERON:0002420,3.50e-07,9;UBERON:0007245,3.50e-07,9;UBERON:0010009,3.50e-07,9;UBERON:0010011,3.50e-07,9;UBERON:0000454,3.50e-07,9;UBERON:0002619,4.79e-07,22;UBERON:0011216,6.58e-07,223;UBERON:0000125,7.65e-07,9;UBERON:0002308,7.65e-07,9 | |||
|phase1_expression=0,0.856402095563933,0.281908808191942,0,0.446961094427288,0,0,0,0,0,0,0,0,0,0,0.672325146451775,0,0,0.975865597581014,0.123121058076788,0,0,0.572471974262113,0.136874425072884,0.753255837568817,0.916960868975415,0.328402357799783,0.629686250509434,0,1.53531759238885,0.309632246632152,0,0,0,1.23947520928483,1.84820002233648,0.293600439334847,1.66198622559563,0.401088894940283,1.73608696572681,1.56740831967947,0.647787332037959,0.257575567634187,0.290796477559129,0,1.4555043671269,1.16214518452842,1.23350366406548,0.929119112685311,1.1507695692886,0.512321413058201,0.236482229888585,0.344745680736619,0.645484683583826,0,0.941211697713023,0,0.224723484445085,0,0.641858054152187,0.639337125799041,0.659702600373432,0.797854630486527,1.27867425159808,0,1.70215567407342,1.86846674698672,1.00499466102697,0,0.434377689410233,0,0.736555271975129,1.26584954976354,0.211255286311942,0.850417199860174,0.419317291016752,0.561643155732475,0.600707571366025,0.48217676009124,0.855038231223746,0,0.182664153764634,0,0.546138611262131,0,0.853460445133014,0.800791974072025,0.574752439954483,0,3.81621501814146,2.27685187643779,1.76171156811282,1.91136614062614,0,1.12101712596307,0.526768169550154,1.96709770113833,3.53709686474248,1.23360899399706,0.83593247695339,0.651844533267181,1.89379122293893,0,0.445641827540694,0.294605907474837,1.10766947291811,0.541607727530031,1.0247305578054,0.520237390239513,0.822189523018381,0.276350017785848,0.289803085735052,0.444859689486181,0.267540828089713,1.04535523804977,0.339928028092699,0,1.37450978193052,1.26509846009751,0.95569624297229,0,0,0.301150238155546,0.127986611154418,0,1.4206635122641,0,2.01606743224732,0.802320587350522,2.31719046212478,0,0,0,0.361439152384566,0,0.434539556882471,0,0.973269740605272,0.189069634328136,1.77383517970051,0.966182642624386,0.261958150995425,0.364295288292542,0.370784442784429,0.97364218096405,0.348259474598534,0.132957960518865,0.715471872916026,1.14398982156026,0,0.198762407366705,0,0.694281003215189,0,1.25849830862972,0.550236083880135,0,0.516833518338658,0.35576626268671,0.66944122552934,0.402829317109147,0,0,0.367663080345869,0,0.17859945656816,1.34717623575702,0.563057402416611,0,0.949265659568129,0.366403487860815,0,0,0.436094052142534,0.993943903390637,0.379891534993739,1.19168262731897,0.286836620748814,0,0,0,0.98667019366864,0.622422070799533,0.404132016209064,0,0.151357427644931,0,0,0,0,0.448346041655403,0.117434498643765,0.161872944368132,0.140450806702248,0.61246251376468,0.245668634623536,0.206651562351531,0,0.989067717114227,0,0,0.673344455816265,0.125118519871964,0.277064115484183,0,0.30648779579902,0.901428353439581,0,0.358779271377724,1.06778694409284,0.211931901159562,0,0.103052529238439,0.515281080091258,0.18611685633159,0.675105328965065,0.0974370051611986,0.252433774244115,0.552299391853796,0.161646056818812,0.710019185033229,0.10075209822764,0.169560592310488,0.193260853163297,0.545492241181669,0.286804595389004,1.09776335516636,1.19276791489337,0.348581828608555,0.932949495138334,0.504641701751257,0.36497735907583,0,0,0,0.464367928031979,0,0.591534000199219,0.337169380156203,0.241011029883482,0.220587945464788,0,0,0,0.196221465125346,0.38474715694639,0,0,0,0,0,0,1.77236972004421,1.7658523976586,1.22988438543114,0,0,0,0,0.462942225792648,0,1.03993478527958,2.88662684050547,0.231860809950154,0.117408694235822,0.144366447761074,0.925971025153221,0,0,0,0.246217006087397,0,0,0,0,0.141775097242386,0.0895585227028483,0.290633938513962,0,0,0.352193736052904,0.414656231081544,0.864719720501769,0,0.253991577168676,0,0,0,0.411309970813294,0.300343057843917,0,0.112131084345361,0,0,0.646358578788889,0,0,0.26593811658487,0,0.257207374262142,0,0,0.142977993658148,0,0,0.325736184293735,0,0,0.301439377059586,0,0.499864955910285,0,0.502257091432126,6.32501818449095,0,0,0,0.579125226670317,1.02738161275192,0.179060963239896,1.79336230389644,1.77327684181734,2.58753089831421,2.69520376187472,0,0,1.54657762555539,0.335032530668698,1.27587750330633,1.49801404789436,2.99161459204025,0.828831026872071,0.12269149171914,0,0,1.03985430765404,0,0.473107245101804,0.234282829985426,0,0,1.03473071292505,0,0,0.60818530127658,0,0,2.06768026122887,0.431428401637234,1.06727557803444,0,0,0,0.248107807818777,0.61384789315225,0.280660094433074,0.512556597022804,0.511707249066704,0.321707842287215,0,0.462629081407967,0.177561725313127,0.246381468041427,0,0.116210378459959,0.604297247958111,0.601519410909855,1.01289087829486,0.229628896329213,0.182091168006717,0.524497659837696,0,0.15403067420883,0,0,0.316654886678627,0,0.170093705276516,0.431831832204279,1.54227252690289,0,0,0,0,0.223874754722178,0,0,0,0.656029291399411,0,1.03041011647722,0.457847324091717,0.660075999364704,0,0,0,0.386682873168488,0.308097234229289,0.614014698904518,0,0.644521469209642,0.435050081742686,0.0852266274161009,0.178064071293475,0.991709492165869,0.960950336825531,1.53135254993501,0.708104465988849,0,0.31481234683064,0,0,0,0,0,0.143124886741991,1.48863347743867,0.316379424718726,0.38126038784765,0,0,0,0,0.539617372749944,0,0.353437207037059,0,0,0,0,0.243713489631284,0,0.136499911407986,0.424216295861138,0,0,0.66343897524122,0,0,0,0.202910376962704,0.30982349809975,0,0.143411352204052,0.0982490410131212,0,0,0.422215270595328,0.329294892959902,0.379473173765715,0,0.192444225451024,0,0,0.847294206991012,0,0,0,0.689170200620878,0.507447609232169,0,1.70894156152249,0.714695326373367,1.23408681925858,0.648473311192717,0.540031437238115,1.58625035258854,0.427296284509893,0.962479855263359,0.490080431962063,2.22963810150862,0.721346064882224,1.06712765022621,1.27541018183058,0.399158742865633,0.766021480529467,0.846694330895531,0.324621940274555,2.52717460302113,2.05411211129873,0.783399478865116,0,0.169291777801603,0.802940375518498,0.403599414382095,1.27753871307098,1.71752672377882,0,0.671028323677248,0.166849141711909,0.19538809540204,0.835218521685727,0,0.270455678475983,0.33307196799782,5.63948020351398,0.37428108081644,0.146508179271894,0.485442086998054,1.5602073798847,0.568272293612826,0.23874448473769,0.296964680832639,0,1.9882952955326,1.96937182974718,0.111308705022906,0.16480387422676,3.3780065300479,1.59398390600856,1.38141957765574,1.76352923497993,1.02268682502155,0.738508832766417,0.622079175323615,0.269605053441981,0.358042349351218,0.511572370226872,0.0986434056369336,2.3948309234694,0,1.93866549219044,0.371072392647405,0,2.08342208868187,0.349839999984783,0.724999575434793,0.568967241427498,1.5255219017566,2.6002644994473,3.79217710565611,0.291604613383254,2.60437492399938,2.65722415744152,1.92954301800653,0,1.99042667876204,1.77328571372128,2.19385397153973,0.762569244632931,0.975966209950223,0.923403102045565,2.62066728448103,1.38338342632836,0.0897576444097721,1.19512109114209,0,0.183195186803725,1.5991043280559,0,1.09886179476517,0.997270091400938,0.451191321234361,0.19606253431774,0,1.51802986179348,0.635746315921515,0.632994193584081,0.489698424477443,0.141353071433941,0.432777279484182,0.995261931078505,1.06149077404007,4.888241159469,1.48260564340311,1.23563938946503,1.77517314159274,0.539209063845416,2.40773294189637,1.63985112007737,0.547364367646998,0.978323094660449,0.485560759068186,0.789168805698781,2.41981432097328,0.30607276163049,0.126373159256976,0.150323419414493,0.103688191397247,0,2.31694369112849,1.56966459203613,0,0.569219092059585,0.693373365065693,0.520679215005393,1.37189356380129,0.174118413160805,1.22308667769421,0.51595809741485,0.580537987734511,0.219267951258557,0.574808199372465,0.387956065953678,0.441280633457501,0.451961481561065,0.411125773940253,0.397429223405979,0.379864775735272,3.51992488922645,0.801588202515337,0.85381197895741,1.39866726707491,2.4495370916198,0.458146384663663,0.686379991447858,1.00838358591705,0.372757606696298,2.59263438078475,2.31037150325144,0.627617077873999,1.22397861163586,0.577901179803038,4.80336230967832,1.36905378891993,0,1.28929632425987,0.262887354279314,0.837847203816763,1.14580212005842,2.87149209830726,0.798716001995964,0.429226048136571,0.223171457441873,0.671834724867263,2.16179930125442,0,0.551482276150566,0.412079291905832,0.202210631562555,0.196854963029498,1.1007533168552,6.36183751847443,2.31545790389679,0.321506296930038,0.825236619583403,2.07720169014593,0,0,0.546746009922222,2.34804281319486,0.315222829196793,0.419636705079985,0.739202355635845,0.896436696664224,0.191915197319445,1.42939065274673,1.32418394073086,1.017074150619,0.542999601753713,0,0,1.19730191562487,0.985110248992068,1.5334921960688,0.453248366080503,0,0,1.42211251997706,1.71902382265497,0.342173675768659,1.40963004463334,0.854299300541557,0.628817220398664,2.07119527673598,0.992332043623902,1.38328142328561,0.487170393523584,3.83004754662109,0.544017803369474,0.7520696820681,0.306345576763462,1.31149052283922,0.628216385000937,0.886068179966986,4.14889300666675,1.3771002377715,2.86704597845036,1.22021956690538,0.372578417648301,1.10678907948985,0.499921631848426,0.151649117541648,0,0.470531639396343,1.87333962322753,1.01444720027578,0.149254802886874,0,0,0,0,0,0,0,0,0.443565449968902,0.159296767163702,0,0.155262956876259,0.414706207840855,0,0,0.300515217994437,0.380805212168795,0.406870733204662,0.727394636810238,0.322231671127465,0,0.796191777397232,0.400027764663154,0.343395705182793,0.336749488765919,0,1.15571898244382,0.214441591374926,0,0.680117776536817,0.463044948647668,0.97894681802587,0.358177682162975,0,0.438568099157414,0.353378291891762,0.578742114812744,0.168942440653073,0.76872455576384,0.345430341731199,0,2.62691028688288,0.389720617678777,0.531459361253452,0.490696182767533,1.31043939538565,0.245772908753719,1.26787274015176,0.59996218756479,0.533458648470704,1.03328987796489,0.567515953566836,0.184105950251841,0,0,1.27894371303652,0.323474434190045,1.25812753484717,0.982886743728125,2.54598794931038,4.25149840203366,1.85903646388503,0.558644917973244,0.318004350653419,1.81382013502883,0,1.05802783107205,1.2249819094128,0.321146125482298,1.41696576325585,2.23487402680012,0.82046545696302,3.27693205088234,0.0691572524642179,1.13032951942296,2.85538840518309,0.687034029507179,0.589848616738702,0.917142992608395,0.924205329202706,0.762764190934334,0.690359926060101,0.397832444232549,0,1.61364054962816,0,0.523813388962845,0.327543835020193,0.887136517302272,0.405225507710368,3.12431239445539,1.44680757550829,0.443910671357348,3.28184885410932,0,0.992422356778588,0,1.53314913167514,2.14280734351315,0.672567444437648,2.42786241694653,0.91064876540519,1.06442844195167,1.03710588800201,1.71488009437418,0.271878931907327,0.394636641377094,0.472775363535873,0.556157009460346,0.313972371402056,1.72827148907602,4.20408244970683,4.56579360254748,0.863710364874486,0,0.285906176706625,1.10609528212909,1.04617282831313,2.26015753993353,1.60342272946051,1.65772931330429,0.6828739083758,2.76503864725637,0.430227358820278,0.118332000730565,0.511280428554946,1.69354820076372,1.3746412112643,0,0.955538938977433,0.111855431797792,0.883352102537187,0.731507549893617,1.29485767437579,0.102662806856247,0,0.485710993059139,2.10545517115895,1.59160620129095,0.356760272332706,0.45178432815584,1.31928620094515,0.754814217833368,1.00326405540328,0.437119121007915,0,0.490296643507811,0.707029641304878,2.1593931382644,1.78227840196252,1.6906229103336,0.339854229375634,0.469919589899268,0.193373663920732,0.89947040332436,2.67830907908486,0.352894871715692,0.641930933513346,3.65168194123259,0.917458566809082,1.57673541466596,0.788857810965923,0.339957450954573,2.18175345170189,1.0580536810308,0,1.84870251452567,1.29787968637137,1.89249637252618,0.546327859818478,0.380095503034311,1.22386595690378,0.801652215796681,0.735159196278759,1.0028301571695,0.303114792872958,0.803892390468535,2.48750831837634,2.1720929130998,0,1.42838658878244,0.0645889098360061,0.434523000071005,0.672791175483681,0.12729431655633,1.61693751166575,0,1.02669990325584,0.5388164241167,0.0717222053926763,1.66330178273007,1.54666210360852,0.747091421144008,0,1.07790242527904,0,0.488965776731466,2.03448089157869,0.665756774185513,0.402547587182052,1.28227396921293 | |||
|short_description=p6@ARGLU1 | |||
}} |
Latest revision as of 10:29, 16 September 2015
Short description: | p6@ARGLU1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_ARGLU1_5end |
Coexpression cluster: | NA |
Association with transcript: | -246bp_to_BC030508_5end |
EntrezGene: | ARGLU1 |
HGNC: | 25482 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neural tube | 1.42e-13 | 56 |
neural rod | 1.42e-13 | 56 |
future spinal cord | 1.42e-13 | 56 |
neural keel | 1.42e-13 | 56 |
neurectoderm | 1.56e-13 | 86 |
central nervous system | 1.76e-13 | 81 |
nervous system | 4.55e-13 | 89 |
neural plate | 5.82e-12 | 82 |
presumptive neural plate | 5.82e-12 | 82 |
regional part of nervous system | 1.10e-11 | 53 |
regional part of brain | 1.10e-11 | 53 |
brain | 1.27e-11 | 68 |
future brain | 1.27e-11 | 68 |
regional part of forebrain | 1.07e-10 | 41 |
forebrain | 1.07e-10 | 41 |
anterior neural tube | 1.07e-10 | 41 |
future forebrain | 1.07e-10 | 41 |
brain grey matter | 3.10e-10 | 34 |
gray matter | 3.10e-10 | 34 |
regional part of telencephalon | 4.41e-09 | 32 |
pre-chordal neural plate | 1.05e-08 | 61 |
adult organism | 1.25e-08 | 114 |
telencephalon | 3.36e-08 | 34 |
cerebral hemisphere | 4.49e-08 | 32 |
ecto-epithelium | 6.65e-08 | 104 |
basal ganglion | 3.50e-07 | 9 |
nuclear complex of neuraxis | 3.50e-07 | 9 |
aggregate regional part of brain | 3.50e-07 | 9 |
collection of basal ganglia | 3.50e-07 | 9 |
cerebral subcortex | 3.50e-07 | 9 |
regional part of cerebral cortex | 4.79e-07 | 22 |
organ system subdivision | 6.58e-07 | 223 |
neural nucleus | 7.65e-07 | 9 |
nucleus of brain | 7.65e-07 | 9 |