FFCP PHASE1:Hg19::chr1:117307142..117307156,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr1:117307142..117307156,+
|short_description=p3@CD2
|description=CAGE_peak_3_at_CD2_5end
|association_with_transcript=-340bp_to_AK127925_5end
|EntrezGene=914...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=914 | |EntrezGene=914 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=1639 | |HGNC=1639 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-340bp_to_AK127925_5end | |||
|cluster_id=chr1:117307142..117307156,+ | |||
|coexpression_cluster_id=C726 | |||
|description=CAGE_peak_3_at_CD2_5end | |||
|id=chr1:117307142..117307156,+ | |||
|ontology_enrichment_celltype=CL:0000791!1.02e-32!18;CL:0000789!1.02e-32!18;CL:0002420!1.02e-32!18;CL:0002419!1.02e-32!18;CL:0000790!1.02e-32!18;CL:0000084!1.82e-32!25;CL:0000827!1.82e-32!25;CL:0000625!1.12e-21!11;CL:0000838!9.89e-20!52;CL:0000542!3.10e-19!53;CL:0000051!3.10e-19!53;CL:0002087!2.56e-12!119;CL:0000738!7.76e-12!140;CL:0000624!1.16e-10!6;CL:0002031!1.25e-09!124;CL:0000037!9.78e-09!172;CL:0000566!9.78e-09!172;CL:0000623!2.72e-08!3;CL:0000825!2.72e-08!3;CL:0000988!8.49e-08!182;CL:0002032!2.95e-07!165;CL:0000837!2.95e-07!165 | |||
|ontology_enrichment_celltype_v019=CL:0000791;5.00e-34;18!CL:0000789;5.00e-34;18!CL:0002419;5.00e-34;18!CL:0000084;4.50e-33;25!CL:0000625;2.56e-25;11!CL:0000624;1.63e-12;6!CL:0000542;5.37e-10;53!CL:0000815;5.57e-10;2!CL:0000792;5.57e-10;2!CL:0002677;5.57e-10;2!CL:0000623;4.74e-07;3!CL:0000898;6.32e-07;3!CL:0000226;9.62e-07;3!CL:0000842;9.62e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,5.66e-34,18;CL:0000789,5.66e-34,18;CL:0002420,5.66e-34,18;CL:0002419,5.66e-34,18;CL:0000790,5.66e-34,18;CL:0000084,5.26e-33,25;CL:0000827,5.26e-33,25;CL:0000625,2.78e-25,11;CL:0000838,5.38e-19,52;CL:0000542,1.44e-18,53;CL:0000051,1.44e-18,53;CL:0000624,1.71e-12,6;CL:0000815,6.70e-10,2;CL:0000792,6.70e-10,2;CL:0002677,6.70e-10,2;CL:0002087,1.15e-08,115;CL:0000738,9.65e-08,136;CL:0000623,4.13e-07,3;CL:0000825,4.13e-07,3;CL:0000898,7.14e-07,3;CL:0000226,8.80e-07,3;CL:0000842,8.80e-07,3 | |||
|ontology_enrichment_development_v019=CL:0000790;5.00e-34;18!CL:0000051;5.37e-10;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000178!3.72e-18!15;UBERON:0000179!3.72e-18!15;UBERON:0000463!3.72e-18!15;UBERON:0004177!3.16e-08!7;UBERON:0007023!1.11e-07!115 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;5.37e-14;15!UBERON:0000179;5.37e-14;15!UBERON:0000463;5.37e-14;15!UBERON:0002370;5.57e-10;2!UBERON:0005058;5.57e-10;2!UBERON:0009113;5.57e-10;2!UBERON:0002390;4.24e-09;32!UBERON:0002193;1.50e-07;42 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,5.90e-14,15;UBERON:0000179,5.90e-14,15;UBERON:0000463,5.90e-14,15 | |||
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| ||
|short_description=p3@CD2 | |||
}} | }} |
Latest revision as of 09:42, 16 September 2015
Short description: | p3@CD2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_CD2_5end |
Coexpression cluster: | C726_chronic_CD4_Hodgkin_CD8_thymus_CD19_blood |
Association with transcript: | -340bp_to_AK127925_5end |
EntrezGene: | CD2 |
HGNC: | 1639 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 5.66e-34 | 18 |
alpha-beta T cell | 5.66e-34 | 18 |
immature T cell | 5.66e-34 | 18 |
mature T cell | 5.66e-34 | 18 |
immature alpha-beta T cell | 5.66e-34 | 18 |
T cell | 5.26e-33 | 25 |
pro-T cell | 5.26e-33 | 25 |
CD8-positive, alpha-beta T cell | 2.78e-25 | 11 |
lymphoid lineage restricted progenitor cell | 5.38e-19 | 52 |
lymphocyte | 1.44e-18 | 53 |
common lymphoid progenitor | 1.44e-18 | 53 |
CD4-positive, alpha-beta T cell | 1.71e-12 | 6 |
regulatory T cell | 6.70e-10 | 2 |
CD4-positive, CD25-positive, alpha-beta regulatory T cell | 6.70e-10 | 2 |
naive regulatory T cell | 6.70e-10 | 2 |
nongranular leukocyte | 1.15e-08 | 115 |
leukocyte | 9.65e-08 | 136 |
natural killer cell | 4.13e-07 | 3 |
pro-NK cell | 4.13e-07 | 3 |
naive T cell | 7.14e-07 | 3 |
single nucleate cell | 8.80e-07 | 3 |
mononuclear cell | 8.80e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
blood | 5.90e-14 | 15 |
haemolymphatic fluid | 5.90e-14 | 15 |
organism substance | 5.90e-14 | 15 |