FFCP PHASE1:Hg19::chr10:112679321..112679346,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr10:112679321..112679346,+ to FFCP PHASE1:Hg19::chr10:112679321..112679346,+: NSchange) |
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(9 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=8036 | |EntrezGene=8036 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=15454 | |HGNC=15454 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-4bp_to_ENST00000480155_5end | |||
|cluster_id=chr10:112679321..112679346,+ | |||
|description=CAGE_peak_2_at_SHOC2_5end | |||
|id=chr10:112679321..112679346,+ | |||
|ontology_enrichment_celltype=CL:0000738!1.98e-20!140;CL:0000766!3.56e-19!76;CL:0002057!7.62e-19!42;CL:0000839!9.64e-17!70;CL:0002031!1.25e-16!124;CL:0000860!2.14e-16!45;CL:0000557!3.58e-16!71;CL:0002087!1.26e-14!119;CL:0002009!1.71e-14!65;CL:0002194!5.12e-14!63;CL:0000576!5.12e-14!63;CL:0000040!5.12e-14!63;CL:0000559!5.12e-14!63;CL:0000037!8.19e-14!172;CL:0000566!8.19e-14!172;CL:0002032!1.37e-13!165;CL:0000837!1.37e-13!165;CL:0000763!2.33e-12!112;CL:0000049!2.33e-12!112;CL:0000988!6.58e-11!182;CL:0000134!1.60e-10!358;CL:0002320!3.07e-10!365;CL:0000219!7.94e-08!390 | |||
|ontology_enrichment_celltype_v019=CL:0000860;1.54e-14;33!CL:0002057;1.54e-14;33!CL:0000473;2.41e-11;39!CL:0000234;2.41e-11;39!CL:0000576;3.12e-11;48!CL:0000766;4.73e-10;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000738,1.39e-21,136;CL:0000766,5.71e-21,72;CL:0000860,6.86e-19,42;CL:0002057,6.86e-19,42;CL:0000839,1.86e-18,66;CL:0000557,8.05e-18,67;CL:0002031,1.06e-17,120;CL:0000473,2.61e-17,48;CL:0000234,2.61e-17,48;CL:0002009,4.14e-16,61;CL:0002194,1.26e-15,59;CL:0000576,1.26e-15,59;CL:0000040,1.26e-15,59;CL:0000559,1.26e-15,59;CL:0002087,1.27e-15,115;CL:0000037,2.03e-14,168;CL:0002032,3.35e-14,161;CL:0000837,3.35e-14,161;CL:0000763,3.83e-13,108;CL:0000049,3.83e-13,108;CL:0000988,7.10e-12,177;CL:0000134,2.08e-11,354;CL:0002320,3.84e-11,361;CL:0000219,1.57e-08,386;CL:0000048,4.98e-07,427;CL:0000723,9.85e-07,433 | |||
|ontology_enrichment_development_v019=CL:0002057;1.17e-13;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!2.22e-19!115;UBERON:0002390!8.79e-18!102;UBERON:0003061!8.79e-18!102;UBERON:0002193!4.67e-15!112;UBERON:0002371!2.41e-14!80;UBERON:0004765!9.15e-13!101;UBERON:0001434!9.15e-13!101;UBERON:0001474!6.10e-12!86;UBERON:0001049!9.36e-12!57;UBERON:0005068!9.36e-12!57;UBERON:0006241!9.36e-12!57;UBERON:0007135!9.36e-12!57;UBERON:0002780!3.82e-11!41;UBERON:0001890!3.82e-11!41;UBERON:0006240!3.82e-11!41;UBERON:0002616!4.16e-11!59;UBERON:0003080!1.62e-10!42;UBERON:0002020!8.87e-10!34;UBERON:0003528!8.87e-10!34;UBERON:0002384!1.60e-09!375;UBERON:0001869!2.49e-09!32;UBERON:0002405!8.28e-09!115;UBERON:0001893!8.65e-09!34;UBERON:0000955!9.81e-09!69;UBERON:0006238!9.81e-09!69;UBERON:0002791!2.18e-08!33;UBERON:0001017!3.60e-08!82;UBERON:0002619!5.12e-07!22;UBERON:0005743!6.74e-07!86;UBERON:0000073!8.31e-07!94;UBERON:0001016!8.31e-07!94 | |||
|ontology_enrichment_uberon_v019=UBERON:0003528;3.85e-08;34!UBERON:0002020;3.85e-08;34!UBERON:0001869;3.92e-08;32!UBERON:0002791;5.43e-08;32!UBERON:0002780;9.62e-08;41!UBERON:0001890;9.62e-08;41!UBERON:0001893;2.57e-07;34!UBERON:0000073;5.06e-07;53!UBERON:0002616;5.06e-07;53 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,4.07e-19,98;UBERON:0003061,4.07e-19,98;UBERON:0007023,6.53e-19,114;UBERON:0002193,2.90e-16,108;UBERON:0002371,1.05e-15,76;UBERON:0001434,7.34e-14,100;UBERON:0004765,2.92e-13,90;UBERON:0001474,6.05e-13,82;UBERON:0002405,1.16e-12,93;UBERON:0001049,2.60e-12,56;UBERON:0005068,2.60e-12,56;UBERON:0006241,2.60e-12,56;UBERON:0007135,2.60e-12,56;UBERON:0000073,5.55e-12,53;UBERON:0002616,5.55e-12,53;UBERON:0002780,3.61e-11,41;UBERON:0001890,3.61e-11,41;UBERON:0003080,3.61e-11,41;UBERON:0006240,3.61e-11,41;UBERON:0002384,2.39e-10,371;UBERON:0003528,8.44e-10,34;UBERON:0002020,8.44e-10,34;UBERON:0001869,2.38e-09,32;UBERON:0000955,3.61e-09,68;UBERON:0006238,3.61e-09,68;UBERON:0002791,5.74e-09,32;UBERON:0001893,8.28e-09,34;UBERON:0001017,1.46e-08,81;UBERON:0001016,2.33e-08,89;UBERON:0002619,4.95e-07,22;UBERON:0003075,5.41e-07,82;UBERON:0007284,5.41e-07,82 | |||
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| ||
|short_description=p2@SHOC2 | |||
}} | }} |
Latest revision as of 09:34, 16 September 2015
Short description: | p2@SHOC2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_SHOC2_5end |
Coexpression cluster: | NA |
Association with transcript: | -4bp_to_ENST00000480155_5end |
EntrezGene: | SHOC2 |
HGNC: | 15454 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
leukocyte | 1.39e-21 | 136 |
myeloid leukocyte | 5.71e-21 | 72 |
classical monocyte | 6.86e-19 | 42 |
CD14-positive, CD16-negative classical monocyte | 6.86e-19 | 42 |
myeloid lineage restricted progenitor cell | 1.86e-18 | 66 |
granulocyte monocyte progenitor cell | 8.05e-18 | 67 |
hematopoietic lineage restricted progenitor cell | 1.06e-17 | 120 |
defensive cell | 2.61e-17 | 48 |
phagocyte | 2.61e-17 | 48 |
macrophage dendritic cell progenitor | 4.14e-16 | 61 |
monopoietic cell | 1.26e-15 | 59 |
monocyte | 1.26e-15 | 59 |
monoblast | 1.26e-15 | 59 |
promonocyte | 1.26e-15 | 59 |
nongranular leukocyte | 1.27e-15 | 115 |
hematopoietic stem cell | 2.03e-14 | 168 |
hematopoietic oligopotent progenitor cell | 3.35e-14 | 161 |
hematopoietic multipotent progenitor cell | 3.35e-14 | 161 |
myeloid cell | 3.83e-13 | 108 |
common myeloid progenitor | 3.83e-13 | 108 |
hematopoietic cell | 7.10e-12 | 177 |
mesenchymal cell | 2.08e-11 | 354 |
connective tissue cell | 3.84e-11 | 361 |
motile cell | 1.57e-08 | 386 |
multi fate stem cell | 4.98e-07 | 427 |
somatic stem cell | 9.85e-07 | 433 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 4.07e-19 | 98 |
blood island | 4.07e-19 | 98 |
adult organism | 6.53e-19 | 114 |
hemolymphoid system | 2.90e-16 | 108 |
bone marrow | 1.05e-15 | 76 |
skeletal system | 7.34e-14 | 100 |
skeletal element | 2.92e-13 | 90 |
bone element | 6.05e-13 | 82 |
immune system | 1.16e-12 | 93 |
neural tube | 2.60e-12 | 56 |
neural rod | 2.60e-12 | 56 |
future spinal cord | 2.60e-12 | 56 |
neural keel | 2.60e-12 | 56 |
regional part of nervous system | 5.55e-12 | 53 |
regional part of brain | 5.55e-12 | 53 |
regional part of forebrain | 3.61e-11 | 41 |
forebrain | 3.61e-11 | 41 |
anterior neural tube | 3.61e-11 | 41 |
future forebrain | 3.61e-11 | 41 |
connective tissue | 2.39e-10 | 371 |
brain grey matter | 8.44e-10 | 34 |
gray matter | 8.44e-10 | 34 |
cerebral hemisphere | 2.38e-09 | 32 |
brain | 3.61e-09 | 68 |
future brain | 3.61e-09 | 68 |
regional part of telencephalon | 5.74e-09 | 32 |
telencephalon | 8.28e-09 | 34 |
central nervous system | 1.46e-08 | 81 |
nervous system | 2.33e-08 | 89 |
regional part of cerebral cortex | 4.95e-07 | 22 |
neural plate | 5.41e-07 | 82 |
presumptive neural plate | 5.41e-07 | 82 |