FFCP PHASE1:Hg19::chr10:112632638..112632677,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=27250 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=8763 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=85bp_to_BX537500_5end | |||
|cluster_id=chr10:112632638..112632677,+ | |||
|coexpression_cluster_id=C2 | |||
|description=CAGE_peak_10_at_PDCD4_5end | |||
|id=chr10:112632638..112632677,+ | |||
|ontology_enrichment_celltype=CL:0000037!1.99e-32!172;CL:0000566!1.99e-32!172;CL:0000988!2.90e-32!182;CL:0002032!6.55e-29!165;CL:0000837!6.55e-29!165;CL:0000738!8.07e-25!140;CL:0002031!1.23e-19!124;CL:0002087!1.29e-19!119;CL:0000542!1.42e-15!53;CL:0000051!1.42e-15!53;CL:0000838!5.58e-15!52;CL:0000763!8.71e-14!112;CL:0000049!8.71e-14!112;CL:0000084!1.75e-09!25;CL:0000827!1.75e-09!25;CL:0000134!8.83e-09!358;CL:0000766!1.00e-08!76;CL:0000219!3.76e-08!390;CL:0002320!5.43e-08!365;CL:0000791!1.65e-07!18;CL:0000789!1.65e-07!18;CL:0002420!1.65e-07!18;CL:0002419!1.65e-07!18;CL:0000790!1.65e-07!18;CL:0000839!2.09e-07!70 | |||
|ontology_enrichment_celltype_v019=CL:0000542;2.31e-10;53!CL:0000084;3.46e-10;25!CL:0000791;6.67e-10;18!CL:0000789;6.67e-10;18!CL:0002419;6.67e-10;18!CL:0000775;8.17e-10;3!CL:0000097;8.28e-09;5!CL:0000226;2.06e-08;3!CL:0000623;2.06e-08;3!CL:0000842;2.06e-08;3!CL:0000625;5.50e-08;11!CL:0000988;5.97e-07;177 | |||
|ontology_enrichment_celltype_v019_2=CL:0000988,9.84e-28,177;CL:0000037,1.03e-25,168;CL:0000738,4.35e-22,136;CL:0002032,6.40e-22,161;CL:0000837,6.40e-22,161;CL:0000542,7.71e-19,53;CL:0000051,7.71e-19,53;CL:0000838,2.01e-17,52;CL:0002087,1.07e-14,115;CL:0002031,7.59e-14,120;CL:0000084,4.43e-10,25;CL:0000827,4.43e-10,25;CL:0000775,8.31e-10,3;CL:0000791,8.91e-10,18;CL:0000789,8.91e-10,18;CL:0002420,8.91e-10,18;CL:0002419,8.91e-10,18;CL:0000790,8.91e-10,18;CL:0000097,6.31e-09,5;CL:0002028,6.31e-09,5;CL:0000226,1.93e-08,3;CL:0000842,1.93e-08,3;CL:0000623,3.47e-08,3;CL:0000825,3.47e-08,3;CL:0000625,6.03e-08,11;CL:0000134,2.43e-07,354;CL:0000763,4.84e-07,108;CL:0000049,4.84e-07,108;CL:0002320,5.70e-07,361 | |||
|ontology_enrichment_development_v019=CL:0000051;2.31e-10;53!CL:0000790;6.67e-10;18 | |||
|ontology_enrichment_disease=DOID:2531!1.84e-13!51;DOID:0060083!1.84e-13!51;DOID:1240!1.27e-10!39;DOID:8692!1.79e-08!31 | |||
|ontology_enrichment_disease_v019=DOID:0060058;1.44e-08;10!DOID:2531;1.10e-07;51!DOID:0060083;1.10e-07;51 | |||
|ontology_enrichment_disease_v019_2=DOID:2531,7.62e-12,51;DOID:0060083,7.62e-12,51;DOID:0060058,3.01e-08,10;DOID:1240,3.32e-07,39 | |||
|ontology_enrichment_uberon=UBERON:0002390!1.18e-08!102;UBERON:0003061!1.18e-08!102;UBERON:0002384!8.32e-08!375;UBERON:0002193!7.60e-07!112 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;1.25e-07;15!UBERON:0000179;1.25e-07;15!UBERON:0000463;1.25e-07;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,1.17e-07,15;UBERON:0000179,1.17e-07,15;UBERON:0000463,1.17e-07,15 | |||
|phase1_expression=0.363356758541113,0.642301571672949,0.422863212287913,0,0,0.872338524100369,0,0,0.261185628199839,0,0,0,0,0,0,0,0,0,0,0.123121058076788,0.204000691244253,0,0,0,0.125542639594803,0.534893840235659,0.492603536699674,0.472264687882075,0,0.383829398097213,0.619264493264304,0,0,0,1.16200800870452,2.55904618477359,0.880801318004542,0.553995408531877,0.601633342410425,0.868043482863407,0.671746422719773,0.647787332037959,0.257575567634187,0.872389432677388,0,0.242584061187816,0.232429036905685,0,0,0.28769239232215,0.256160706529101,1.18241114944293,0.344745680736619,1.93645405075148,0,0.752969358170419,0.272906150057846,0.674170453335254,0.612167784741805,1.92557416245656,1.91801137739712,0,0.199463657621632,0,0.290209238628584,0.56738522469114,0.622822248995575,0.251248665256743,0,0,0,0.368277635987565,1.26584954976354,0.633765858935825,0.637812899895131,0.838634582033504,0.112328631146495,0.450530678524519,0.64290234678832,0.285012743741249,0.59675003159727,0.182664153764634,0,0,0.889509253863555,0.426730222566507,0,0.574752439954483,0,0,1.1384259382189,1.17447437874188,1.91136614062614,2.64342657158052,0.560508562981536,0,1.57367816091066,1.17903228824749,0.616804496998528,0.334372990781356,0.651844533267181,1.4203434172042,0,0.668462741311041,1.17842362989935,1.10766947291811,0.812411591295047,0.128091319725675,0.260118695119756,0.164437904603676,0.829050053357545,0.289803085735052,2.07601188426885,4.0131124213457,3.1360657141493,0.226618685395132,0.383220493601921,1.71813722741315,2.02415753615602,0.318565414324097,0.651083453856419,0,1.6563263098555,1.66382594500744,1.24930726552346,0.473554504088034,0.821127996921047,4.03213486449465,2.13952156626806,1.15859523106239,0,0,0,0,0,0.144846518960824,0,0,0.0945348171640679,0,0,0.261958150995425,0,0,0,0,0.132957960518865,0.715471872916026,2.28797964312051,0.371457501329565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.9068250461638,0,0,0,0,0.264818361626438,0.860509862246441,0.709336764396714,0,0,0,0,0,0.163461903113459,0,0,0,0,0,0,0.23486899728753,0.161872944368132,0.421352420106746,0,0,0.206651562351531,0,0,0,0,0.168336113954066,0,0,0,0,0,0.113432183160021,0,0,0,0.300091096084402,0.206105058476878,0.257640540045629,0,0,0.194874010322397,0.252433774244115,0.0920498986422993,0,0,0.201504196455281,0,0,0,0.286804595389004,0,0,0,0.10366105501537,0,0,0,0,0,0,0,0.354920400119532,0.505754070234305,0,0.110293972732394,0.653638332277218,0,0.134831308160164,0,0,0,0,0,0,0,0,0.590789906681404,0.441463099414651,0.122988438543114,0,0.109750285408626,0,0.100528972411631,0.0925884451585296,0,0,0,0,0.469634776943287,0,0,0,0,0,0,0,0,0,0,0,0.716468181622786,0.871901815541886,0,0.985326475791887,1.76096868026452,2.07328115540772,1.44119953416961,3.02981840223312,0.317489471460845,0.381988425558278,0,0,0,0.300343057843917,0,0.112131084345361,0,0.4400297149257,0.258543431515556,0,0,0.26593811658487,0,0,0,0,0.142977993658148,1.62786481617433,0,0,0.355391948742546,0,0,0,0,0,0,0,0.479249710983165,0,0,0,0,0.537182889719687,0,2.1673383622212,1.07813787429759,1.54011643535698,0,0,0,0,0,14.2311334549965,14.9580729602012,19.8919446449297,0,0,0,0,0.535286966391485,0.157702415033935,0,0,0,0,0.664225598535437,0,0.0868836144680828,0,0.343143423810856,2.27444828735176,1.72571360654893,1.17400313583789,0,0,0,0.496215615637554,0.306923946576125,0.280660094433074,0.256278298511402,0,0,0,0,0,0.164254312027618,0,0,0.483437798366489,0.200506470303285,0.184161977871793,0.114814448164607,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219259876645935,0.522870902049801,0,0,0,0.618246069886334,0.183138929636687,0.41254749960294,0,0,0,0.48335359146061,0.308097234229289,0.15350367472613,0.827019434907183,0,0.145016693914229,0.0852266274161009,0.267096106940212,0.330569830721956,0.384380134730212,0.127612712494584,0.30347334256665,0,0,0,0,0,0,0.18532421910392,0,0.744316738719335,0,0.190630193923825,0,0,0,0,0.179872457583315,0.274537029736055,0.235624804691373,0.202182481573316,0,0,0,0,0,0,0.282810863907425,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211107635297664,0,0.379473173765715,0,0,0,0,0.376575203107117,0,0,0,0,0.507447609232169,0,0,0.238231775457789,0.822724546172388,0.648473311192717,0,0,0,0.962479855263359,0.245040215981032,1.67222857613147,0.28853842595289,0.640276590135727,0.797131363644112,0.399158742865633,0.191505370132367,1.48171507906718,1.94773164164733,2.24637742490767,0.228234679033192,2.19351854082233,5.01268954180134,0.169291777801603,0.1605880751037,0.403599414382095,0,0.687010689511529,0.614481528616916,1.56573275524691,1.16794399198336,2.14926904942244,0,1.23087398947712,0.540911356951966,1.99843180798692,0,0.18714054040822,0.439524537815682,0,0.557216921387392,0,0,0,0,0,0,0,0,0,0.19924798825107,0.828851746593443,0,0.20453736500431,0.738508832766417,0,0,0,0.511572370226872,0.295930216910801,2.3948309234694,0,0.969332746095218,0,0,0,0.0874599999961957,0.724999575434793,0.1137934482855,0,0.236387681767936,0.689486746482929,0.874813840149763,0.173624994933292,0,0.241192877250816,0,0.110579259931225,0.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| |||
|short_description=p10@PDCD4 | |||
}} |
Latest revision as of 09:20, 16 September 2015
Short description: | p10@PDCD4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_10_at_PDCD4_5end |
Coexpression cluster: | C2_Eosinophils_Neutrophils_CD14_Whole_Basophils_Peripheral_Mast |
Association with transcript: | 85bp_to_BX537500_5end |
EntrezGene: | PDCD4 |
HGNC: | 8763 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic cell | 9.84e-28 | 177 |
hematopoietic stem cell | 1.03e-25 | 168 |
leukocyte | 4.35e-22 | 136 |
hematopoietic oligopotent progenitor cell | 6.40e-22 | 161 |
hematopoietic multipotent progenitor cell | 6.40e-22 | 161 |
lymphocyte | 7.71e-19 | 53 |
common lymphoid progenitor | 7.71e-19 | 53 |
lymphoid lineage restricted progenitor cell | 2.01e-17 | 52 |
nongranular leukocyte | 1.07e-14 | 115 |
hematopoietic lineage restricted progenitor cell | 7.59e-14 | 120 |
T cell | 4.43e-10 | 25 |
pro-T cell | 4.43e-10 | 25 |
neutrophil | 8.31e-10 | 3 |
mature alpha-beta T cell | 8.91e-10 | 18 |
alpha-beta T cell | 8.91e-10 | 18 |
immature T cell | 8.91e-10 | 18 |
mature T cell | 8.91e-10 | 18 |
immature alpha-beta T cell | 8.91e-10 | 18 |
mast cell | 6.31e-09 | 5 |
basophil mast progenitor cell | 6.31e-09 | 5 |
single nucleate cell | 1.93e-08 | 3 |
mononuclear cell | 1.93e-08 | 3 |
natural killer cell | 3.47e-08 | 3 |
pro-NK cell | 3.47e-08 | 3 |
CD8-positive, alpha-beta T cell | 6.03e-08 | 11 |
mesenchymal cell | 2.43e-07 | 354 |
myeloid cell | 4.84e-07 | 108 |
common myeloid progenitor | 4.84e-07 | 108 |
connective tissue cell | 5.70e-07 | 361 |
Ontology term | p-value | n |
---|---|---|
blood | 1.17e-07 | 15 |
haemolymphatic fluid | 1.17e-07 | 15 |
organism substance | 1.17e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
hematologic cancer | 7.62e-12 | 51 |
immune system cancer | 7.62e-12 | 51 |
lymphoma | 3.01e-08 | 10 |
leukemia | 3.32e-07 | 39 |