FFCP PHASE1:Hg19::chr10:112404166..112404180,+: Difference between revisions
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(Created page with "{{FFCP
|id=chr10:112404166..112404180,+
|short_description=p5@RBM20
|description=CAGE_peak_5_at_RBM20_5end
|association_with_transcript=11bp_to_ENST00000369519,ENST0000053...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=282996 | |EntrezGene=282996 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=27424 | |HGNC=27424 | ||
|UniProt=Q5T481, | |TSSclassifier=strong | ||
|UniProt=Q5T481,F5GXH8 | |||
|association_with_transcript=11bp_to_ENST00000369519,ENST00000539821,NM_001134363,uc001kzf.2_5end | |||
|cluster_id=chr10:112404166..112404180,+ | |||
|coexpression_cluster_id=C1104 | |||
|description=CAGE_peak_5_at_RBM20_5end | |||
|id=chr10:112404166..112404180,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0002605;2.77e-13;3!CL:0000128;8.63e-10;7!CL:0000126;8.63e-10;7!CL:0000127;8.63e-10;7 | |||
|ontology_enrichment_celltype_v019_2=CL:0002605,2.34e-13,3;CL:0000128,1.02e-09,7;CL:0000126,1.02e-09,7;CL:0000127,1.02e-09,7;CL:0002453,1.02e-09,7 | |||
|ontology_enrichment_development_v019=UBERON:0005062;6.94e-11;4!UBERON:0007284;6.94e-11;4 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:114;2.15e-10;2!DOID:5409;2.72e-10;4!DOID:3119;1.43e-07;14 | |||
|ontology_enrichment_disease_v019_2=DOID:5409,2.11e-10,4;DOID:114,2.11e-10,2;DOID:3119,1.85e-07,14;DOID:0050687,2.72e-07,143 | |||
|ontology_enrichment_uberon=UBERON:0007023!1.38e-16!115;UBERON:0000073!1.09e-10!94;UBERON:0001016!1.09e-10!94;UBERON:0005743!2.67e-10!86;UBERON:0001017!5.91e-10!82;UBERON:0003075!6.08e-10!86;UBERON:0007284!6.08e-10!86;UBERON:0000955!1.11e-09!69;UBERON:0006238!1.11e-09!69;UBERON:0002346!1.15e-09!90;UBERON:0001049!1.24e-07!57;UBERON:0005068!1.24e-07!57;UBERON:0006241!1.24e-07!57;UBERON:0007135!1.24e-07!57;UBERON:0003056!3.47e-07!61;UBERON:0002616!4.46e-07!59;UBERON:0000033!5.43e-07!123;UBERON:0004121!9.17e-07!169;UBERON:0003103!9.69e-07!69 | |||
|ontology_enrichment_uberon_v019=UBERON:0007100;2.58e-16;25!UBERON:0004151;2.06e-14;3!UBERON:0003978;2.31e-14;3!UBERON:0000946;2.31e-14;3!UBERON:0002081;3.79e-10;2!UBERON:0002133;5.06e-10;2!UBERON:0000948;3.25e-09;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007100,6.20e-15,27;UBERON:0004151,1.77e-14,3;UBERON:0003978,2.21e-14,3;UBERON:0009751,2.21e-14,3;UBERON:0000946,2.21e-14,3;UBERON:0002523,2.21e-14,3;UBERON:0005983,2.21e-14,3;UBERON:0002165,2.21e-14,3;UBERON:0002062,2.21e-14,3;UBERON:0007280,2.21e-14,3;UBERON:0002081,3.47e-10,2;UBERON:0010227,3.47e-10,2;UBERON:0002133,4.96e-10,2;UBERON:0000948,2.50e-08,24;UBERON:0005498,2.50e-08,24;UBERON:0004140,2.50e-08,24;UBERON:0009881,2.50e-08,24;UBERON:0004141,2.50e-08,24;UBERON:0003084,2.50e-08,24;UBERON:0007005,2.50e-08,24;UBERON:0004139,2.50e-08,24;UBERON:0004291,2.50e-08,24 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0.261185628199839,0,0,0,0,0,0,0,0,0,0,0.123121058076788,0,0,1.43117993565528,1.50561867580173,2.13422487311165,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.56738522469114,0,0,0,0.217188844705117,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.276350017785848,0,0,0,0,0.113309342697566,0,0,0,0,0,0,0,0.127986611154418,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.189069634328136,0.221729397462564,0,0.196468613246569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.24406205754817,0,0,0,0.22452937262617,0,0,0,0,0,0,0,0.496971951695318,0.25326102332916,0,0,0,1.12135520028461,0,0.24666754841716,0,0,0,0.151357427644931,0,0,0,0,0,0,0,0.140450806702248,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.257640540045629,0,0,0,0,0,0,0,0,0,0,0,0,0.121973706129595,0.132529768321485,0,0.10366105501537,0,0,0,0,0,0,0,0,0.168584690078102,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171567810298526,0,0,0,0,0,0,0,1.27523445472584,0.234817388471643,0,0,0.380508304469197,1.58040879591855,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112131084345361,0.43596006883328,0.07333828582095,0.129271715757778,0,0,0,0,0,0,0.266422179016099,0,0,0,0,0,0,0,0,0.099972991182057,0,0,0,0,0,0,0.289562613335158,0,0,0,0,0,0,0.254094624222463,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.391602314925481,1.37257369524342,0,0,0,0,0,0,0,0,0,0.128139149255701,0,0,0,0,0,0,0,0.116210378459959,0,0,0,0,0,0,0.451199612907412,0.15403067420883,0,0,0.316654886678627,0,0.340187410553031,0.215915916102139,0,0.270946437543853,0,0,0,0,0,0,0.256450125116389,0,0,0.103041011647722,1.19040304263846,0.660075999364704,0,0,0,0,0,0,0,0,0.145016693914229,0.170453254832202,0.0890320356467374,0,0,0,0.10115778085555,0,0.31481234683064,0,0,0,0,0.18532421910392,0.286249773483982,0,0.316379424718726,0,0,0,0,0,0,0.274537029736055,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0982490410131212,0,0,0,0,0,0.349934720244983,0,0,0,0.188287601553558,0,0,0,0,0,0,0,0,0,0,0,0,0.747768497892312,0,0.245040215981032,0.743212700502875,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.293016358543788,0.485442086998054,0.111443384277478,0.852408440419239,0,0,0,0,0,0.222617410045812,0,0,6.37593562403423,0.276283915531148,0,1.02268682502155,0,0,0,0,0,0.0986434056369336,0,0,0.969332746095218,0,0,0,0,0.724999575434793,0.1137934482855,0,0.236387681767936,1.03423011972439,0.874813840149763,0,0.885741385813839,0,0,0,0.295547618953547,0,0,0,0.0769502585037971,0,0,0,0,0,0,0,0,0,0.166211681900156,0.902382642468723,1.56850027454192,0.503464760927528,0,0,0.210998064528027,0,0,5.19332735381019,0.995261931078505,0.176915129006678,0,0,0,0,0.337005664903385,0.802577647298789,0.234264445725339,0,0.586993856796269,0,0,0,0.30607276163049,0.442306057399416,0.300646838828985,0.311064574191741,0,0.661983911750998,0.627865836814451,0,0,0,0,0,0,0.873633341210151,0,0,0,0,0.387956065953678,0.264768380074501,0,0.137041924646751,0,0.0633107959558787,0,0,0.213452994739353,0.39961921916426,0,4.46692725047071,0,0,1.73953549791606,0.235694034616795,0.135904206073614,0.104602846312333,0.407992870545287,0,0.600420288709789,0,0,0,0,5.02708322290058,6.41649187232714,2.87149209830726,5.59101201397175,9.01374701086799,2.90122894674434,13.7054283872922,0.360299883542404,1.16495949527454,0,0,0,0.492137407573744,0,0,0.272406812223151,0.160753148465019,0.137539436597234,0,0.2249738915515,0,0.242998226632099,0,0.157611414598396,0.734364233889974,0,0.896436696664224,0,7.86164859010704,5.95882773328889,0.25426853765475,0,0,0,0,0,0,0.113312091520126,0,0,0.129282956361551,0.13223260174269,1.88195521672762,0,0.213574825135389,0.157204305099666,0,0,0.197611631897944,0,0,0,0,0.306345576763462,0,4.86867698375726,0,0.122026264901963,0,0,0.110929051536852,0.310482014706917,6.64073447693908,0.124980407962107,0.151649117541648,0.285465333544967,0,0,0,0,0,0,0,0,0,0,0,0.15543720058278,0,0,0.449803112163605,0,0,0,0,0,0.380805212168795,0,0.181848659202559,0,0,0,0,0,0,1.26184898228651,0,0,0,0,0,0,0,0,0,0.353378291891762,0,0,0,0,0.303859956177382,0.138258436151731,0,0,0,0,0,0,0.19998739585493,0,0,0,0,0,0,0,1.61737217095023,0.157265941855896,4.04075661310451,0,0,0.867550349813015,0,0,0.157723490002507,0,0,0.3062454773532,0.321146125482298,0,0.159633859057151,0.41023272848151,0,0.0691572524642179,0.322951291263702,0,0,0.11796972334774,0,0.115525666150338,0,0.690359926060101,0.596748666348824,0.0752103283492573,0.20170506870352,0,0,0,0,0.337687923091973,0,0,0.126831620387814,0,0,0.496211178389294,0,0.255524855279191,0.535701835878287,0.336283722218824,0.606965604236632,0,0,0,0,0.271878931907327,0,0,0,0.235479278551542,0,0,0.913158720509496,0,0,0.643288897589907,0.632054446930906,1.3948971044175,1.21700790611806,0,0.207216164163037,0,0,0,0.118332000730565,0,0,0.22910686854405,0.31020638566432,0,0,0,0,3.23714418593947,3.2852098193999,0,0.485710993059139,0.233939463462106,1.19370465096821,0.594600453887843,2.48481380485712,1.64910775118144,2.8682940277668,0.154348316215889,0.437119121007915,2.35158648180761,0.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| ||
|short_description=p5@RBM20 | |||
}} | }} |
Latest revision as of 09:05, 16 September 2015
Short description: | p5@RBM20 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_RBM20_5end |
Coexpression cluster: | C1104_heart_maxillary_teratocarcinoma_left_neuroblastoma_small_medulloblastoma |
Association with transcript: | 11bp_to_ENST00000369519, ENST00000539821, NM_001134363, uc001kzf.2_5end |
EntrezGene: | RBM20 |
HGNC: | 27424 |
UniProt: | Q5T481F5GXH8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
astrocyte of the cerebral cortex | 2.34e-13 | 3 |
oligodendrocyte | 1.02e-09 | 7 |
macroglial cell | 1.02e-09 | 7 |
astrocyte | 1.02e-09 | 7 |
oligodendrocyte precursor cell | 1.02e-09 | 7 |
Ontology term | p-value | n |
---|---|---|
primary circulatory organ | 6.20e-15 | 27 |
cardiac chamber | 1.77e-14 | 3 |
valve | 2.21e-14 | 3 |
cardiac mesenchyme | 2.21e-14 | 3 |
cardial valve | 2.21e-14 | 3 |
tunica intima | 2.21e-14 | 3 |
heart layer | 2.21e-14 | 3 |
endocardium | 2.21e-14 | 3 |
endocardial cushion | 2.21e-14 | 3 |
presumptive endocardium | 2.21e-14 | 3 |
cardiac atrium | 3.47e-10 | 2 |
future cardiac atrium | 3.47e-10 | 2 |
atrioventricular valve | 4.96e-10 | 2 |
heart | 2.50e-08 | 24 |
primitive heart tube | 2.50e-08 | 24 |
primary heart field | 2.50e-08 | 24 |
anterior lateral plate mesoderm | 2.50e-08 | 24 |
heart tube | 2.50e-08 | 24 |
heart primordium | 2.50e-08 | 24 |
cardiac mesoderm | 2.50e-08 | 24 |
cardiogenic plate | 2.50e-08 | 24 |
heart rudiment | 2.50e-08 | 24 |
Ontology term | p-value | n |
---|---|---|
lung small cell carcinoma | 2.11e-10 | 4 |
heart disease | 2.11e-10 | 2 |
gastrointestinal system cancer | 1.85e-07 | 14 |
cell type cancer | 2.72e-07 | 143 |