FFCP PHASE1:Hg19::chr4:15704679..15704733,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr4:15704679..15704733,+ to FFCP PHASE1:Hg19::chr4:15704679..15704733,+: NSchange) |
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(12 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=683 | |EntrezGene=683 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1118 | |HGNC=1118 | ||
|TSSclassifier=strong | |||
|UniProt=A6NC48 | |UniProt=A6NC48 | ||
|association_with_transcript=0bp_to_ENST00000382346_5end | |||
|cluster_id=chr4:15704679..15704733,+ | |||
|coexpression_cluster_id=C4382 | |||
|description=CAGE_peak_1_at_BST1_5end | |||
|id=chr4:15704679..15704733,+ | |||
|ontology_enrichment_celltype=CL:0000766!6.72e-26!76;CL:0000048!1.37e-25!430;CL:0000723!5.36e-24!436;CL:0000034!1.05e-23!444;CL:0002194!4.86e-21!63;CL:0000576!4.86e-21!63;CL:0000040!4.86e-21!63;CL:0000559!4.86e-21!63;CL:0002057!1.78e-20!42;CL:0000557!1.33e-19!71;CL:0000839!1.34e-19!70;CL:0002009!1.43e-19!65;CL:0002371!2.97e-19!591;CL:0000144!4.59e-17!625;CL:0000860!5.01e-17!45;CL:0000134!5.27e-15!358;CL:0002320!5.37e-15!365;CL:0000763!8.75e-14!112;CL:0000049!8.75e-14!112;CL:0000219!4.23e-13!390;CL:0000055!8.07e-11!180;CL:0000222!1.28e-10!119;CL:0000183!9.79e-08!59;CL:0000192!2.48e-07!42;CL:0000514!2.48e-07!42;CL:0000057!3.14e-07!75;CL:0000680!3.25e-07!57;CL:0000056!3.25e-07!57;CL:0000355!3.25e-07!57;CL:0000187!3.30e-07!54 | |||
|ontology_enrichment_celltype_v019=CL:0000860;3.68e-16;33!CL:0002057;3.68e-16;33!CL:0000473;4.61e-16;39!CL:0000234;4.61e-16;39!CL:0000576;1.06e-15;48!CL:0000766;8.44e-14;69!CL:0000094;5.96e-07;8!CL:0000763;6.72e-07;100 | |||
|ontology_enrichment_celltype_v019_2=CL:0000766,7.69e-30,72;CL:0000048,8.81e-29,427;CL:0000723,6.27e-27,433;CL:0000034,4.06e-26,441;CL:0002194,1.04e-24,59;CL:0000576,1.04e-24,59;CL:0000040,1.04e-24,59;CL:0000559,1.04e-24,59;CL:0000473,2.61e-24,48;CL:0000234,2.61e-24,48;CL:0002009,8.53e-23,61;CL:0000557,1.14e-22,67;CL:0000839,1.16e-22,66;CL:0000860,2.10e-21,42;CL:0002057,2.10e-21,42;CL:0000134,9.16e-18,354;CL:0002320,9.60e-18,361;CL:0000763,6.86e-16,108;CL:0000049,6.86e-16,108;CL:0000219,9.76e-16,386;CL:0000222,2.40e-11,121;CL:0000192,1.11e-07,43;CL:0000514,1.11e-07,43;CL:0000057,1.65e-07,76;CL:0000680,2.23e-07,58;CL:0000056,2.23e-07,58;CL:0000355,2.23e-07,58;CL:0000187,2.30e-07,55;CL:0000094,6.06e-07,8;CL:0000359,7.00e-07,32 | |||
|ontology_enrichment_development_v019=CL:0002057;6.40e-16;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003081!4.24e-35!216;UBERON:0002204!2.12e-22!167;UBERON:0002193!1.92e-20!112;UBERON:0002390!3.40e-18!102;UBERON:0003061!3.40e-18!102;UBERON:0004535!2.25e-17!110;UBERON:0002371!2.79e-17!80;UBERON:0001009!5.76e-17!113;UBERON:0001474!6.73e-15!86;UBERON:0002384!8.37e-15!375;UBERON:0004765!3.38e-14!101;UBERON:0001434!3.38e-14!101;UBERON:0002405!8.73e-14!115;UBERON:0002049!6.31e-13!79;UBERON:0007798!6.31e-13!79;UBERON:0000926!8.59e-12!448;UBERON:0004120!8.59e-12!448;UBERON:0006603!8.59e-12!448;UBERON:0004872!3.30e-11!84;UBERON:0000055!6.96e-11!69;UBERON:0001981!2.96e-09!60;UBERON:0007500!2.96e-09!60;UBERON:0004537!2.96e-09!60;UBERON:0006965!2.96e-09!60;UBERON:0001637!1.81e-07!42;UBERON:0003509!1.81e-07!42;UBERON:0004572!1.81e-07!42;UBERON:0003914!2.70e-07!118;UBERON:0000468!3.60e-07!659;UBERON:0002385!6.71e-07!63;UBERON:0001015!6.71e-07!63;UBERON:0000383!6.71e-07!63 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003081,1.22e-37,203;UBERON:0000926,1.17e-34,315;UBERON:0004120,1.17e-34,315;UBERON:0006603,1.17e-34,315;UBERON:0002204,6.29e-24,167;UBERON:0002193,7.04e-24,108;UBERON:0002390,1.77e-21,98;UBERON:0003061,1.77e-21,98;UBERON:0002405,3.93e-20,93;UBERON:0002371,4.23e-20,76;UBERON:0004535,1.98e-17,109;UBERON:0002384,2.08e-17,371;UBERON:0001474,3.02e-17,82;UBERON:0001009,1.60e-16,112;UBERON:0001434,1.23e-15,100;UBERON:0004765,1.32e-15,90;UBERON:0002049,1.70e-12,78;UBERON:0007798,1.70e-12,78;UBERON:0004872,4.71e-11,83;UBERON:0000055,1.11e-10,68;UBERON:0007500,6.69e-09,59;UBERON:0001981,6.69e-09,59;UBERON:0004537,6.69e-09,59;UBERON:0006965,6.69e-09,59;UBERON:0003914,6.07e-08,117;UBERON:0001637,9.28e-08,42;UBERON:0003509,9.28e-08,42;UBERON:0004572,9.28e-08,42;UBERON:0002385,6.52e-07,64;UBERON:0001015,6.52e-07,64;UBERON:0000383,6.52e-07,64;UBERON:0000479,9.07e-07,773 | |||
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| ||
|short_description=p1@BST1 | |||
}} | }} |
Latest revision as of 08:49, 16 September 2015
Short description: | p1@BST1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_BST1_5end |
Coexpression cluster: | C4382_basal_hepatic_Eosinophils_Adipocyte_Preadipocyte_Neutrophils_Ewing |
Association with transcript: | 0bp_to_ENST00000382346_5end |
EntrezGene: | BST1 |
HGNC: | 1118 |
UniProt: | A6NC48 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid leukocyte | 7.69e-30 | 72 |
multi fate stem cell | 8.81e-29 | 427 |
somatic stem cell | 6.27e-27 | 433 |
stem cell | 4.06e-26 | 441 |
monopoietic cell | 1.04e-24 | 59 |
monocyte | 1.04e-24 | 59 |
monoblast | 1.04e-24 | 59 |
promonocyte | 1.04e-24 | 59 |
defensive cell | 2.61e-24 | 48 |
phagocyte | 2.61e-24 | 48 |
macrophage dendritic cell progenitor | 8.53e-23 | 61 |
granulocyte monocyte progenitor cell | 1.14e-22 | 67 |
myeloid lineage restricted progenitor cell | 1.16e-22 | 66 |
classical monocyte | 2.10e-21 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.10e-21 | 42 |
mesenchymal cell | 9.16e-18 | 354 |
connective tissue cell | 9.60e-18 | 361 |
myeloid cell | 6.86e-16 | 108 |
common myeloid progenitor | 6.86e-16 | 108 |
motile cell | 9.76e-16 | 386 |
mesodermal cell | 2.40e-11 | 121 |
smooth muscle cell | 1.11e-07 | 43 |
smooth muscle myoblast | 1.11e-07 | 43 |
fibroblast | 1.65e-07 | 76 |
muscle precursor cell | 2.23e-07 | 58 |
myoblast | 2.23e-07 | 58 |
multi-potent skeletal muscle stem cell | 2.23e-07 | 58 |
muscle cell | 2.30e-07 | 55 |
granulocyte | 6.06e-07 | 8 |
vascular associated smooth muscle cell | 7.00e-07 | 32 |
Ontology term | p-value | n |
---|---|---|
lateral plate mesoderm | 1.22e-37 | 203 |
mesoderm | 1.17e-34 | 315 |
mesoderm-derived structure | 1.17e-34 | 315 |
presumptive mesoderm | 1.17e-34 | 315 |
musculoskeletal system | 6.29e-24 | 167 |
hemolymphoid system | 7.04e-24 | 108 |
hematopoietic system | 1.77e-21 | 98 |
blood island | 1.77e-21 | 98 |
immune system | 3.93e-20 | 93 |
bone marrow | 4.23e-20 | 76 |
cardiovascular system | 1.98e-17 | 109 |
connective tissue | 2.08e-17 | 371 |
bone element | 3.02e-17 | 82 |
circulatory system | 1.60e-16 | 112 |
skeletal system | 1.23e-15 | 100 |
skeletal element | 1.32e-15 | 90 |
vasculature | 1.70e-12 | 78 |
vascular system | 1.70e-12 | 78 |
splanchnic layer of lateral plate mesoderm | 4.71e-11 | 83 |
vessel | 1.11e-10 | 68 |
epithelial tube open at both ends | 6.69e-09 | 59 |
blood vessel | 6.69e-09 | 59 |
blood vasculature | 6.69e-09 | 59 |
vascular cord | 6.69e-09 | 59 |
epithelial tube | 6.07e-08 | 117 |
artery | 9.28e-08 | 42 |
arterial blood vessel | 9.28e-08 | 42 |
arterial system | 9.28e-08 | 42 |
muscle tissue | 6.52e-07 | 64 |
musculature | 6.52e-07 | 64 |
musculature of body | 6.52e-07 | 64 |
tissue | 9.07e-07 | 773 |