FFCP PHASE1:Hg19::chr16:3063137..3063169,+: Difference between revisions
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(Created page with "{{FFCP
|id=chr16:3063137..3063169,+
|short_description=p3@CLDN9
|description=CAGE_peak_3_at_CLDN9_5end
|association_with_transcript=8bp_to_BC065830_5end
|EntrezGene=9080
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=9080 | |EntrezGene=9080 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=2051 | |HGNC=2051 | ||
|TSSclassifier=strong | |||
|UniProt=O95484 | |UniProt=O95484 | ||
|association_with_transcript=8bp_to_BC065830_5end | |||
|cluster_id=chr16:3063137..3063169,+ | |||
|coexpression_cluster_id=C171 | |||
|description=CAGE_peak_3_at_CLDN9_5end | |||
|id=chr16:3063137..3063169,+ | |||
|ontology_enrichment_celltype=CL:0002322!8.94e-22!5;CL:0000066!8.48e-14!254;CL:0000242!9.63e-11!2;CL:1000415!3.32e-09!2;CL:1000507!5.17e-09!12;CL:1000494!5.17e-09!12;CL:0000349!3.51e-07!3;CL:0002577!3.51e-07!3 | |||
|ontology_enrichment_celltype_v019=CL:0000123;1.31e-57;2!CL:0000242;1.31e-57;2!CL:0000312;8.57e-24;5!CL:0000240;5.10e-20;6!CL:0000311;5.10e-20;6!CL:0000079;5.10e-20;6!CL:0000237;5.10e-20;6!CL:0000362;1.05e-13;9!CL:0000322;1.14e-10;3!CL:0002577;1.14e-10;3!CL:0002159;3.65e-09;14!CL:0000095;5.42e-07;17 | |||
|ontology_enrichment_celltype_v019_2=CL:0000242,1.13e-57,2;CL:0000312,8.09e-24,5;CL:0000240,4.86e-20,6;CL:0000311,4.86e-20,6;CL:0000079,4.86e-20,6;CL:0000237,4.86e-20,6;CL:0000036,4.86e-20,6;CL:0000357,4.86e-20,6;CL:0000114,4.86e-20,6;CL:0000362,1.02e-13,9;CL:0000322,1.09e-10,3;CL:0002577,1.20e-10,3;CL:0002159,3.58e-09,14;CL:0000095,5.34e-07,17;CL:0000123,5.34e-07,17 | |||
|ontology_enrichment_development_v019=CL:0000357;5.10e-20;6!CL:0000114;5.10e-20;6 | |||
|ontology_enrichment_disease=DOID:305!2.89e-15!106;DOID:0050687!5.32e-10!143;DOID:299!3.26e-08!25 | |||
|ontology_enrichment_disease_v019=DOID:5093;2.94e-29;4!DOID:1612;2.94e-29;4!DOID:3910;2.55e-15;2!DOID:299;6.36e-11;25!DOID:3908;6.58e-07;5 | |||
|ontology_enrichment_disease_v019_2=DOID:5093,3.16e-29,4;DOID:1612,3.16e-29,4;DOID:3910,2.37e-15,2;DOID:299,6.47e-11,25;DOID:305,7.18e-10,106;DOID:0050687,2.36e-07,143;DOID:3908,6.39e-07,5 | |||
|ontology_enrichment_uberon=UBERON:0005631!9.93e-15!14;UBERON:0000158!9.93e-15!14;UBERON:0001987!1.17e-10!4;UBERON:0004340!1.17e-10!4;UBERON:0002553!1.34e-10!70;UBERON:0003886!1.98e-10!63;UBERON:0003124!2.49e-10!7;UBERON:0009773!5.17e-09!12;UBERON:0001231!5.17e-09!12;UBERON:0004810!5.17e-09!12;UBERON:0000464!2.71e-08!104;UBERON:0000478!3.43e-08!24;UBERON:0000058!1.68e-07!26;UBERON:0004923!3.66e-07!57;UBERON:0000466!3.69e-07!126 | |||
|ontology_enrichment_uberon_v019=UBERON:0004903;2.55e-15;2!UBERON:0002173;2.55e-15;2!UBERON:0002186;2.55e-15;2!UBERON:0000310;2.31e-12;10!UBERON:0001443;2.48e-11;11!UBERON:0004821;1.14e-10;3!UBERON:0007499;1.14e-10;3!UBERON:0003215;1.14e-10;3!UBERON:0010368;1.14e-10;3!UBERON:0009911;1.14e-10;3!UBERON:0002299;1.14e-10;3!UBERON:0006524;1.14e-10;3!UBERON:0008874;1.14e-10;3!UBERON:0002169;1.14e-10;3!UBERON:0004894;1.14e-10;3!UBERON:0001003;1.29e-08;15!UBERON:0007376;1.29e-08;15!UBERON:0001987;2.52e-08;4!UBERON:0009856;2.52e-08;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004903,2.37e-15,2;UBERON:0002173,2.37e-15,2;UBERON:0002186,2.37e-15,2;UBERON:0000310,2.37e-12,10;UBERON:0001443,2.55e-11,11;UBERON:0004821,1.09e-10,3;UBERON:0003215,1.09e-10,3;UBERON:0010368,1.09e-10,3;UBERON:0009911,1.09e-10,3;UBERON:0002299,1.09e-10,3;UBERON:0006524,1.09e-10,3;UBERON:0008874,1.09e-10,3;UBERON:0002169,1.09e-10,3;UBERON:0004894,1.09e-10,3;UBERON:0001003,1.27e-08,15;UBERON:0007376,1.27e-08,15;UBERON:0007383,1.27e-08,15;UBERON:0001987,2.61e-08,4;UBERON:0004340,2.61e-08,4 | |||
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| ||
|short_description=p3@CLDN9 | |||
}} | }} |
Latest revision as of 08:20, 16 September 2015
Short description: | p3@CLDN9 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_CLDN9_5end |
Coexpression cluster: | C171_merkel_neuroblastoma_pineal_retinoblastoma_carcinoid_small_eye |
Association with transcript: | 8bp_to_BC065830_5end |
EntrezGene: | CLDN9 |
HGNC: | 2051 |
UniProt: | O95484 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
Merkel cell | 1.13e-57 | 2 |
keratinocyte | 8.09e-24 | 5 |
stratified squamous epithelial cell | 4.86e-20 | 6 |
keratin accumulating cell | 4.86e-20 | 6 |
stratified epithelial cell | 4.86e-20 | 6 |
keratinizing barrier epithelial cell | 4.86e-20 | 6 |
epithelial fate stem cell | 4.86e-20 | 6 |
stratified epithelial stem cell | 4.86e-20 | 6 |
surface ectodermal cell | 4.86e-20 | 6 |
epidermal cell | 1.02e-13 | 9 |
pneumocyte | 1.09e-10 | 3 |
placental epithelial cell | 1.20e-10 | 3 |
general ecto-epithelial cell | 3.58e-09 | 14 |
neuron associated cell | 5.34e-07 | 17 |
neuron associated cell (sensu Vertebrata) | 5.34e-07 | 17 |
Ontology term | p-value | n |
---|---|---|
bronchoalveolar duct junction | 2.37e-15 | 2 |
alveolar duct | 2.37e-15 | 2 |
bronchiole | 2.37e-15 | 2 |
breast | 2.37e-12 | 10 |
chest | 2.55e-11 | 11 |
pulmonary alveolus epithelium | 1.09e-10 | 3 |
alveolus | 1.09e-10 | 3 |
pulmonary lobule | 1.09e-10 | 3 |
lobule | 1.09e-10 | 3 |
alveolus of lung | 1.09e-10 | 3 |
alveolar system | 1.09e-10 | 3 |
pulmonary acinus | 1.09e-10 | 3 |
alveolar sac | 1.09e-10 | 3 |
alveolar wall | 1.09e-10 | 3 |
skin epidermis | 1.27e-08 | 15 |
outer epithelium | 1.27e-08 | 15 |
enveloping layer of ectoderm | 1.27e-08 | 15 |
placenta | 2.61e-08 | 4 |
allantois | 2.61e-08 | 4 |
Ontology term | p-value | n |
---|---|---|
thoracic cancer | 3.16e-29 | 4 |
breast cancer | 3.16e-29 | 4 |
lung adenocarcinoma | 2.37e-15 | 2 |
adenocarcinoma | 6.47e-11 | 25 |
carcinoma | 7.18e-10 | 106 |
cell type cancer | 2.36e-07 | 143 |
non-small cell lung carcinoma | 6.39e-07 | 5 |