FFCP PHASE1:Hg19::chr10:112064654..112064663,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr10:112064654..112064663,- to FFCP PHASE1:Hg19::chr10:112064654..112064663,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=10285 | |EntrezGene=10285 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=16900 | |HGNC=16900 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000460483_5end | |||
|cluster_id=chr10:112064654..112064663,- | |||
|coexpression_cluster_id=C2 | |||
|description=CAGE_peak_3_at_SMNDC1_5end | |||
|id=chr10:112064654..112064663,- | |||
|ontology_enrichment_celltype=CL:0000037!1.78e-31!172;CL:0000566!1.78e-31!172;CL:0000738!9.65e-31!140;CL:0002032!1.24e-29!165;CL:0000837!1.24e-29!165;CL:0000988!7.50e-28!182;CL:0000766!2.69e-25!76;CL:0000763!8.84e-25!112;CL:0000049!8.84e-25!112;CL:0002087!4.15e-24!119;CL:0002031!7.02e-24!124;CL:0002057!4.24e-23!42;CL:0000860!1.18e-22!45;CL:0000557!2.40e-21!71;CL:0002009!6.92e-21!65;CL:0002194!8.36e-20!63;CL:0000576!8.36e-20!63;CL:0000040!8.36e-20!63;CL:0000559!8.36e-20!63;CL:0000839!1.00e-19!70;CL:0000134!3.74e-08!358;CL:0000219!4.99e-08!390;CL:0002320!3.57e-07!365;CL:0000034!4.00e-07!444 | |||
|ontology_enrichment_celltype_v019=CL:0000860;1.77e-20;33!CL:0002057;1.77e-20;33!CL:0000473;1.08e-15;39!CL:0000234;1.08e-15;39!CL:0000576;3.22e-15;48!CL:0000766;2.59e-13;69!CL:0002087;3.85e-09;104!CL:0000763;1.46e-08;100!CL:0000738;4.89e-08;136!CL:0000094;4.56e-07;8 | |||
|ontology_enrichment_celltype_v019_2=CL:0000037,9.46e-33,168;CL:0000738,7.88e-32,136;CL:0002032,5.15e-31,161;CL:0000837,5.15e-31,161;CL:0000988,2.40e-29,177;CL:0000766,2.46e-27,72;CL:0000763,1.21e-26,108;CL:0000049,1.21e-26,108;CL:0002087,4.36e-25,115;CL:0002031,1.22e-24,120;CL:0000860,3.80e-24,42;CL:0002057,3.80e-24,42;CL:0000557,4.34e-23,67;CL:0002009,1.11e-22,61;CL:0000473,2.49e-22,48;CL:0000234,2.49e-22,48;CL:0002194,1.59e-21,59;CL:0000576,1.59e-21,59;CL:0000040,1.59e-21,59;CL:0000559,1.59e-21,59;CL:0000839,4.20e-21,66;CL:0000134,6.94e-08,354;CL:0000219,1.26e-07,386;CL:0002320,7.80e-07,361 | |||
|ontology_enrichment_development_v019=CL:0002057;2.76e-18;42!CL:0000049;3.74e-08;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!3.50e-23!102;UBERON:0003061!3.50e-23!102;UBERON:0002193!3.36e-20!112;UBERON:0002371!4.67e-20!80;UBERON:0001474!2.17e-18!86;UBERON:0004765!3.91e-14!101;UBERON:0001434!3.91e-14!101;UBERON:0002405!9.66e-13!115;UBERON:0002204!3.14e-07!167 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,4.02e-25,98;UBERON:0003061,4.02e-25,98;UBERON:0002193,3.63e-22,108;UBERON:0002371,1.31e-21,76;UBERON:0001474,4.18e-20,82;UBERON:0002405,1.88e-18,93;UBERON:0004765,1.48e-15,90;UBERON:0001434,2.50e-13,100;UBERON:0003081,3.63e-07,203 | |||
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| ||
|short_description=p3@SMNDC1 | |||
}} | }} |
Latest revision as of 08:16, 16 September 2015
Short description: | p3@SMNDC1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_SMNDC1_5end |
Coexpression cluster: | C2_Eosinophils_Neutrophils_CD14_Whole_Basophils_Peripheral_Mast |
Association with transcript: | 0bp_to_ENST00000460483_5end |
EntrezGene: | SMNDC1 |
HGNC: | 16900 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic stem cell | 9.46e-33 | 168 |
leukocyte | 7.88e-32 | 136 |
hematopoietic oligopotent progenitor cell | 5.15e-31 | 161 |
hematopoietic multipotent progenitor cell | 5.15e-31 | 161 |
hematopoietic cell | 2.40e-29 | 177 |
myeloid leukocyte | 2.46e-27 | 72 |
myeloid cell | 1.21e-26 | 108 |
common myeloid progenitor | 1.21e-26 | 108 |
nongranular leukocyte | 4.36e-25 | 115 |
hematopoietic lineage restricted progenitor cell | 1.22e-24 | 120 |
classical monocyte | 3.80e-24 | 42 |
CD14-positive, CD16-negative classical monocyte | 3.80e-24 | 42 |
granulocyte monocyte progenitor cell | 4.34e-23 | 67 |
macrophage dendritic cell progenitor | 1.11e-22 | 61 |
defensive cell | 2.49e-22 | 48 |
phagocyte | 2.49e-22 | 48 |
monopoietic cell | 1.59e-21 | 59 |
monocyte | 1.59e-21 | 59 |
monoblast | 1.59e-21 | 59 |
promonocyte | 1.59e-21 | 59 |
myeloid lineage restricted progenitor cell | 4.20e-21 | 66 |
mesenchymal cell | 6.94e-08 | 354 |
motile cell | 1.26e-07 | 386 |
connective tissue cell | 7.80e-07 | 361 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 4.02e-25 | 98 |
blood island | 4.02e-25 | 98 |
hemolymphoid system | 3.63e-22 | 108 |
bone marrow | 1.31e-21 | 76 |
bone element | 4.18e-20 | 82 |
immune system | 1.88e-18 | 93 |
skeletal element | 1.48e-15 | 90 |
skeletal system | 2.50e-13 | 100 |
lateral plate mesoderm | 3.63e-07 | 203 |