FFCP PHASE1:Hg19::chr13:100634088..100634099,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(8 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=7546 | |EntrezGene=7546 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=12873 | |HGNC=12873 | ||
|TSSclassifier=strong | |||
|UniProt=O95409 | |UniProt=O95409 | ||
|association_with_transcript=62bp_to_ENST00000376335,NM_007129_5end | |association_with_transcript=62bp_to_ENST00000376335,NM_007129_5end | ||
|cluster_id=chr13:100634088..100634099,+ | |||
|coexpression_cluster_id=C1375 | |||
|description=CAGE_peak_5_at_ZIC2_5end | |description=CAGE_peak_5_at_ZIC2_5end | ||
|id=chr13:100634088..100634099,+ | |id=chr13:100634088..100634099,+ | ||
|ontology_enrichment_celltype=CL:0002322!6.42e-07!5;CL:0002319!8.42e-07!25 | |ontology_enrichment_celltype=CL:0002322!6.42e-07!5;CL:0002319!8.42e-07!25 | ||
|ontology_enrichment_celltype_v019=CL:0002322;1.04e-15;5!CL:0002321;4.00e-12;15!CL:0002575;8.30e-08;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0002322,7.83e-16,5;CL:0002575,8.65e-08,2 | |||
|ontology_enrichment_development_v019=UBERON:0006215;5.63e-11;3 | |||
|ontology_enrichment_disease=DOID:162!1.54e-34!235;DOID:14566!5.68e-33!239;DOID:0050687!1.11e-29!143;DOID:305!1.82e-21!106;DOID:0050686!6.18e-12!137;DOID:299!1.24e-09!25 | |ontology_enrichment_disease=DOID:162!1.54e-34!235;DOID:14566!5.68e-33!239;DOID:0050687!1.11e-29!143;DOID:305!1.82e-21!106;DOID:0050686!6.18e-12!137;DOID:299!1.24e-09!25 | ||
|ontology_enrichment_disease_v019=DOID:171;1.05e-13;10!DOID:3095;1.42e-11;22!DOID:2994;1.42e-11;22 | |||
|ontology_enrichment_disease_v019_2=DOID:171,7.09e-14,10;DOID:3095,1.25e-11,22;DOID:2994,1.25e-11,22;DOID:162,2.27e-11,235;DOID:14566,6.29e-11,239;DOID:0050687,9.68e-09,143 | |||
|ontology_enrichment_uberon=UBERON:0001017!1.16e-22!82;UBERON:0000073!1.18e-22!94;UBERON:0001016!1.18e-22!94;UBERON:0005743!9.31e-22!86;UBERON:0002346!1.25e-17!90;UBERON:0000955!6.95e-17!69;UBERON:0006238!6.95e-17!69;UBERON:0001049!1.51e-16!57;UBERON:0005068!1.51e-16!57;UBERON:0006241!1.51e-16!57;UBERON:0007135!1.51e-16!57;UBERON:0003075!5.78e-15!86;UBERON:0007284!5.78e-15!86;UBERON:0002616!1.15e-14!59;UBERON:0000924!1.24e-13!173;UBERON:0006601!1.24e-13!173;UBERON:0004121!1.09e-11!169;UBERON:0003076!1.98e-11!15;UBERON:0003057!1.98e-11!15;UBERON:0004732!9.21e-11!13;UBERON:0000033!5.59e-10!123;UBERON:0004733!7.89e-10!12;UBERON:0002028!7.89e-10!12;UBERON:0007277!7.89e-10!12;UBERON:0000956!8.52e-10!25;UBERON:0000203!8.52e-10!25;UBERON:0002619!2.24e-09!22;UBERON:0001950!2.41e-09!20;UBERON:0001893!4.02e-09!34;UBERON:0001869!6.06e-09!32;UBERON:0000153!8.10e-09!129;UBERON:0007811!8.10e-09!129;UBERON:0002780!1.12e-08!41;UBERON:0001890!1.12e-08!41;UBERON:0006240!1.12e-08!41;UBERON:0002791!1.23e-08!33;UBERON:0003080!2.65e-08!42;UBERON:0002020!6.75e-08!34;UBERON:0003528!6.75e-08!34;UBERON:0003056!1.18e-07!61;UBERON:0002037!1.70e-07!6;UBERON:0006215!1.70e-07!6;UBERON:0002680!2.37e-07!9;UBERON:0001895!2.37e-07!9;UBERON:0010092!2.37e-07!9 | |||
|ontology_enrichment_uberon_v019=UBERON:0004732;4.71e-14;13!UBERON:0002037;3.31e-13;6!UBERON:0002680;5.09e-12;9!UBERON:0001895;5.09e-12;9!UBERON:0004733;6.12e-12;12!UBERON:0002028;6.12e-12;12!UBERON:0002346;1.06e-11;4!UBERON:0000923;1.06e-11;4!UBERON:0010316;1.06e-11;4!UBERON:0005291;1.06e-11;4!UBERON:0002050;2.27e-09;5!UBERON:0005423;2.27e-09;5!UBERON:0003714;3.63e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004732,4.97e-14,13;UBERON:0002037,3.86e-13,6;UBERON:0006215,3.86e-13,6;UBERON:0002680,6.34e-12,9;UBERON:0001895,6.34e-12,9;UBERON:0010092,6.34e-12,9;UBERON:0004733,6.76e-12,12;UBERON:0002028,6.76e-12,12;UBERON:0007277,6.76e-12,12;UBERON:0003076,2.72e-09,15;UBERON:0003057,2.72e-09,15;UBERON:0003714,3.33e-07,2 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.10808952269109,0.612002073732759,1.56727360739044,0,0.547497700291537,0.502170558379211,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.294605907474837,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.661743720148475,0,0.351339142772504,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605429710579726,0.576175924479999,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.82960559194393,2.38553582978673,2.44007280025989,2.07322110030741,2.52320850875628,0.36497735907583,1.56449532329816,0,0,0,0,0.709840800239063,1.18009283054671,0.241011029883482,0.441175890929576,0.871517776369625,1.18635309555548,0.134831308160164,0.196221465125346,0,0,0,0,0,0,0,0,0,0.122988438543114,0.343135620597051,0,0,0,0,0,0,0,1.04337364477569,0.234817388471643,0,0,0,0.790204397959275,0.858486162094873,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.784917590417525,1.30788020649984,0.51336800074665,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.479249710983165,4.59447743336456,0,0,0,0,0,0,0,0,2.54094624222463,0,0.773288812777695,0.502548796003046,0,0,0,0,0,0,0,0,0.178428988797162,0,0,0,0,0,0,0,0,5.48243240895674,6.17658162859541,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.37354197227515,0.660075999364704,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.10115778085555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.640944426764839,3.84991942105343,0,0,0,0.426851060090485,0.797131363644112,0,0,0.635020748171649,0,0,0.684704037099577,0,0,1.35433422241283,0,0,0,0,1.84344458585075,1.3420566473545,0.500547425135725,0,1.9488432172667,0,2.43410110628385,0,0,0.748562161632879,0,0.970884173996107,0,0.568272293612826,0,0,0,0,0.140669416410513,0,1.15362711958732,0,0.19924798825107,0,0,0,0,0,0.179736702294654,1.07412704805365,0.511572370226872,0,0,0,0,0.185536196323703,0,0.260427761085233,0.0874599999961957,0,1.137934482855,0.254253650292766,0.709163045303809,0,0.583209226766509,0.520874984799877,0,0,19.8356257212208,6.19243855614858,7.09314285488514,0.658156191461918,0.762569244632931,0.83654246567162,0,0,0,0.0897576444097721,0,0,0,0,0,0,0,0.902382642468723,1.37243774022418,1.00692952185506,0.189753732724185,0,1.26598838716816,0.326465616318295,0,0,0,0,0,0,0.123563938946503,0,0.943615861729479,0,0.234264445725339,0.182454789215666,0.586993856796269,0.485560759068186,0,0,0,2.65383634439649,0.60129367765797,0.622129148383483,0.664653872707185,1.98595173525299,0.941798755221676,1.19472429772959,0.284609546029793,0.554698692052555,0.347119476670262,0,0.609414446062818,0,1.54787429224455,0.677294319023596,1.16942907337897,0.739039113478883,0,5.82490436163902,0,0.548167698587004,0.993573058514948,0.633107959558787,0,0.320635281006135,0,0.19980960958213,0.864542502924636,0.343609788497747,0,0.14405479798815,0.372757606696298,0.235694034616795,0.815425236441684,1.77824838730966,0.713987523454252,0.577901179803038,0,0,0,0,0,0,0,0,0,0,0,0,0,1.16495949527454,0,0,0,1.08270229666224,0,0,0.817220436669454,0.964518890790115,0.825236619583403,0.415440338029185,0,0,0.425246896606173,0,0,0,0.633602019116439,0.537862017998534,0.575745591958336,0,0,0,0,0,0,0,0,0.681552087141687,0,0,0,0,0.13223260174269,0.342173675768659,0,0,0,0,0,0,0,0.638341257770182,0,0,0,0,2.19875734750328,0.886068179966986,0.610131324509816,0.625954653532499,2.86704597845036,0.887432412294818,0.620964029413834,0,0.37494122388632,0,1.42732666772484,1.6468607378872,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.385239660814607,0,2.87093721161733,0.226705925512272,0.463044948647668,0,0.537266523244462,0,0,0.530067437837643,0.192914038270915,0,0.256241518587947,0.345430341731199,0.303859956177382,0.276516872303462,0,0,0,0.655219697692825,0.245772908753719,0.211312123358627,0,0,0,1.70254786070051,0,0,0,0,0,2.20172318598255,1.96577348745625,1.18812770967818,1.48802444071178,1.73510069962603,3.35186950783946,0,1.49837315502381,0,0,0,0.385375350578757,1.41696576325585,0.319267718114302,0.41023272848151,0.252071696221718,0.691572524642179,0.807378228159255,1.42769420259154,0.490738592505128,1.53360640352062,0.550285795565037,1.5018336599544,0,2.0710797781803,0.596748666348824,0,0.40341013740704,0,0.261906694481422,0.163771917510097,0.147856086217045,0.540300676947157,0.781078098613847,0.413373593002368,0.634158101939068,0.546974809018219,0,0,1.23109871051734,0.766574565837572,0,0,0,0,0,0,0,1.2914249265598,0.394636641377094,0,0,0,0.157115589916002,0.280272163313789,0,0,0.47775168788705,0.571812353413251,1.58013611732727,0.813689977576877,0.521574816907738,0,0,0,0,0,0,0,0,0,1.24082554265728,2.8666168169323,0.894843454382338,0,0.487671699929078,0,0,0,0,0.701818390386317,0,0,0.33883824611688,0.219881033490858,0,0,0,0,0,0,0.392616934229891,0.297046400327086,0.8453114551668,0,0,0,0,0.357107877211315,0,0,0,0,0,2.68211655728414,0.679914901909147,0,0,0,0,0,3.28032704571205,0,1.0135880080915,0,1.60330443159336,0,0.50141507858475,0,0,0.829169439458779,0.103432995861895,0,0,0,0,0,0,0.202117188958219,0,0,0,0,0,0.325613074443898,0,0,1.43720323370539,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.10808952269109,0.612002073732759,1.56727360739044,0,0.547497700291537,0.502170558379211,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.294605907474837,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.661743720148475,0,0.351339142772504,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605429710579726,0.576175924479999,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.82960559194393,2.38553582978673,2.44007280025989,2.07322110030741,2.52320850875628,0.36497735907583,1.56449532329816,0,0,0,0,0.709840800239063,1.18009283054671,0.241011029883482,0.441175890929576,0.871517776369625,1.18635309555548,0.134831308160164,0.196221465125346,0,0,0,0,0,0,0,0,0,0.122988438543114,0.343135620597051,0,0,0,0,0,0,0,1.04337364477569,0.234817388471643,0,0,0,0.790204397959275,0.858486162094873,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.784917590417525,1.30788020649984,0.51336800074665,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.479249710983165,4.59447743336456,0,0,0,0,0,0,0,0,2.54094624222463,0,0.773288812777695,0.502548796003046,0,0,0,0,0,0,0,0,0.178428988797162,0,0,0,0,0,0,0,0,5.48243240895674,6.17658162859541,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.37354197227515,0.660075999364704,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.10115778085555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.640944426764839,3.84991942105343,0,0,0,0.426851060090485,0.797131363644112,0,0,0.635020748171649,0,0,0.684704037099577,0,0,1.35433422241283,0,0,0,0,1.84344458585075,1.3420566473545,0.500547425135725,0,1.9488432172667,0,2.43410110628385,0,0,0.748562161632879,0,0.970884173996107,0,0.568272293612826,0,0,0,0,0.140669416410513,0,1.15362711958732,0,0.19924798825107,0,0,0,0,0,0.179736702294654,1.07412704805365,0.511572370226872,0,0,0,0,0.185536196323703,0,0.260427761085233,0.0874599999961957,0,1.137934482855,0.254253650292766,0.709163045303809,0,0.583209226766509,0.520874984799877,0,0,19.8356257212208,6.19243855614858,7.09314285488514,0.658156191461918,0.762569244632931,0.83654246567162,0,0,0,0.0897576444097721,0,0,0,0,0,0,0,0.902382642468723,1.37243774022418,1.00692952185506,0.189753732724185,0,1.26598838716816,0.326465616318295,0,0,0,0,0,0,0.123563938946503,0,0.943615861729479,0,0.234264445725339,0.182454789215666,0.586993856796269,0.485560759068186,0,0,0,2.65383634439649,0.60129367765797,0.622129148383483,0.664653872707185,1.98595173525299,0.941798755221676,1.19472429772959,0.284609546029793,0.554698692052555,0.347119476670262,0,0.609414446062818,0,1.54787429224455,0.677294319023596,1.16942907337897,0.739039113478883,0,5.82490436163902,0,0.548167698587004,0.993573058514948,0.633107959558787,0,0.320635281006135,0,0.19980960958213,0.864542502924636,0.343609788497747,0,0.14405479798815,0.372757606696298,0.235694034616795,0.815425236441684,1.77824838730966,0.713987523454252,0.577901179803038,0,0,0,0,0,0,0,0,0,0,0,0,0,1.16495949527454,0,0,0,1.08270229666224,0,0,0.817220436669454,0.964518890790115,0.825236619583403,0.415440338029185,0,0,0.425246896606173,0,0,0,0.633602019116439,0.537862017998534,0.575745591958336,0,0,0,0,0,0,0,0,0.681552087141687,0,0,0,0,0.13223260174269,0.342173675768659,0,0,0,0,0,0,0,0.638341257770182,0,0,0,0,2.19875734750328,0.886068179966986,0.610131324509816,0.625954653532499,2.86704597845036,0.887432412294818,0.620964029413834,0,0.37494122388632,0,1.42732666772484,1.6468607378872,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.385239660814607,0,2.87093721161733,0.226705925512272,0.463044948647668,0,0.537266523244462,0,0,0.530067437837643,0.192914038270915,0,0.256241518587947,0.345430341731199,0.303859956177382,0.276516872303462,0,0,0,0.655219697692825,0.245772908753719,0.211312123358627,0,0,0,1.70254786070051,0,0,0,0,0,2.20172318598255,1.96577348745625,1.18812770967818,1.48802444071178,1.73510069962603,3.35186950783946,0,1.49837315502381,0,0,0,0.385375350578757,1.41696576325585,0.319267718114302,0.41023272848151,0.252071696221718,0.691572524642179,0.807378228159255,1.42769420259154,0.490738592505128,1.53360640352062,0.550285795565037,1.5018336599544,0,2.0710797781803,0.596748666348824,0,0.40341013740704,0,0.261906694481422,0.163771917510097,0.147856086217045,0.540300676947157,0.781078098613847,0.413373593002368,0.634158101939068,0.546974809018219,0,0,1.23109871051734,0.766574565837572,0,0,0,0,0,0,0,1.2914249265598,0.394636641377094,0,0,0,0.157115589916002,0.280272163313789,0,0,0.47775168788705,0.571812353413251,1.58013611732727,0.813689977576877,0.521574816907738,0,0,0,0,0,0,0,0,0,1.24082554265728,2.8666168169323,0.894843454382338,0,0.487671699929078,0,0,0,0,0.701818390386317,0,0,0.33883824611688,0.219881033490858,0,0,0,0,0,0,0.392616934229891,0.297046400327086,0.8453114551668,0,0,0,0,0.357107877211315,0,0,0,0,0,2.68211655728414,0.679914901909147,0,0,0,0,0,3.28032704571205,0,1.0135880080915,0,1.60330443159336,0,0.50141507858475,0,0,0.829169439458779,0.103432995861895,0,0,0,0,0,0,0.202117188958219,0,0,0,0,0,0.325613074443898,0,0,1.43720323370539,0,0,0,0,0,0 | ||
|short_description=p5@ZIC2 | |short_description=p5@ZIC2 | ||
}} | }} |
Latest revision as of 07:57, 16 September 2015
Short description: | p5@ZIC2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_ZIC2_5end |
Coexpression cluster: | C1375_cerebellum_Pericytes_extraskeletal_neuroblastoma_teratocarcinoma_neuroectodermal_H9 |
Association with transcript: | 62bp_to_ENST00000376335, NM_007129_5end |
EntrezGene: | ZIC2 |
HGNC: | 12873 |
UniProt: | O95409 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic stem cell | 7.83e-16 | 5 |
central nervous system pericyte | 8.65e-08 | 2 |
Ontology term | p-value | n |
---|---|---|
segmental subdivision of nervous system | 4.97e-14 | 13 |
cerebellum | 3.86e-13 | 6 |
rhombic lip | 3.86e-13 | 6 |
regional part of metencephalon | 6.34e-12 | 9 |
metencephalon | 6.34e-12 | 9 |
future metencephalon | 6.34e-12 | 9 |
segmental subdivision of hindbrain | 6.76e-12 | 12 |
hindbrain | 6.76e-12 | 12 |
presumptive hindbrain | 6.76e-12 | 12 |
posterior neural tube | 2.72e-09 | 15 |
chordal neural plate | 2.72e-09 | 15 |
neural tissue | 3.33e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
neuroectodermal tumor | 7.09e-14 | 10 |
germ cell and embryonal cancer | 1.25e-11 | 22 |
germ cell cancer | 1.25e-11 | 22 |
cancer | 2.27e-11 | 235 |
disease of cellular proliferation | 6.29e-11 | 239 |
cell type cancer | 9.68e-09 | 143 |