FFCP PHASE1:Hg19::chr12:110434183..110434188,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=9815 | |EntrezGene=9815 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4273 | |HGNC=4273 | ||
|TSSclassifier=strong | |||
|UniProt=F8W7V0,F8WAK2,Q14161,Q6FI58 | |UniProt=F8W7V0,F8WAK2,Q14161,Q6FI58 | ||
|association_with_transcript=5bp_to_,-5bp_to_ENST00000338373,ENST00000343646,ENST00000354574,ENST00000356259,ENST00000360185,ENST00000551455,ENST00000553118,NM_001135213,NM_001135214,NM_014776,NM_057169,NM_057170,NM_139201,uc001tpq.2,uc001tps.2,uc001tpt.2,uc001tpu.2,uc001tpv.2,uc001tpw.2,uc010sxu.1,uc010sxv.1_5end | |association_with_transcript=5bp_to_,-5bp_to_ENST00000338373,ENST00000343646,ENST00000354574,ENST00000356259,ENST00000360185,ENST00000551455,ENST00000553118,NM_001135213,NM_001135214,NM_014776,NM_057169,NM_057170,NM_139201,uc001tpq.2,uc001tps.2,uc001tpt.2,uc001tpu.2,uc001tpv.2,uc001tpw.2,uc010sxu.1,uc010sxv.1_5end | ||
|cluster_id=chr12:110434183..110434188,- | |||
|description=CAGE_peak_6_at_GIT2_5end | |description=CAGE_peak_6_at_GIT2_5end | ||
|id=chr12:110434183..110434188,- | |id=chr12:110434183..110434188,- | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
| | |ontology_enrichment_celltype_v019= | ||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_uberon=UBERON:0002619;7.35e-11;22!UBERON:0001950;6.29e-10;20!UBERON:0000956;6.47e-10;25!UBERON:0000203;6.47e-10;25!UBERON:0001893;9.82e-10;34!UBERON:0001869;1.82e-09;32!UBERON:0002791;2.75e-09;32!UBERON:0003528;1.19e-08;34!UBERON:0002020;1.19e-08;34!UBERON:0002780;2.39e-08;41!UBERON:0001890;2.39e-08;41!UBERON:0000073;1.56e-07;53!UBERON:0002616;1.56e-07;53 | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!1.01e-11!57;UBERON:0005068!1.01e-11!57;UBERON:0006241!1.01e-11!57;UBERON:0007135!1.01e-11!57;UBERON:0002616!9.10e-10!59;UBERON:0003075!1.54e-09!86;UBERON:0007284!1.54e-09!86;UBERON:0007023!1.79e-09!115;UBERON:0002346!1.09e-08!90;UBERON:0001893!1.54e-08!34;UBERON:0003080!1.99e-08!42;UBERON:0002791!4.50e-08!33;UBERON:0001869!5.05e-08!32;UBERON:0002780!5.75e-08!41;UBERON:0001890!5.75e-08!41;UBERON:0006240!5.75e-08!41;UBERON:0002619!6.83e-08!22;UBERON:0001017!9.69e-08!82;UBERON:0002020!1.41e-07!34;UBERON:0003528!1.41e-07!34;UBERON:0000955!3.84e-07!69;UBERON:0006238!3.84e-07!69;UBERON:0000956!4.05e-07!25;UBERON:0000203!4.05e-07!25;UBERON:0001950!4.99e-07!20;UBERON:0005743!9.70e-07!86 | |||
|ontology_enrichment_uberon_v019=UBERON:0002619;7.35e-11;22!UBERON:0001950;6.29e-10;20!UBERON:0000956;6.47e-10;25!UBERON:0000203;6.47e-10;25!UBERON:0001893;9.82e-10;34!UBERON:0001869;1.82e-09;32!UBERON:0002791;2.75e-09;32!UBERON:0003528;1.19e-08;34!UBERON:0002020;1.19e-08;34!UBERON:0002780;2.39e-08;41!UBERON:0001890;2.39e-08;41!UBERON:0000073;1.56e-07;53!UBERON:0002616;1.56e-07;53 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001049,4.84e-15,56;UBERON:0005068,4.84e-15,56;UBERON:0006241,4.84e-15,56;UBERON:0007135,4.84e-15,56;UBERON:0000073,1.86e-13,53;UBERON:0002616,1.86e-13,53;UBERON:0007023,1.15e-12,114;UBERON:0001893,3.25e-12,34;UBERON:0002619,5.19e-12,22;UBERON:0002780,1.68e-11,41;UBERON:0001890,1.68e-11,41;UBERON:0003080,1.68e-11,41;UBERON:0006240,1.68e-11,41;UBERON:0001869,2.01e-11,32;UBERON:0000956,6.46e-11,25;UBERON:0000203,6.46e-11,25;UBERON:0002791,6.61e-11,32;UBERON:0003528,7.20e-11,34;UBERON:0002020,7.20e-11,34;UBERON:0001950,1.14e-10,20;UBERON:0001017,1.81e-10,81;UBERON:0003075,5.05e-10,82;UBERON:0007284,5.05e-10,82;UBERON:0001016,1.02e-09,89;UBERON:0000955,5.52e-09,68;UBERON:0006238,5.52e-09,68;UBERON:0002346,6.07e-09,86;UBERON:0010314,2.08e-08,132;UBERON:0010371,9.62e-07,104 | |||
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| ||
|short_description=p6@GIT2 | |short_description=p6@GIT2 | ||
}} | }} |
Latest revision as of 07:43, 16 September 2015
Short description: | p6@GIT2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_GIT2_5end |
Coexpression cluster: | NA |
Association with transcript: | 5bp_to_, -5bp_to_ENST00000338373, ENST00000343646, ENST00000354574, ENST00000356259, ENST00000360185, ENST00000551455, ENST00000553118, NM_001135213, NM_001135214, NM_014776, NM_057169, NM_057170, NM_139201, uc001tpq.2, uc001tps.2, uc001tpt.2, uc001tpu.2, uc001tpv.2, uc001tpw.2, uc010sxu.1, uc010sxv.1_5end |
EntrezGene: | GIT2 |
HGNC: | 4273 |
UniProt: | F8W7V0F8WAK2Q14161Q6FI58 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neural tube | 4.84e-15 | 56 |
neural rod | 4.84e-15 | 56 |
future spinal cord | 4.84e-15 | 56 |
neural keel | 4.84e-15 | 56 |
regional part of nervous system | 1.86e-13 | 53 |
regional part of brain | 1.86e-13 | 53 |
adult organism | 1.15e-12 | 114 |
telencephalon | 3.25e-12 | 34 |
regional part of cerebral cortex | 5.19e-12 | 22 |
regional part of forebrain | 1.68e-11 | 41 |
forebrain | 1.68e-11 | 41 |
anterior neural tube | 1.68e-11 | 41 |
future forebrain | 1.68e-11 | 41 |
cerebral hemisphere | 2.01e-11 | 32 |
cerebral cortex | 6.46e-11 | 25 |
pallium | 6.46e-11 | 25 |
regional part of telencephalon | 6.61e-11 | 32 |
brain grey matter | 7.20e-11 | 34 |
gray matter | 7.20e-11 | 34 |
neocortex | 1.14e-10 | 20 |
central nervous system | 1.81e-10 | 81 |
neural plate | 5.05e-10 | 82 |
presumptive neural plate | 5.05e-10 | 82 |
nervous system | 1.02e-09 | 89 |
brain | 5.52e-09 | 68 |
future brain | 5.52e-09 | 68 |
neurectoderm | 6.07e-09 | 86 |
structure with developmental contribution from neural crest | 2.08e-08 | 132 |
ecto-epithelium | 9.62e-07 | 104 |