FFCP PHASE1:Hg19::chr8:128902571..128902583,+: Difference between revisions
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(Created page with "{{FFCP
|id=chr8:128902571..128902583,+
|short_description=p15@PVT1
|description=CAGE_peak_15_at_PVT1_5end
|association_with_transcript=-251bp_to_uc003ysl.2_5end
|EntrezGe...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=5820 | |EntrezGene=5820 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC=9709 | |HGNC=9709 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-251bp_to_uc003ysl.2_5end | |||
|cluster_id=chr8:128902571..128902583,+ | |||
|coexpression_cluster_id=C415 | |||
|description=CAGE_peak_15_at_PVT1_5end | |||
|id=chr8:128902571..128902583,+ | |||
|ontology_enrichment_celltype=CL:0002590!1.28e-14!3;CL:0002549!1.46e-10!2;CL:0000128!1.95e-10!7;CL:0000126!1.95e-10!7;CL:0000127!1.95e-10!7;CL:0002453!1.95e-10!7;CL:0002575!2.22e-10!2;CL:0000064!3.40e-07!3;CL:0005012!3.40e-07!3;CL:0000067!3.40e-07!3;CL:0002304!3.40e-07!3;CL:0000708!3.40e-07!3;CL:0002605!9.89e-07!3 | |||
|ontology_enrichment_celltype_v019=CL:0002590;1.52e-44;3!CL:0002549;9.07e-18;2!CL:0002575;9.07e-18;2!CL:0000669;1.44e-09;4!CL:0002149;8.48e-07;6!CL:0002255;8.48e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0002590,1.53e-44,3;CL:0002549,6.48e-18,2;CL:0002575,1.27e-17,2;CL:0000669,1.70e-09,4;CL:0002149,8.48e-07,6;CL:0002255,8.48e-07,6 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:3001;8.48e-07;6 | |||
|ontology_enrichment_disease_v019_2=DOID:3001,8.48e-07,6 | |||
|ontology_enrichment_uberon=UBERON:0002200!7.22e-33!11;UBERON:0006876!7.22e-33!11;UBERON:0005284!2.01e-23!5;UBERON:0002203!1.31e-12!6;UBERON:0001768!1.31e-12!6;UBERON:0000488!4.43e-11!4;UBERON:0003947!1.46e-10!2;UBERON:0005629!1.46e-10!2;UBERON:0005358!1.46e-10!2;UBERON:0001886!1.46e-10!2;UBERON:0004086!1.46e-10!2;UBERON:0005282!1.46e-10!2;UBERON:0005281!1.46e-10!2;UBERON:0002300!2.67e-07!3;UBERON:0003210!3.40e-07!3;UBERON:0001778!3.40e-07!3;UBERON:0001775!3.40e-07!3 | |||
|ontology_enrichment_uberon_v019=UBERON:0005284;2.01e-59;5!UBERON:0006876;1.40e-27;11!UBERON:0005629;9.07e-18;2!UBERON:0005358;9.07e-18;2!UBERON:0001886;9.07e-18;2!UBERON:0004086;9.07e-18;2!UBERON:0005282;9.07e-18;2!UBERON:0005281;9.07e-18;2!UBERON:0002346;1.12e-09;4!UBERON:0000923;1.12e-09;4!UBERON:0010316;1.12e-09;4!UBERON:0005291;1.12e-09;4!UBERON:0002050;5.35e-08;5!UBERON:0005423;5.35e-08;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005284,1.35e-59,5;UBERON:0006876,1.17e-27,11;UBERON:0005629,6.48e-18,2;UBERON:0005358,6.48e-18,2;UBERON:0001886,6.48e-18,2;UBERON:0004086,6.48e-18,2;UBERON:0005282,6.48e-18,2;UBERON:0005281,6.48e-18,2 | |||
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|short_description=p15@PVT1 | |||
}} | }} |
Latest revision as of 07:15, 16 September 2015
Short description: | p15@PVT1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_15_at_PVT1_5end |
Coexpression cluster: | C415_neuroectodermal_eye_retina_thyroid_acute_adult_lymphoma |
Association with transcript: | -251bp_to_uc003ysl.2_5end |
EntrezGene: | PVT1 |
HGNC: | 9709 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
smooth muscle cell of the brain vasculature | 1.53e-44 | 3 |
fibroblast of choroid plexus | 6.48e-18 | 2 |
central nervous system pericyte | 1.27e-17 | 2 |
pericyte cell | 1.70e-09 | 4 |
epithelial cell of uterus | 8.48e-07 | 6 |
stromal cell of endometrium | 8.48e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
brain vasculature | 1.35e-59 | 5 |
vasculature of organ | 1.17e-27 | 11 |
vascular plexus | 6.48e-18 | 2 |
ventricle of nervous system | 6.48e-18 | 2 |
choroid plexus | 6.48e-18 | 2 |
brain ventricle | 6.48e-18 | 2 |
ventricular system of brain | 6.48e-18 | 2 |
ventricular system of central nervous system | 6.48e-18 | 2 |
Ontology term | p-value | n |
---|---|---|
female reproductive endometrioid cancer | 8.48e-07 | 6 |