FFCP PHASE1:Hg19::chr2:240322685..240322738,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr2:240322685..240322738,- to FFCP PHASE1:Hg19::chr2:240322685..240322738,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=9759 | |EntrezGene=9759 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=14063 | |HGNC=14063 | ||
|TSSclassifier=strong | |||
|UniProt=Q86YH7,F5H0B1 | |UniProt=Q86YH7,F5H0B1 | ||
|association_with_transcript=0bp_to_ENST00000456922,ENST00000544989_5end | |||
|cluster_id=chr2:240322685..240322738,- | |||
|description=CAGE_peak_1_at_HDAC4_5end | |||
|id=chr2:240322685..240322738,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!1.38e-24!115;UBERON:0001049!1.43e-14!57;UBERON:0005068!1.43e-14!57;UBERON:0006241!1.43e-14!57;UBERON:0007135!1.43e-14!57;UBERON:0001017!2.29e-14!82;UBERON:0005743!1.35e-13!86;UBERON:0000955!3.59e-13!69;UBERON:0006238!3.59e-13!69;UBERON:0002616!5.71e-13!59;UBERON:0000073!1.33e-11!94;UBERON:0001016!1.33e-11!94;UBERON:0002780!2.39e-11!41;UBERON:0001890!2.39e-11!41;UBERON:0006240!2.39e-11!41;UBERON:0003080!3.27e-11!42;UBERON:0002346!4.15e-11!90;UBERON:0003075!8.70e-11!86;UBERON:0007284!8.70e-11!86;UBERON:0001893!4.03e-10!34;UBERON:0002020!8.39e-10!34;UBERON:0003528!8.39e-10!34;UBERON:0002791!1.04e-09!33;UBERON:0001869!3.32e-09!32;UBERON:0000956!1.23e-07!25;UBERON:0000203!1.23e-07!25;UBERON:0003056!1.29e-07!61;UBERON:0001950!2.79e-07!20;UBERON:0000924!4.49e-07!173;UBERON:0006601!4.49e-07!173;UBERON:0002619!6.13e-07!22;UBERON:0000153!6.18e-07!129;UBERON:0007811!6.18e-07!129;UBERON:0004121!9.10e-07!169 | |||
|ontology_enrichment_uberon_v019=UBERON:0000073;5.72e-09;53!UBERON:0002616;5.72e-09;53!UBERON:0001893;6.36e-09;34!UBERON:0002780;9.05e-09;41!UBERON:0001890;9.05e-09;41!UBERON:0002791;1.58e-08;32!UBERON:0003528;1.63e-08;34!UBERON:0002020;1.63e-08;34!UBERON:0001869;1.93e-08;32!UBERON:0000956;1.17e-07;25!UBERON:0000203;1.17e-07;25!UBERON:0001950;3.43e-07;20!UBERON:0000922;4.95e-07;49!UBERON:0002619;6.41e-07;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,3.33e-24,114;UBERON:0001049,1.06e-14,56;UBERON:0005068,1.06e-14,56;UBERON:0006241,1.06e-14,56;UBERON:0007135,1.06e-14,56;UBERON:0001017,1.95e-14,81;UBERON:0000073,1.11e-13,53;UBERON:0002616,1.11e-13,53;UBERON:0000955,2.97e-13,68;UBERON:0006238,2.97e-13,68;UBERON:0001016,2.95e-12,89;UBERON:0002780,2.38e-11,41;UBERON:0001890,2.38e-11,41;UBERON:0003080,2.38e-11,41;UBERON:0006240,2.38e-11,41;UBERON:0001893,4.03e-10,34;UBERON:0002346,5.02e-10,86;UBERON:0011216,8.07e-10,223;UBERON:0003528,8.39e-10,34;UBERON:0002020,8.39e-10,34;UBERON:0003075,1.05e-09,82;UBERON:0007284,1.05e-09,82;UBERON:0002791,2.72e-09,32;UBERON:0001869,3.32e-09,32;UBERON:0000956,1.23e-07,25;UBERON:0000203,1.23e-07,25;UBERON:0010371,1.69e-07,104;UBERON:0001950,2.79e-07,20;UBERON:0003056,4.02e-07,61;UBERON:0002619,6.13e-07,22 | |||
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| ||
|short_description=p1@HDAC4 | |||
}} | }} |
Latest revision as of 06:59, 16 September 2015
Short description: | p1@HDAC4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_HDAC4_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000456922, ENST00000544989_5end |
EntrezGene: | HDAC4 |
HGNC: | 14063 |
UniProt: | Q86YH7F5H0B1 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
adult organism | 3.33e-24 | 114 |
neural tube | 1.06e-14 | 56 |
neural rod | 1.06e-14 | 56 |
future spinal cord | 1.06e-14 | 56 |
neural keel | 1.06e-14 | 56 |
central nervous system | 1.95e-14 | 81 |
regional part of nervous system | 1.11e-13 | 53 |
regional part of brain | 1.11e-13 | 53 |
brain | 2.97e-13 | 68 |
future brain | 2.97e-13 | 68 |
nervous system | 2.95e-12 | 89 |
regional part of forebrain | 2.38e-11 | 41 |
forebrain | 2.38e-11 | 41 |
anterior neural tube | 2.38e-11 | 41 |
future forebrain | 2.38e-11 | 41 |
telencephalon | 4.03e-10 | 34 |
neurectoderm | 5.02e-10 | 86 |
organ system subdivision | 8.07e-10 | 223 |
brain grey matter | 8.39e-10 | 34 |
gray matter | 8.39e-10 | 34 |
neural plate | 1.05e-09 | 82 |
presumptive neural plate | 1.05e-09 | 82 |
regional part of telencephalon | 2.72e-09 | 32 |
cerebral hemisphere | 3.32e-09 | 32 |
cerebral cortex | 1.23e-07 | 25 |
pallium | 1.23e-07 | 25 |
ecto-epithelium | 1.69e-07 | 104 |
neocortex | 2.79e-07 | 20 |
pre-chordal neural plate | 4.02e-07 | 61 |
regional part of cerebral cortex | 6.13e-07 | 22 |