FFCP PHASE1:Hg19::chr3:156807884..156807897,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(5 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=100498859 | |EntrezGene=100498859 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC= | |HGNC= | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=214bp_to_ENST00000467995,ENST00000471719,ENST00000474477,NR_034008_5end | |association_with_transcript=214bp_to_ENST00000467995,ENST00000471719,ENST00000474477,NR_034008_5end | ||
|cluster_id=chr3:156807884..156807897,+ | |||
|coexpression_cluster_id=C7 | |coexpression_cluster_id=C7 | ||
|description=CAGE_peak_4_at_LOC100498859_5end | |description=CAGE_peak_4_at_LOC100498859_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0002057!2.54e-60!42;CL:0000860!2.28e-55!45;CL:0000557!2.18e-43!71;CL:0000738!8.59e-43!140;CL:0000766!8.23e-42!76;CL:0002009!9.06e-40!65;CL:0000763!8.51e-38!112;CL:0000049!8.51e-38!112;CL:0000988!9.61e-38!182;CL:0000839!1.71e-37!70;CL:0000037!4.92e-37!172;CL:0000566!4.92e-37!172;CL:0002194!8.86e-37!63;CL:0000576!8.86e-37!63;CL:0000040!8.86e-37!63;CL:0000559!8.86e-37!63;CL:0002032!3.10e-34!165;CL:0000837!3.10e-34!165;CL:0002031!9.34e-33!124;CL:0002087!2.09e-31!119;CL:0000134!2.30e-14!358;CL:0002320!1.17e-13!365;CL:0000219!1.05e-11!390;CL:0000080!1.45e-09!6;CL:0002393!1.98e-09!9;CL:0002397!1.98e-09!9;CL:0000453!3.91e-09!5;CL:0000048!7.65e-09!430;CL:0000723!1.96e-08!436;CL:0000034!2.27e-08!444;CL:0000451!4.79e-07!10;CL:0000767!6.17e-07!3 | |ontology_enrichment_celltype=CL:0002057!2.54e-60!42;CL:0000860!2.28e-55!45;CL:0000557!2.18e-43!71;CL:0000738!8.59e-43!140;CL:0000766!8.23e-42!76;CL:0002009!9.06e-40!65;CL:0000763!8.51e-38!112;CL:0000049!8.51e-38!112;CL:0000988!9.61e-38!182;CL:0000839!1.71e-37!70;CL:0000037!4.92e-37!172;CL:0000566!4.92e-37!172;CL:0002194!8.86e-37!63;CL:0000576!8.86e-37!63;CL:0000040!8.86e-37!63;CL:0000559!8.86e-37!63;CL:0002032!3.10e-34!165;CL:0000837!3.10e-34!165;CL:0002031!9.34e-33!124;CL:0002087!2.09e-31!119;CL:0000134!2.30e-14!358;CL:0002320!1.17e-13!365;CL:0000219!1.05e-11!390;CL:0000080!1.45e-09!6;CL:0002393!1.98e-09!9;CL:0002397!1.98e-09!9;CL:0000453!3.91e-09!5;CL:0000048!7.65e-09!430;CL:0000723!1.96e-08!436;CL:0000034!2.27e-08!444;CL:0000451!4.79e-07!10;CL:0000767!6.17e-07!3 | ||
|ontology_enrichment_celltype_v019=CL:0000860;5.10e-97;33!CL:0002057;5.10e-97;33!CL:0000473;9.14e-68;39!CL:0000234;9.14e-68;39!CL:0000576;1.38e-66;48!CL:0000766;2.72e-42;69!CL:0002393;2.36e-25;6!CL:0002397;2.36e-25;6!CL:0000763;3.89e-22;100!CL:0002087;2.51e-15;104!CL:0000767;1.09e-14;3!CL:0000738;3.02e-13;136!CL:0001014;3.34e-10;2!CL:0001016;3.34e-10;2!CL:0000094;2.98e-09;8!CL:0000988;5.28e-08;177!CL:0000081;9.80e-07;11 | |ontology_enrichment_celltype_v019=CL:0000860;5.10e-97;33!CL:0002057;5.10e-97;33!CL:0000473;9.14e-68;39!CL:0000234;9.14e-68;39!CL:0000576;1.38e-66;48!CL:0000766;2.72e-42;69!CL:0002393;2.36e-25;6!CL:0002397;2.36e-25;6!CL:0000763;3.89e-22;100!CL:0002087;2.51e-15;104!CL:0000767;1.09e-14;3!CL:0000738;3.02e-13;136!CL:0001014;3.34e-10;2!CL:0001016;3.34e-10;2!CL:0000094;2.98e-09;8!CL:0000988;5.28e-08;177!CL:0000081;9.80e-07;11 | ||
|ontology_enrichment_celltype_v019_2=CL:0000860,3.94e-122,42;CL:0002057,3.94e-122,42;CL:0000473,6.50e-106,48;CL:0000234,6.50e-106,48;CL:0000557,2.77e-91,67;CL:0002009,1.43e-90,61;CL:0000766,1.92e-89,72;CL:0002194,3.35e-83,59;CL:0000576,3.35e-83,59;CL:0000040,3.35e-83,59;CL:0000559,3.35e-83,59;CL:0000839,3.68e-78,66;CL:0000763,3.40e-67,108;CL:0000049,3.40e-67,108;CL:0000738,2.08e-54,136;CL:0002031,4.06e-45,120;CL:0000037,9.95e-45,168;CL:0002032,1.84e-42,161;CL:0000837,1.84e-42,161;CL:0000988,4.89e-42,177;CL:0002087,8.58e-42,115;CL:0000134,7.12e-18,354;CL:0002320,2.34e-17,361;CL:0002393,9.54e-17,9;CL:0002397,9.54e-17,9;CL:0000219,1.54e-15,386;CL:0000767,1.11e-14,3;CL:0000048,2.59e-13,427;CL:0000723,5.25e-13,433;CL:0000034,1.31e-12,441;CL:0001014,3.35e-10,2;CL:0001016,3.35e-10,2;CL:0000094,3.05e-09,8;CL:0000081,9.96e-07,11 | |||
|ontology_enrichment_development_v019=CL:0002057;1.58e-89;42!CL:0000049;6.68e-19;108 | |ontology_enrichment_development_v019=CL:0002057;1.58e-89;42!CL:0000049;6.68e-19;108 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!7.07e-39!102;UBERON:0003061!7.07e-39!102;UBERON:0002371!7.79e-37!80;UBERON:0002193!7.16e-34!112;UBERON:0001474!3.11e-33!86;UBERON:0002405!1.20e-29!115;UBERON:0004765!3.94e-26!101;UBERON:0001434!3.94e-26!101;UBERON:0003081!1.83e-18!216;UBERON:0002384!1.06e-12!375;UBERON:0002204!7.66e-12!167 | |ontology_enrichment_uberon=UBERON:0002390!7.07e-39!102;UBERON:0003061!7.07e-39!102;UBERON:0002371!7.79e-37!80;UBERON:0002193!7.16e-34!112;UBERON:0001474!3.11e-33!86;UBERON:0002405!1.20e-29!115;UBERON:0004765!3.94e-26!101;UBERON:0001434!3.94e-26!101;UBERON:0003081!1.83e-18!216;UBERON:0002384!1.06e-12!375;UBERON:0002204!7.66e-12!167 | ||
|ontology_enrichment_uberon_v019= | |ontology_enrichment_uberon_v019= | ||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,1.13e-79,76;UBERON:0001474,2.49e-73,82;UBERON:0004765,3.58e-66,90;UBERON:0002405,8.41e-64,93;UBERON:0002390,1.77e-63,98;UBERON:0003061,1.77e-63,98;UBERON:0001434,8.12e-59,100;UBERON:0002193,6.68e-57,108;UBERON:0002204,4.28e-32,167;UBERON:0003081,3.31e-28,203;UBERON:0002384,1.18e-16,371;UBERON:0000926,3.39e-15,315;UBERON:0004120,3.39e-15,315;UBERON:0006603,3.39e-15,315 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0821005894499457,0.157421562627358,7.08055698328027,5.37361157336098,14.8623478383433,0,0,0,0,0,0,6.09394949385065,2.60707781711184,6.94434786290726,0,0,0,1.01778767145695,2.26725566213286,1.4555043671269,1.85943229524548,2.87817521615278,6.81354015969228,4.60307827715441,12.0395532068677,23.6482229888585,2.75796544589295,8.39130088658974,9.47985406160392,2.07066573496865,2.18324920046277,4.26974620445661,3.36692281607993,7.38136762275015,4.47535988059329,3.62836430205388,8.57693727773017,10.2293940127847,2.03146467040009,0.56738522469114,3.11411124497787,6.02996796616184,13.037072960505,15.2032191293582,1.81619850790011,6.2607198117886,4.43047342417238,1.47878700418359,1.4882300997553,1.04829322754188,0.22465726229299,0.150176892841506,0,0.285012743741249,0,0,0,0,0,0,0,0,0,0,0.569212969109448,0.587237189370939,0.382273228125229,0,0.560508562981536,0,0,0,0.205601498999509,0,0,0,0,0.111410456885174,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.253019692019503,0,0,0,0,0,0,0,0,0.201606743224732,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.238490624305342,1.14398982156026,0,0.198762407366705,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.31780417436063,0,0,0,0,0,0,0,0,0,0,0.311211035399766,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179389635688862,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.738155454624648,0,0,0,0,0,0.590789906681404,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207328115540772,1.58531948758658,0.6312121671319,0,0,0,0,0,0,0,0,0,0,0.129271715757778,0,0,0,0,0,0,0,0.142977993658148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.788123040807709,0.431255149719035,0.128343036279748,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206768026122887,1.07857100409308,0.106727557803444,0.303127571446259,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120859449591622,0,0,0,0,0,0,0,0,0,0.105551628892876,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.382838137483752,0.2023155617111,0,0,0,0,0,0.869932992075073,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.288666338176536,0,0,0.188287601553558,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.735120647943095,0,0,0,0,0,0,0.211673582723883,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19538809540204,0,0,0,0,0,0,0,0,0.222886768554957,0,0,2.07875276582847,0,0,0,0,0,0,0,0,0,0,0.246169610922139,0,0.0898683511473268,0,0,0,0,0,0,0,0,0,0,0,0,0.254253650292766,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.31900115973192,0,0,0,0,0,0,0.19606253431774,0.167821586975843,0,0,0,0,0,0,0,0,0,0.889563386041866,0.617819694732514,0.626531697032732,0,0,0,0,0,0,0.394584402849391,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.27746588066972,0,0.262887354279314,0.558564802544508,0.229160424011684,0,0.599037001496973,0.858452096273142,0.669514372325618,0.806201669840715,0,0,0,0,0,0,0,0,0,0,0,0,6.52424285499351,6.1904156364636,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106787412567695,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0620964029413835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.15543720058278,0,0,0,0,0,0,0,0.150257608997218,0,0,0.727394636810238,0,0,0.398095888698616,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.389720617678777,0.398594520940089,0.654261577023377,0,0,0,0,0,0,0,0,0,0.622077260032973,0,0.107824811396682,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.383287282918786,0,0.336283722218824,0,0,0,0,0.342976018874837,0,0.131545547125698,0,0,0,0,0,0,0,0,0.0714765441766563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.301925687133347,0.0771741581079447,0,0,0,0,0,0,0,0,0,0.0644578879735772,0.199882311849858,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0620747142958579,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0821005894499457,0.157421562627358,7.08055698328027,5.37361157336098,14.8623478383433,0,0,0,0,0,0,6.09394949385065,2.60707781711184,6.94434786290726,0,0,0,1.01778767145695,2.26725566213286,1.4555043671269,1.85943229524548,2.87817521615278,6.81354015969228,4.60307827715441,12.0395532068677,23.6482229888585,2.75796544589295,8.39130088658974,9.47985406160392,2.07066573496865,2.18324920046277,4.26974620445661,3.36692281607993,7.38136762275015,4.47535988059329,3.62836430205388,8.57693727773017,10.2293940127847,2.03146467040009,0.56738522469114,3.11411124497787,6.02996796616184,13.037072960505,15.2032191293582,1.81619850790011,6.2607198117886,4.43047342417238,1.47878700418359,1.4882300997553,1.04829322754188,0.22465726229299,0.150176892841506,0,0.285012743741249,0,0,0,0,0,0,0,0,0,0,0.569212969109448,0.587237189370939,0.382273228125229,0,0.560508562981536,0,0,0,0.205601498999509,0,0,0,0,0.111410456885174,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.253019692019503,0,0,0,0,0,0,0,0,0.201606743224732,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.238490624305342,1.14398982156026,0,0.198762407366705,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.31780417436063,0,0,0,0,0,0,0,0,0,0,0.311211035399766,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179389635688862,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.738155454624648,0,0,0,0,0,0.590789906681404,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207328115540772,1.58531948758658,0.6312121671319,0,0,0,0,0,0,0,0,0,0,0.129271715757778,0,0,0,0,0,0,0,0.142977993658148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.788123040807709,0.431255149719035,0.128343036279748,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206768026122887,1.07857100409308,0.106727557803444,0.303127571446259,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120859449591622,0,0,0,0,0,0,0,0,0,0.105551628892876,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.382838137483752,0.2023155617111,0,0,0,0,0,0.869932992075073,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.288666338176536,0,0,0.188287601553558,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.735120647943095,0,0,0,0,0,0,0.211673582723883,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19538809540204,0,0,0,0,0,0,0,0,0.222886768554957,0,0,2.07875276582847,0,0,0,0,0,0,0,0,0,0,0.246169610922139,0,0.0898683511473268,0,0,0,0,0,0,0,0,0,0,0,0,0.254253650292766,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.31900115973192,0,0,0,0,0,0,0.19606253431774,0.167821586975843,0,0,0,0,0,0,0,0,0,0.889563386041866,0.617819694732514,0.626531697032732,0,0,0,0,0,0,0.394584402849391,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.27746588066972,0,0.262887354279314,0.558564802544508,0.229160424011684,0,0.599037001496973,0.858452096273142,0.669514372325618,0.806201669840715,0,0,0,0,0,0,0,0,0,0,0,0,6.52424285499351,6.1904156364636,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106787412567695,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0620964029413835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.15543720058278,0,0,0,0,0,0,0,0.150257608997218,0,0,0.727394636810238,0,0,0.398095888698616,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.389720617678777,0.398594520940089,0.654261577023377,0,0,0,0,0,0,0,0,0,0.622077260032973,0,0.107824811396682,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.383287282918786,0,0.336283722218824,0,0,0,0,0.342976018874837,0,0.131545547125698,0,0,0,0,0,0,0,0,0.0714765441766563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.301925687133347,0.0771741581079447,0,0,0,0,0,0,0,0,0,0.0644578879735772,0.199882311849858,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0620747142958579,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p4@LOC100498859 | |short_description=p4@LOC100498859 | ||
}} | }} |
Latest revision as of 06:58, 16 September 2015
Short description: | p4@LOC100498859 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_LOC100498859_5end |
Coexpression cluster: | C7_CD14_Eosinophils_Neutrophils_Smooth_Basophils_Macrophage_Mast |
Association with transcript: | 214bp_to_ENST00000467995, ENST00000471719, ENST00000474477, NR_034008_5end |
EntrezGene: | LOC100498859 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
bone marrow | 1.13e-79 | 76 |
bone element | 2.49e-73 | 82 |
skeletal element | 3.58e-66 | 90 |
immune system | 8.41e-64 | 93 |
hematopoietic system | 1.77e-63 | 98 |
blood island | 1.77e-63 | 98 |
skeletal system | 8.12e-59 | 100 |
hemolymphoid system | 6.68e-57 | 108 |
musculoskeletal system | 4.28e-32 | 167 |
lateral plate mesoderm | 3.31e-28 | 203 |
connective tissue | 1.18e-16 | 371 |
mesoderm | 3.39e-15 | 315 |
mesoderm-derived structure | 3.39e-15 | 315 |
presumptive mesoderm | 3.39e-15 | 315 |