FFCP PHASE1:Hg19::chr2:109300765..109300788,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3987 | |EntrezGene=3987 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=6616 | |HGNC=6616 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-259bp_to_AK025661_5end | |association_with_transcript=-259bp_to_AK025661_5end | ||
|cluster_id=chr2:109300765..109300788,+ | |||
|description=CAGE_peak_16_at_LIMS1_5end | |description=CAGE_peak_16_at_LIMS1_5end | ||
|id=chr2:109300765..109300788,+ | |id=chr2:109300765..109300788,+ | ||
|ontology_enrichment_celltype=CL:0002194!6.54e-15!63;CL:0000576!6.54e-15!63;CL:0000040!6.54e-15!63;CL:0000559!6.54e-15!63;CL:0002009!8.09e-15!65;CL:0002057!1.16e-14!42;CL:0000860!3.35e-13!45;CL:0000839!8.73e-13!70;CL:0000557!1.27e-12!71;CL:0000766!4.03e-11!76;CL:0000763!4.71e-09!112;CL:0000049!4.71e-09!112;CL:0002087!3.05e-07!119 | |ontology_enrichment_celltype=CL:0002194!6.54e-15!63;CL:0000576!6.54e-15!63;CL:0000040!6.54e-15!63;CL:0000559!6.54e-15!63;CL:0002009!8.09e-15!65;CL:0002057!1.16e-14!42;CL:0000860!3.35e-13!45;CL:0000839!8.73e-13!70;CL:0000557!1.27e-12!71;CL:0000766!4.03e-11!76;CL:0000763!4.71e-09!112;CL:0000049!4.71e-09!112;CL:0002087!3.05e-07!119 | ||
|ontology_enrichment_celltype_v019=CL:0000860;1.16e-68;33!CL:0002057;1.16e-68;33!CL:0000473;1.56e-61;39!CL:0000234;1.56e-61;39!CL:0000576;1.91e-31;48!CL:0000766;3.20e-19;69!CL:0000763;1.09e-11;100!CL:0000235;2.04e-09;6!CL:0002087;1.55e-07;104!CL:0000738;4.53e-07;136 | |ontology_enrichment_celltype_v019=CL:0000860;1.16e-68;33!CL:0002057;1.16e-68;33!CL:0000473;1.56e-61;39!CL:0000234;1.56e-61;39!CL:0000576;1.91e-31;48!CL:0000766;3.20e-19;69!CL:0000763;1.09e-11;100!CL:0000235;2.04e-09;6!CL:0002087;1.55e-07;104!CL:0000738;4.53e-07;136 | ||
|ontology_enrichment_celltype_v019_2=CL:0000473,1.70e-64,48;CL:0000234,1.70e-64,48;CL:0000860,2.91e-56,42;CL:0002057,2.91e-56,42;CL:0002194,6.06e-50,59;CL:0000576,6.06e-50,59;CL:0000040,6.06e-50,59;CL:0000559,6.06e-50,59;CL:0002009,4.57e-48,61;CL:0000839,7.28e-44,66;CL:0000557,4.25e-43,67;CL:0000766,1.39e-39,72;CL:0000763,1.73e-27,108;CL:0000049,1.73e-27,108;CL:0002087,2.54e-25,115;CL:0002031,6.33e-24,120;CL:0000738,3.79e-20,136;CL:0002032,2.97e-18,161;CL:0000837,2.97e-18,161;CL:0000037,3.89e-17,168;CL:0000988,7.83e-16,177;CL:0000235,2.39e-09,6;CL:0000134,5.13e-09,354;CL:0002320,1.19e-08,361;CL:0000048,1.97e-07,427;CL:0000219,2.31e-07,386;CL:0000723,3.47e-07,433;CL:0000034,7.23e-07,441 | |||
|ontology_enrichment_development_v019=CL:0002057;3.19e-41;42!CL:0000049;1.45e-10;108 | |ontology_enrichment_development_v019=CL:0002057;3.19e-41;42!CL:0000049;1.45e-10;108 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002193!1.84e-10!112;UBERON:0002390!2.46e-10!102;UBERON:0003061!2.46e-10!102;UBERON:0002371!3.31e-10!80;UBERON:0001474!1.29e-09!86;UBERON:0004765!7.78e-08!101;UBERON:0001434!7.78e-08!101;UBERON:0002405!2.19e-07!115 | |ontology_enrichment_uberon=UBERON:0002193!1.84e-10!112;UBERON:0002390!2.46e-10!102;UBERON:0003061!2.46e-10!102;UBERON:0002371!3.31e-10!80;UBERON:0001474!1.29e-09!86;UBERON:0004765!7.78e-08!101;UBERON:0001434!7.78e-08!101;UBERON:0002405!2.19e-07!115 | ||
|ontology_enrichment_uberon_v019= | |ontology_enrichment_uberon_v019= | ||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,8.33e-40,76;UBERON:0001474,2.55e-36,82;UBERON:0002390,1.24e-35,98;UBERON:0003061,1.24e-35,98;UBERON:0002193,1.61e-33,108;UBERON:0002405,3.45e-33,93;UBERON:0004765,2.17e-32,90;UBERON:0001434,2.35e-28,100;UBERON:0002204,1.67e-18,167;UBERON:0003081,4.74e-17,203;UBERON:0000926,1.34e-10,315;UBERON:0004120,1.34e-10,315;UBERON:0006603,1.34e-10,315;UBERON:0002384,3.77e-08,371 | |||
|phase1_expression=0,0.642301571672949,0.140954404095971,0,0.446961094427288,0,0,0,0.783556884599516,0.491467873003018,0,0.436882744260345,0,0.247532705920093,0,0,1.20538905604795,0.730310090387373,0,0,0,0,0,0.136874425072884,0.125542639594803,0,0.164201178899891,0.157421562627358,0.393364276848904,0,0,0,0,0.369754010166788,0.0774672005803016,0,0,0,0,0,0.223915474239924,0.32389366601898,0,1.45398238779565,0.377875943688809,1.94067248950253,3.71886459049095,6.57868620834921,2.78735733805593,1.1507695692886,2.30544635876191,1.18241114944293,2.75796544589295,4.51839278508678,2.70852973188684,5.64727018627814,7.36846605156184,2.02251136000576,3.06083892370903,3.85114832491312,3.19668562899521,0.329851300186716,3.78980949481101,1.27867425159808,6.09439401120026,1.70215567407342,4.9825779919646,2.51248665256743,3.12889751052121,1.52032191293582,3.63239701580021,2.20966581592539,0.949387162322653,0.422510572623884,0,0,0.112328631146495,0.600707571366025,0,0,0,0.182664153764634,0,0,0,0,0,0,0,0,0,0,0,0,0,0.263384084775077,0.196709770113833,0.393010762749165,0,0,0,0,0,0,0.589211814949674,0.221533894583621,0.270803863765016,0.640456598628376,0.390178042679635,0,0.276350017785848,0,0,0,0,0.113309342697566,0.383220493601921,0,0.253019692019503,0,0,0,0,0.127986611154418,0,0.236777252044017,0,0,0,0,0,0,0,0,0,0.434539556882471,1.5905718941022,0,0.0945348171640679,0.221729397462564,0.263504357079378,0,0,0,0,0.870648686496336,0.797747763113191,0.238490624305342,0,0,0,0,0.347140501607594,0,0,0.275118041940067,0,1.03366703667732,0,0.33472061276467,0.402829317109147,0,0.976248230192678,0,0,0.357198913136319,0,0,0,0,0.183201743930407,0,0,0,0,0.633152558322899,0.132409180813219,0.573673241497627,0,0,0,0.49333509683432,0,0.134710672069688,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.494533858557114,0,0,0.168336113954066,0,0.277064115484183,0,0,0,0.226864366320042,0,0.213557388818567,0.423863802319124,0,0.103052529238439,0.257640540045629,0.37223371266318,0.168776332241266,0.0974370051611986,0,0.368199594569197,0,0,0.10075209822764,0,0,0.545492241181669,0,0.243947412259191,0,0.116193942869518,0,0,0,0,0.643240938192885,0,0.464367928031979,0,0.236613600079688,0.505754070234305,0.241011029883482,0.330881918197182,0.435758888184812,0,0.134831308160164,0.588664395376038,0,0,0,0,0,0,0,0,0,0.122988438543114,0.343135620597051,0.109750285408626,0,0.301586917234893,0.277765335475589,0,0,0,0.115930404975077,0.117408694235822,0.288732895522148,0.462985512576611,0.761016608938393,0,0,0.492434012174795,1.17002132569619,0.297262324577456,0,0.335964256397719,0.141775097242386,0.0895585227028483,0,0,0,0.616339038092582,0,0,0,0.190493682876507,0,0,0,0.205654985406647,0,0,0.112131084345361,0.43596006883328,0.1466765716419,0.129271715757778,0,1.690605505112,1.32969058292435,0,0,0,0,0.57191197463259,0,0,0.325736184293735,0.355391948742546,0,0,0,2.59929777073348,1.2162378064119,1.50677127429638,8.43335757932127,0.479249710983165,0,0,0,0,0.358121926479791,0.224170287987055,0,0.215627574859517,0.128343036279748,0,0,0.773288812777695,0,0,0.749007023947182,0,0,0.24538298343828,0,0,1.03985430765404,0,0.788512075169673,0.117141414992713,0,0,0,0,0,0.0868836144680828,0,0,0,0.215714200818617,0,0,0,0.30239029332968,0,0.153461973288062,0.841980283299221,0.256278298511402,0,2.0911009748669,0,0.616838775210622,0.177561725313127,0.246381468041427,0,0,0,0.601519410909855,0.644566922551274,0,0.182091168006717,0.262248829918848,0,0.15403067420883,0,0,0.105551628892876,0,0,2.37507507712353,0,0,0,0,0,0.223874754722178,0.219259876645935,0,0.256450125116389,0.328014645699706,0,0,0.0915694648183434,0.082509499920588,0,0,1.6068392984416,0.193341436584244,0.154048617114644,0,0.137836572484531,0,0.145016693914229,0.255679882248303,0,0.165284915360978,0,0.127612712494584,0.2023155617111,0.929691098594572,0,0,0,0,0,0.18532421910392,0,0,0.316379424718726,0,0,0,0,0,0.179872457583315,0,0.353437207037059,0,0,0,0.48763373908959,0.731140468893853,0,0.818999468447914,1.1312434556297,0,0,0,0,0,0,0,0.6196469961995,0,0.143411352204052,0.196498082026242,0,0,0,0.658589785919804,0.379473173765715,0,0.0962221127255121,0,0,0,0,0,0,0.229723400206959,1.52234282769651,0.764637207142375,1.70894156152249,0.476463550915578,0.822724546172388,0,0,1.58625035258854,0.320472213382419,0,0.245040215981032,0.557409525377156,0,0.0711418433484141,0.159426272728822,0.399158742865633,0.191505370132367,1.2700414963433,0.973865820823666,1.68478306868075,0.228234679033192,0.313359791546046,0,0.338583555603207,0.1605880751037,0.201799707191048,0,0,0,0,0,0,0,0,0.270455678475983,0,0,0,0.146508179271894,0,0,0,0,0.296964680832639,0.307160702099232,0,0.140669416410513,0.556543525114529,1.15362711958732,0.422250816255987,0.19924798825107,0,0.755798243562828,0.715880777515084,0.123084805461069,0,0,0,0,0.197286811273867,0,0,0,0,0,0,0.0874599999961957,0,0.1137934482855,0.254253650292766,0.236387681767936,0,0.583209226766509,0.347249989866585,0,0.241192877250816,0,0,0,0,0,0.139423744278603,0.0769502585037971,0.341826167541004,0,0.2692729332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|phase1_expression=0,0.642301571672949,0.140954404095971,0,0.446961094427288,0,0,0,0.783556884599516,0.491467873003018,0,0.436882744260345,0,0.247532705920093,0,0,1.20538905604795,0.730310090387373,0,0,0,0,0,0.136874425072884,0.125542639594803,0,0.164201178899891,0.157421562627358,0.393364276848904,0,0,0,0,0.369754010166788,0.0774672005803016,0,0,0,0,0,0.223915474239924,0.32389366601898,0,1.45398238779565,0.377875943688809,1.94067248950253,3.71886459049095,6.57868620834921,2.78735733805593,1.1507695692886,2.30544635876191,1.18241114944293,2.75796544589295,4.51839278508678,2.70852973188684,5.64727018627814,7.36846605156184,2.02251136000576,3.06083892370903,3.85114832491312,3.19668562899521,0.329851300186716,3.78980949481101,1.27867425159808,6.09439401120026,1.70215567407342,4.9825779919646,2.51248665256743,3.12889751052121,1.52032191293582,3.63239701580021,2.20966581592539,0.949387162322653,0.422510572623884,0,0,0.112328631146495,0.600707571366025,0,0,0,0.182664153764634,0,0,0,0,0,0,0,0,0,0,0,0,0,0.263384084775077,0.196709770113833,0.393010762749165,0,0,0,0,0,0,0.589211814949674,0.221533894583621,0.270803863765016,0.640456598628376,0.390178042679635,0,0.276350017785848,0,0,0,0,0.113309342697566,0.383220493601921,0,0.253019692019503,0,0,0,0,0.127986611154418,0,0.236777252044017,0,0,0,0,0,0,0,0,0,0.434539556882471,1.5905718941022,0,0.0945348171640679,0.221729397462564,0.263504357079378,0,0,0,0,0.870648686496336,0.797747763113191,0.238490624305342,0,0,0,0,0.347140501607594,0,0,0.275118041940067,0,1.03366703667732,0,0.33472061276467,0.402829317109147,0,0.976248230192678,0,0,0.357198913136319,0,0,0,0,0.183201743930407,0,0,0,0,0.633152558322899,0.132409180813219,0.573673241497627,0,0,0,0.49333509683432,0,0.134710672069688,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.494533858557114,0,0,0.168336113954066,0,0.277064115484183,0,0,0,0.226864366320042,0,0.213557388818567,0.423863802319124,0,0.103052529238439,0.257640540045629,0.37223371266318,0.168776332241266,0.0974370051611986,0,0.368199594569197,0,0,0.10075209822764,0,0,0.545492241181669,0,0.243947412259191,0,0.116193942869518,0,0,0,0,0.643240938192885,0,0.464367928031979,0,0.236613600079688,0.505754070234305,0.241011029883482,0.330881918197182,0.435758888184812,0,0.134831308160164,0.588664395376038,0,0,0,0,0,0,0,0,0,0.122988438543114,0.343135620597051,0.109750285408626,0,0.301586917234893,0.277765335475589,0,0,0,0.115930404975077,0.117408694235822,0.288732895522148,0.462985512576611,0.761016608938393,0,0,0.492434012174795,1.17002132569619,0.297262324577456,0,0.335964256397719,0.141775097242386,0.0895585227028483,0,0,0,0.616339038092582,0,0,0,0.190493682876507,0,0,0,0.205654985406647,0,0,0.112131084345361,0.43596006883328,0.1466765716419,0.129271715757778,0,1.690605505112,1.32969058292435,0,0,0,0,0.57191197463259,0,0,0.325736184293735,0.355391948742546,0,0,0,2.59929777073348,1.2162378064119,1.50677127429638,8.43335757932127,0.479249710983165,0,0,0,0,0.358121926479791,0.224170287987055,0,0.215627574859517,0.128343036279748,0,0,0.773288812777695,0,0,0.749007023947182,0,0,0.24538298343828,0,0,1.03985430765404,0,0.788512075169673,0.117141414992713,0,0,0,0,0,0.0868836144680828,0,0,0,0.215714200818617,0,0,0,0.30239029332968,0,0.153461973288062,0.841980283299221,0.256278298511402,0,2.0911009748669,0,0.616838775210622,0.177561725313127,0.246381468041427,0,0,0,0.601519410909855,0.644566922551274,0,0.182091168006717,0.262248829918848,0,0.15403067420883,0,0,0.105551628892876,0,0,2.37507507712353,0,0,0,0,0,0.223874754722178,0.219259876645935,0,0.256450125116389,0.328014645699706,0,0,0.0915694648183434,0.082509499920588,0,0,1.6068392984416,0.193341436584244,0.154048617114644,0,0.137836572484531,0,0.145016693914229,0.255679882248303,0,0.165284915360978,0,0.127612712494584,0.2023155617111,0.929691098594572,0,0,0,0,0,0.18532421910392,0,0,0.316379424718726,0,0,0,0,0,0.179872457583315,0,0.353437207037059,0,0,0,0.48763373908959,0.731140468893853,0,0.818999468447914,1.1312434556297,0,0,0,0,0,0,0,0.6196469961995,0,0.143411352204052,0.196498082026242,0,0,0,0.658589785919804,0.379473173765715,0,0.0962221127255121,0,0,0,0,0,0,0.229723400206959,1.52234282769651,0.764637207142375,1.70894156152249,0.476463550915578,0.822724546172388,0,0,1.58625035258854,0.320472213382419,0,0.245040215981032,0.557409525377156,0,0.0711418433484141,0.159426272728822,0.399158742865633,0.191505370132367,1.2700414963433,0.973865820823666,1.68478306868075,0.228234679033192,0.313359791546046,0,0.338583555603207,0.1605880751037,0.201799707191048,0,0,0,0,0,0,0,0,0.270455678475983,0,0,0,0.146508179271894,0,0,0,0,0.296964680832639,0.307160702099232,0,0.140669416410513,0.556543525114529,1.15362711958732,0.422250816255987,0.19924798825107,0,0.755798243562828,0.715880777515084,0.123084805461069,0,0,0,0,0.197286811273867,0,0,0,0,0,0,0.0874599999961957,0,0.1137934482855,0.254253650292766,0.236387681767936,0,0.583209226766509,0.347249989866585,0,0.241192877250816,0,0,0,0,0,0.139423744278603,0.0769502585037971,0.341826167541004,0,0.2692729332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| ||
|short_description=p16@LIMS1 | |short_description=p16@LIMS1 | ||
}} | }} |
Latest revision as of 06:46, 16 September 2015
Short description: | p16@LIMS1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_16_at_LIMS1_5end |
Coexpression cluster: | NA |
Association with transcript: | -259bp_to_AK025661_5end |
EntrezGene: | LIMS1 |
HGNC: | 6616 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
defensive cell | 1.70e-64 | 48 |
phagocyte | 1.70e-64 | 48 |
classical monocyte | 2.91e-56 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.91e-56 | 42 |
monopoietic cell | 6.06e-50 | 59 |
monocyte | 6.06e-50 | 59 |
monoblast | 6.06e-50 | 59 |
promonocyte | 6.06e-50 | 59 |
macrophage dendritic cell progenitor | 4.57e-48 | 61 |
myeloid lineage restricted progenitor cell | 7.28e-44 | 66 |
granulocyte monocyte progenitor cell | 4.25e-43 | 67 |
myeloid leukocyte | 1.39e-39 | 72 |
myeloid cell | 1.73e-27 | 108 |
common myeloid progenitor | 1.73e-27 | 108 |
nongranular leukocyte | 2.54e-25 | 115 |
hematopoietic lineage restricted progenitor cell | 6.33e-24 | 120 |
leukocyte | 3.79e-20 | 136 |
hematopoietic oligopotent progenitor cell | 2.97e-18 | 161 |
hematopoietic multipotent progenitor cell | 2.97e-18 | 161 |
hematopoietic stem cell | 3.89e-17 | 168 |
hematopoietic cell | 7.83e-16 | 177 |
macrophage | 2.39e-09 | 6 |
mesenchymal cell | 5.13e-09 | 354 |
connective tissue cell | 1.19e-08 | 361 |
multi fate stem cell | 1.97e-07 | 427 |
motile cell | 2.31e-07 | 386 |
somatic stem cell | 3.47e-07 | 433 |
stem cell | 7.23e-07 | 441 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 8.33e-40 | 76 |
bone element | 2.55e-36 | 82 |
hematopoietic system | 1.24e-35 | 98 |
blood island | 1.24e-35 | 98 |
hemolymphoid system | 1.61e-33 | 108 |
immune system | 3.45e-33 | 93 |
skeletal element | 2.17e-32 | 90 |
skeletal system | 2.35e-28 | 100 |
musculoskeletal system | 1.67e-18 | 167 |
lateral plate mesoderm | 4.74e-17 | 203 |
mesoderm | 1.34e-10 | 315 |
mesoderm-derived structure | 1.34e-10 | 315 |
presumptive mesoderm | 1.34e-10 | 315 |
connective tissue | 3.77e-08 | 371 |