FFCP PHASE1:Hg19::chr16:30107516..30107569,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr16:30107516..30107569,-
|short_description=p1@YPEL3
|description=CAGE_peak_1_at_YPEL3_5end
|association_with_transcript=0bp_to_ENST00000398838,ENST0000039884...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=83719 | |EntrezGene=83719 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=18327 | |HGNC=18327 | ||
|TSSclassifier=strong | |||
|UniProt=P61236 | |UniProt=P61236 | ||
|association_with_transcript=0bp_to_ENST00000398838,ENST00000398841,NM_001145524,NM_031477,uc002dwl.2,uc002dwm.2,uc002dwn.1_5end | |||
|cluster_id=chr16:30107516..30107569,- | |||
|coexpression_cluster_id=C14 | |||
|description=CAGE_peak_1_at_YPEL3_5end | |||
|id=chr16:30107516..30107569,- | |||
|ontology_enrichment_celltype=CL:0000791!1.87e-07!18;CL:0000789!1.87e-07!18;CL:0002420!1.87e-07!18;CL:0002419!1.87e-07!18;CL:0000790!1.87e-07!18 | |||
|ontology_enrichment_celltype_v019=CL:0000791;1.89e-07;18!CL:0000789;1.89e-07;18!CL:0002419;1.89e-07;18 | |||
|ontology_enrichment_celltype_v019_2=CL:0000738,1.78e-07,136;CL:0000791,1.87e-07,18;CL:0000789,1.87e-07,18;CL:0002420,1.87e-07,18;CL:0002419,1.87e-07,18;CL:0000790,1.87e-07,18 | |||
|ontology_enrichment_development_v019=CL:0000790;1.89e-07;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!8.46e-39!115;UBERON:0001049!3.96e-19!57;UBERON:0005068!3.96e-19!57;UBERON:0006241!3.96e-19!57;UBERON:0007135!3.96e-19!57;UBERON:0002616!2.55e-17!59;UBERON:0003080!1.17e-14!42;UBERON:0000955!1.59e-14!69;UBERON:0006238!1.59e-14!69;UBERON:0002780!3.01e-14!41;UBERON:0001890!3.01e-14!41;UBERON:0006240!3.01e-14!41;UBERON:0001017!3.50e-13!82;UBERON:0005743!8.29e-13!86;UBERON:0001893!1.11e-12!34;UBERON:0002619!1.83e-12!22;UBERON:0002020!1.97e-12!34;UBERON:0003528!1.97e-12!34;UBERON:0002791!4.15e-12!33;UBERON:0001869!5.98e-12!32;UBERON:0001950!1.12e-11!20;UBERON:0003075!1.02e-10!86;UBERON:0007284!1.02e-10!86;UBERON:0000073!2.72e-10!94;UBERON:0001016!2.72e-10!94;UBERON:0000956!1.68e-09!25;UBERON:0000203!1.68e-09!25;UBERON:0002346!2.07e-09!90;UBERON:0003056!4.47e-08!61;UBERON:0000153!2.69e-07!129;UBERON:0007811!2.69e-07!129 | |||
|ontology_enrichment_uberon_v019=UBERON:0002619;1.85e-12;22!UBERON:0001950;1.13e-11;20!UBERON:0001893;6.21e-11;34!UBERON:0001869;1.05e-10;32!UBERON:0003528;1.57e-10;34!UBERON:0002020;1.57e-10;34!UBERON:0000073;1.58e-10;53!UBERON:0002616;1.58e-10;53!UBERON:0002780;1.70e-10;41!UBERON:0001890;1.70e-10;41!UBERON:0002791;1.72e-10;32!UBERON:0007023;1.96e-10;114!UBERON:0000956;1.64e-09;25!UBERON:0000203;1.64e-09;25!UBERON:0001017;5.43e-07;75!UBERON:0000955;7.74e-07;68 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,3.79e-38,114;UBERON:0001049,1.04e-18,56;UBERON:0005068,1.04e-18,56;UBERON:0006241,1.04e-18,56;UBERON:0007135,1.04e-18,56;UBERON:0000073,5.06e-18,53;UBERON:0002616,5.06e-18,53;UBERON:0002780,3.01e-14,41;UBERON:0001890,3.01e-14,41;UBERON:0003080,3.01e-14,41;UBERON:0006240,3.01e-14,41;UBERON:0000955,3.85e-14,68;UBERON:0006238,3.85e-14,68;UBERON:0001017,7.99e-13,81;UBERON:0001893,1.11e-12,34;UBERON:0002619,1.83e-12,22;UBERON:0003528,1.97e-12,34;UBERON:0002020,1.97e-12,34;UBERON:0001869,5.98e-12,32;UBERON:0003075,8.59e-12,82;UBERON:0007284,8.59e-12,82;UBERON:0002791,9.90e-12,32;UBERON:0001950,1.12e-11,20;UBERON:0002346,2.38e-10,86;UBERON:0001016,3.23e-10,89;UBERON:0010371,9.31e-10,104;UBERON:0000956,1.68e-09,25;UBERON:0000203,1.68e-09,25;UBERON:0003056,5.07e-08,61 | |||
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| ||
|short_description=p1@YPEL3 | |||
}} | }} |
Latest revision as of 06:39, 16 September 2015
Short description: | p1@YPEL3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_YPEL3_5end |
Coexpression cluster: | C14_Whole_blood_Reticulocytes_liver_Neutrophils_Eosinophils_spleen |
Association with transcript: | 0bp_to_ENST00000398838, ENST00000398841, NM_001145524, NM_031477, uc002dwl.2, uc002dwm.2, uc002dwn.1_5end |
EntrezGene: | YPEL3 |
HGNC: | 18327 |
UniProt: | P61236 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
leukocyte | 1.78e-07 | 136 |
mature alpha-beta T cell | 1.87e-07 | 18 |
alpha-beta T cell | 1.87e-07 | 18 |
immature T cell | 1.87e-07 | 18 |
mature T cell | 1.87e-07 | 18 |
immature alpha-beta T cell | 1.87e-07 | 18 |
Ontology term | p-value | n |
---|---|---|
adult organism | 3.79e-38 | 114 |
neural tube | 1.04e-18 | 56 |
neural rod | 1.04e-18 | 56 |
future spinal cord | 1.04e-18 | 56 |
neural keel | 1.04e-18 | 56 |
regional part of nervous system | 5.06e-18 | 53 |
regional part of brain | 5.06e-18 | 53 |
regional part of forebrain | 3.01e-14 | 41 |
forebrain | 3.01e-14 | 41 |
anterior neural tube | 3.01e-14 | 41 |
future forebrain | 3.01e-14 | 41 |
brain | 3.85e-14 | 68 |
future brain | 3.85e-14 | 68 |
central nervous system | 7.99e-13 | 81 |
telencephalon | 1.11e-12 | 34 |
regional part of cerebral cortex | 1.83e-12 | 22 |
brain grey matter | 1.97e-12 | 34 |
gray matter | 1.97e-12 | 34 |
cerebral hemisphere | 5.98e-12 | 32 |
neural plate | 8.59e-12 | 82 |
presumptive neural plate | 8.59e-12 | 82 |
regional part of telencephalon | 9.90e-12 | 32 |
neocortex | 1.12e-11 | 20 |
neurectoderm | 2.38e-10 | 86 |
nervous system | 3.23e-10 | 89 |
ecto-epithelium | 9.31e-10 | 104 |
cerebral cortex | 1.68e-09 | 25 |
pallium | 1.68e-09 | 25 |
pre-chordal neural plate | 5.07e-08 | 61 |