FFCP PHASE1:Hg19::chr6:152623505..152623516,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=23345 | |EntrezGene=23345 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=17089 | |HGNC=17089 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-101bp_to_ENST00000489156_5end | |association_with_transcript=-101bp_to_ENST00000489156_5end | ||
|cluster_id=chr6:152623505..152623516,- | |||
|description=CAGE_peak_32_at_SYNE1_5end | |description=CAGE_peak_32_at_SYNE1_5end | ||
|id=chr6:152623505..152623516,- | |id=chr6:152623505..152623516,- | ||
|ontology_enrichment_celltype=CL:0002087!7.11e-19!119;CL:0002031!2.07e-18!124;CL:0000738!5.20e-17!140;CL:0000839!1.73e-15!70;CL:0000557!3.96e-15!71;CL:0002194!8.53e-15!63;CL:0000576!8.53e-15!63;CL:0000040!8.53e-15!63;CL:0000559!8.53e-15!63;CL:0000766!1.90e-14!76;CL:0002009!4.69e-14!65;CL:0002057!2.65e-13!42;CL:0000037!3.10e-12!172;CL:0000566!3.10e-12!172;CL:0002032!4.49e-12!165;CL:0000837!4.49e-12!165;CL:0000860!5.97e-12!45;CL:0000988!2.48e-11!182;CL:0000945!9.12e-10!24;CL:0000826!9.12e-10!24;CL:0000763!2.77e-07!112;CL:0000049!2.77e-07!112 | |ontology_enrichment_celltype=CL:0002087!7.11e-19!119;CL:0002031!2.07e-18!124;CL:0000738!5.20e-17!140;CL:0000839!1.73e-15!70;CL:0000557!3.96e-15!71;CL:0002194!8.53e-15!63;CL:0000576!8.53e-15!63;CL:0000040!8.53e-15!63;CL:0000559!8.53e-15!63;CL:0000766!1.90e-14!76;CL:0002009!4.69e-14!65;CL:0002057!2.65e-13!42;CL:0000037!3.10e-12!172;CL:0000566!3.10e-12!172;CL:0002032!4.49e-12!165;CL:0000837!4.49e-12!165;CL:0000860!5.97e-12!45;CL:0000988!2.48e-11!182;CL:0000945!9.12e-10!24;CL:0000826!9.12e-10!24;CL:0000763!2.77e-07!112;CL:0000049!2.77e-07!112 | ||
|ontology_enrichment_celltype_v019=CL:0000235;7.77e-28;6!CL:0000473;2.93e-11;39!CL:0000234;2.93e-11;39 | |ontology_enrichment_celltype_v019=CL:0000235;7.77e-28;6!CL:0000473;2.93e-11;39!CL:0000234;2.93e-11;39 | ||
|ontology_enrichment_celltype_v019_2=CL:0000235,7.78e-28,6;CL:0000473,1.74e-09,48;CL:0000234,1.74e-09,48;CL:0002194,1.36e-07,59;CL:0000576,1.36e-07,59;CL:0000040,1.36e-07,59;CL:0000559,1.36e-07,59;CL:0002009,2.39e-07,61;CL:0002087,2.78e-07,115;CL:0002031,5.78e-07,120;CL:0000839,8.46e-07,66 | |||
|ontology_enrichment_development_v019=UBERON:0001045;1.18e-19;1!UBERON:0005425;3.25e-19;1!UBERON:0003056;2.79e-07;3 | |ontology_enrichment_development_v019=UBERON:0001045;1.18e-19;1!UBERON:0005425;3.25e-19;1!UBERON:0003056;2.79e-07;3 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:4960;3.25e-19;1!DOID:0070004;3.25e-19;1 | |ontology_enrichment_disease_v019=DOID:4960;3.25e-19;1!DOID:0070004;3.25e-19;1 | ||
|ontology_enrichment_disease_v019_2=DOID:4960,4.69e-19,1;DOID:0070004,4.69e-19,1 | |||
|ontology_enrichment_uberon=UBERON:0002371!1.61e-15!80;UBERON:0002193!3.62e-15!112;UBERON:0001474!8.26e-15!86;UBERON:0002390!4.80e-14!102;UBERON:0003061!4.80e-14!102;UBERON:0002405!1.20e-13!115;UBERON:0004765!1.03e-11!101;UBERON:0001434!1.03e-11!101;UBERON:0007023!5.15e-07!115 | |ontology_enrichment_uberon=UBERON:0002371!1.61e-15!80;UBERON:0002193!3.62e-15!112;UBERON:0001474!8.26e-15!86;UBERON:0002390!4.80e-14!102;UBERON:0003061!4.80e-14!102;UBERON:0002405!1.20e-13!115;UBERON:0004765!1.03e-11!101;UBERON:0001434!1.03e-11!101;UBERON:0007023!5.15e-07!115 | ||
|ontology_enrichment_uberon_v019=UBERON:0001154;1.18e-19;1!UBERON:0001153;1.18e-19;1!UBERON:0009854;1.18e-19;1!UBERON:0002135;3.25e-19;1!UBERON:0000941;3.25e-19;1!UBERON:0001785;3.25e-19;1!UBERON:0002464;3.25e-19;1!UBERON:0004904;3.25e-19;1!UBERON:0001021;3.25e-19;1!UBERON:0003714;2.72e-10;2!UBERON:0005162;2.72e-10;2!UBERON:0000122;2.72e-10;2!UBERON:0002133;2.72e-10;2!UBERON:0003978;2.79e-07;3!UBERON:0000946;2.79e-07;3 | |ontology_enrichment_uberon_v019=UBERON:0001154;1.18e-19;1!UBERON:0001153;1.18e-19;1!UBERON:0009854;1.18e-19;1!UBERON:0002135;3.25e-19;1!UBERON:0000941;3.25e-19;1!UBERON:0001785;3.25e-19;1!UBERON:0002464;3.25e-19;1!UBERON:0004904;3.25e-19;1!UBERON:0001021;3.25e-19;1!UBERON:0003714;2.72e-10;2!UBERON:0005162;2.72e-10;2!UBERON:0000122;2.72e-10;2!UBERON:0002133;2.72e-10;2!UBERON:0003978;2.79e-07;3!UBERON:0000946;2.79e-07;3 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0001154,1.30e-19,1;UBERON:0001153,1.30e-19,1;UBERON:0001045,1.30e-19,1;UBERON:0000941,1.88e-19,1;UBERON:0001785,1.88e-19,1;UBERON:0002464,1.88e-19,1;UBERON:0004904,1.88e-19,1;UBERON:0001021,1.88e-19,1;UBERON:0003902,1.88e-19,1;UBERON:0005425,1.88e-19,1;UBERON:0002135,2.25e-19,1;UBERON:0003714,2.07e-10,2;UBERON:0005162,2.07e-10,2;UBERON:0000122,2.07e-10,2;UBERON:0002133,2.27e-10,2;UBERON:0002371,2.85e-08,76;UBERON:0001474,1.17e-07,82;UBERON:0003978,2.47e-07,3;UBERON:0009751,2.47e-07,3;UBERON:0000946,2.47e-07,3;UBERON:0002523,2.47e-07,3;UBERON:0005983,2.47e-07,3;UBERON:0002165,2.47e-07,3;UBERON:0002062,2.47e-07,3;UBERON:0007280,2.47e-07,3;UBERON:0004765,5.78e-07,90;UBERON:0002405,9.81e-07,93 | |||
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| ||
|short_description=p32@SYNE1 | |short_description=p32@SYNE1 | ||
}} | }} |
Latest revision as of 06:37, 16 September 2015
Short description: | p32@SYNE1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_32_at_SYNE1_5end |
Coexpression cluster: | NA |
Association with transcript: | -101bp_to_ENST00000489156_5end |
EntrezGene: | SYNE1 |
HGNC: | 17089 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
macrophage | 7.78e-28 | 6 |
defensive cell | 1.74e-09 | 48 |
phagocyte | 1.74e-09 | 48 |
monopoietic cell | 1.36e-07 | 59 |
monocyte | 1.36e-07 | 59 |
monoblast | 1.36e-07 | 59 |
promonocyte | 1.36e-07 | 59 |
macrophage dendritic cell progenitor | 2.39e-07 | 61 |
nongranular leukocyte | 2.78e-07 | 115 |
hematopoietic lineage restricted progenitor cell | 5.78e-07 | 120 |
myeloid lineage restricted progenitor cell | 8.46e-07 | 66 |
Ontology term | p-value | n |
---|---|---|
vermiform appendix | 1.30e-19 | 1 |
caecum | 1.30e-19 | 1 |
midgut | 1.30e-19 | 1 |
cranial nerve II | 1.88e-19 | 1 |
cranial nerve | 1.88e-19 | 1 |
nerve trunk | 1.88e-19 | 1 |
nerve connecting eye with brain | 1.88e-19 | 1 |
nerve | 1.88e-19 | 1 |
retinal neural layer | 1.88e-19 | 1 |
presumptive neural retina | 1.88e-19 | 1 |
mitral valve | 2.25e-19 | 1 |
neural tissue | 2.07e-10 | 2 |
multi cell component structure | 2.07e-10 | 2 |
neuron projection bundle | 2.07e-10 | 2 |
atrioventricular valve | 2.27e-10 | 2 |
bone marrow | 2.85e-08 | 76 |
bone element | 1.17e-07 | 82 |
valve | 2.47e-07 | 3 |
cardiac mesenchyme | 2.47e-07 | 3 |
cardial valve | 2.47e-07 | 3 |
tunica intima | 2.47e-07 | 3 |
heart layer | 2.47e-07 | 3 |
endocardium | 2.47e-07 | 3 |
endocardial cushion | 2.47e-07 | 3 |
presumptive endocardium | 2.47e-07 | 3 |
skeletal element | 5.78e-07 | 90 |
immune system | 9.81e-07 | 93 |
Ontology term | p-value | n |
---|---|---|
bone marrow cancer | 4.69e-19 | 1 |
myeloma | 4.69e-19 | 1 |