FFCP PHASE1:Hg19::chr6:152623231..152623294,-: Difference between revisions
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(Created page with "{{FFCP
|id=chr6:152623231..152623294,-
|short_description=p2@SYNE1
|description=CAGE_peak_2_at_SYNE1_5end
|association_with_transcript=0bp_to_ENST00000537033,ENST000005406...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=23345 | |EntrezGene=23345 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=17089 | |HGNC=17089 | ||
|TSSclassifier=strong | |||
|UniProt=F5GZ83,F5H6R8 | |UniProt=F5GZ83,F5H6R8 | ||
|association_with_transcript=0bp_to_ENST00000537033,ENST00000540663,uc010kiy.1_5end | |||
|cluster_id=chr6:152623231..152623294,- | |||
|description=CAGE_peak_2_at_SYNE1_5end | |||
|id=chr6:152623231..152623294,- | |||
|ontology_enrichment_celltype=CL:0002087!1.12e-23!119;CL:0000738!3.77e-23!140;CL:0002031!2.71e-22!124;CL:0000838!1.09e-21!52;CL:0000542!1.77e-21!53;CL:0000051!1.77e-21!53;CL:0000037!1.37e-18!172;CL:0000566!1.37e-18!172;CL:0000988!1.58e-16!182;CL:0002032!2.42e-16!165;CL:0000837!2.42e-16!165;CL:0000791!2.51e-11!18;CL:0000789!2.51e-11!18;CL:0002420!2.51e-11!18;CL:0002419!2.51e-11!18;CL:0000790!2.51e-11!18;CL:0000084!1.14e-10!25;CL:0000827!1.14e-10!25;CL:0000945!1.22e-10!24;CL:0000826!1.22e-10!24;CL:0000625!9.13e-08!11;CL:0000236!1.14e-07!14 | |||
|ontology_enrichment_celltype_v019=CL:0000542;3.24e-13;53!CL:0000791;9.12e-12;18!CL:0000789;9.12e-12;18!CL:0002419;9.12e-12;18!CL:0000084;4.56e-11;25!CL:0000945;5.14e-11;24!CL:0000625;4.78e-08;11!CL:0002087;7.77e-08;104!CL:0000236;9.96e-08;13 | |||
|ontology_enrichment_celltype_v019_2=CL:0002087,2.46e-27,115;CL:0000738,8.98e-27,136;CL:0002031,7.13e-26,120;CL:0000838,2.70e-22,52;CL:0000542,4.42e-22,53;CL:0000051,4.42e-22,53;CL:0000037,9.86e-22,168;CL:0002032,2.84e-19,161;CL:0000837,2.84e-19,161;CL:0000988,6.24e-19,177;CL:0000791,1.21e-11,18;CL:0000789,1.21e-11,18;CL:0002420,1.21e-11,18;CL:0002419,1.21e-11,18;CL:0000790,1.21e-11,18;CL:0000945,6.17e-11,24;CL:0000826,6.17e-11,24;CL:0000084,6.38e-11,25;CL:0000827,6.38e-11,25;CL:0000625,5.73e-08,11;CL:0000236,7.17e-08,14;CL:0000557,7.21e-08,67;CL:0000766,7.51e-08,72;CL:0000839,8.91e-08,66;CL:0002194,6.43e-07,59;CL:0000576,6.43e-07,59;CL:0000040,6.43e-07,59;CL:0000559,6.43e-07,59 | |||
|ontology_enrichment_development_v019=CL:0000051;3.24e-13;53!CL:0000790;9.12e-12;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!5.47e-25!115;UBERON:0001049!2.87e-22!57;UBERON:0005068!2.87e-22!57;UBERON:0006241!2.87e-22!57;UBERON:0007135!2.87e-22!57;UBERON:0001017!2.44e-21!82;UBERON:0002616!3.31e-21!59;UBERON:0002780!5.73e-21!41;UBERON:0001890!5.73e-21!41;UBERON:0006240!5.73e-21!41;UBERON:0003080!1.34e-20!42;UBERON:0000955!3.47e-20!69;UBERON:0006238!3.47e-20!69;UBERON:0005743!3.32e-19!86;UBERON:0000073!2.20e-18!94;UBERON:0001016!2.20e-18!94;UBERON:0001893!2.90e-18!34;UBERON:0001869!6.21e-18!32;UBERON:0002020!6.44e-18!34;UBERON:0003528!6.44e-18!34;UBERON:0002791!1.07e-17!33;UBERON:0002619!2.47e-14!22;UBERON:0000956!5.80e-14!25;UBERON:0000203!5.80e-14!25;UBERON:0001950!1.90e-13!20;UBERON:0002346!7.29e-13!90;UBERON:0003075!7.98e-13!86;UBERON:0007284!7.98e-13!86;UBERON:0002193!1.31e-11!112;UBERON:0003056!1.94e-10!61;UBERON:0002390!3.81e-10!102;UBERON:0003061!3.81e-10!102;UBERON:0000153!5.51e-08!129;UBERON:0007811!5.51e-08!129;UBERON:0002405!1.51e-07!115 | |||
|ontology_enrichment_uberon_v019=UBERON:0001869;7.73e-17;32!UBERON:0002791;1.67e-16;32!UBERON:0001893;2.09e-16;34!UBERON:0003528;3.87e-16;34!UBERON:0002020;3.87e-16;34!UBERON:0002780;7.57e-16;41!UBERON:0001890;7.57e-16;41!UBERON:0002619;7.54e-15;22!UBERON:0000956;2.12e-14;25!UBERON:0000203;2.12e-14;25!UBERON:0001950;6.47e-14;20!UBERON:0000073;3.51e-13;53!UBERON:0002616;3.51e-13;53!UBERON:0000955;3.91e-10;68!UBERON:0001017;5.70e-10;75!UBERON:0001016;3.49e-09;83!UBERON:0007023;1.98e-07;114 | |||
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| ||
|short_description=p2@SYNE1 | |||
}} | }} |
Latest revision as of 06:34, 16 September 2015
Short description: | p2@SYNE1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_SYNE1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000537033, ENST00000540663, uc010kiy.1_5end |
EntrezGene: | SYNE1 |
HGNC: | 17089 |
UniProt: | F5GZ83F5H6R8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
nongranular leukocyte | 2.46e-27 | 115 |
leukocyte | 8.98e-27 | 136 |
hematopoietic lineage restricted progenitor cell | 7.13e-26 | 120 |
lymphoid lineage restricted progenitor cell | 2.70e-22 | 52 |
lymphocyte | 4.42e-22 | 53 |
common lymphoid progenitor | 4.42e-22 | 53 |
hematopoietic stem cell | 9.86e-22 | 168 |
hematopoietic oligopotent progenitor cell | 2.84e-19 | 161 |
hematopoietic multipotent progenitor cell | 2.84e-19 | 161 |
hematopoietic cell | 6.24e-19 | 177 |
mature alpha-beta T cell | 1.21e-11 | 18 |
alpha-beta T cell | 1.21e-11 | 18 |
immature T cell | 1.21e-11 | 18 |
mature T cell | 1.21e-11 | 18 |
immature alpha-beta T cell | 1.21e-11 | 18 |
lymphocyte of B lineage | 6.17e-11 | 24 |
pro-B cell | 6.17e-11 | 24 |
T cell | 6.38e-11 | 25 |
pro-T cell | 6.38e-11 | 25 |
CD8-positive, alpha-beta T cell | 5.73e-08 | 11 |
B cell | 7.17e-08 | 14 |
granulocyte monocyte progenitor cell | 7.21e-08 | 67 |
myeloid leukocyte | 7.51e-08 | 72 |
myeloid lineage restricted progenitor cell | 8.91e-08 | 66 |
monopoietic cell | 6.43e-07 | 59 |
monocyte | 6.43e-07 | 59 |
monoblast | 6.43e-07 | 59 |
promonocyte | 6.43e-07 | 59 |
Ontology term | p-value | n |
---|---|---|
adult organism | 5.56e-25 | 114 |
neural tube | 6.31e-23 | 56 |
neural rod | 6.31e-23 | 56 |
future spinal cord | 6.31e-23 | 56 |
neural keel | 6.31e-23 | 56 |
regional part of nervous system | 1.84e-22 | 53 |
regional part of brain | 1.84e-22 | 53 |
regional part of forebrain | 1.34e-21 | 41 |
forebrain | 1.34e-21 | 41 |
anterior neural tube | 1.34e-21 | 41 |
future forebrain | 1.34e-21 | 41 |
central nervous system | 2.11e-21 | 81 |
nervous system | 2.03e-20 | 89 |
brain | 2.28e-20 | 68 |
future brain | 2.28e-20 | 68 |
telencephalon | 8.30e-19 | 34 |
cerebral hemisphere | 1.82e-18 | 32 |
brain grey matter | 1.89e-18 | 34 |
gray matter | 1.89e-18 | 34 |
regional part of telencephalon | 5.11e-18 | 32 |
regional part of cerebral cortex | 9.50e-15 | 22 |
cerebral cortex | 2.29e-14 | 25 |
pallium | 2.29e-14 | 25 |
neocortex | 7.79e-14 | 20 |
hemolymphoid system | 1.11e-13 | 108 |
neural plate | 2.64e-13 | 82 |
presumptive neural plate | 2.64e-13 | 82 |
neurectoderm | 3.40e-13 | 86 |
hematopoietic system | 2.82e-12 | 98 |
blood island | 2.82e-12 | 98 |
pre-chordal neural plate | 8.13e-12 | 61 |
immune system | 1.02e-10 | 93 |
bone marrow | 2.13e-07 | 76 |
bone element | 5.81e-07 | 82 |
ecto-epithelium | 8.58e-07 | 104 |