FFCP PHASE1:Hg19::chr2:109237690..109237715,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3987 | |EntrezGene=3987 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6616 | |HGNC=6616 | ||
|TSSclassifier=strong | |||
|UniProt=B7Z907 | |UniProt=B7Z907 | ||
|association_with_transcript=0bp_to_ENST00000449684,NM_001193484,uc002tej.2_5end | |association_with_transcript=0bp_to_ENST00000449684,NM_001193484,uc002tej.2_5end | ||
|cluster_id=chr2:109237690..109237715,+ | |||
|coexpression_cluster_id=C854 | |||
|description=CAGE_peak_4_at_LIMS1_5end | |description=CAGE_peak_4_at_LIMS1_5end | ||
|id=chr2:109237690..109237715,+ | |id=chr2:109237690..109237715,+ | ||
|ontology_enrichment_celltype=CL:0000542!2.69e-17!53;CL:0000051!2.69e-17!53;CL:0000838!6.95e-17!52;CL:0000791!8.37e-13!18;CL:0000789!8.37e-13!18;CL:0002420!8.37e-13!18;CL:0002419!8.37e-13!18;CL:0000790!8.37e-13!18;CL:0000084!4.11e-12!25;CL:0000827!4.11e-12!25;CL:0000738!6.79e-11!140;CL:0002076!3.72e-10!43;CL:0002087!5.28e-09!119;CL:0000625!4.48e-08!11;CL:0000037!5.11e-08!172;CL:0000566!5.11e-08!172;CL:0002032!9.63e-08!165;CL:0000837!9.63e-08!165;CL:0000066!2.57e-07!254;CL:0002031!2.87e-07!124;CL:0000988!5.29e-07!182 | |ontology_enrichment_celltype=CL:0000542!2.69e-17!53;CL:0000051!2.69e-17!53;CL:0000838!6.95e-17!52;CL:0000791!8.37e-13!18;CL:0000789!8.37e-13!18;CL:0002420!8.37e-13!18;CL:0002419!8.37e-13!18;CL:0000790!8.37e-13!18;CL:0000084!4.11e-12!25;CL:0000827!4.11e-12!25;CL:0000738!6.79e-11!140;CL:0002076!3.72e-10!43;CL:0002087!5.28e-09!119;CL:0000625!4.48e-08!11;CL:0000037!5.11e-08!172;CL:0000566!5.11e-08!172;CL:0002032!9.63e-08!165;CL:0000837!9.63e-08!165;CL:0000066!2.57e-07!254;CL:0002031!2.87e-07!124;CL:0000988!5.29e-07!182 | ||
|ontology_enrichment_celltype_v019=CL:0000791;1.95e-17;18!CL:0000789;1.95e-17;18!CL:0002419;1.95e-17;18!CL:0000084;7.05e-16;25!CL:0000625;9.19e-11;11!CL:0000542;4.40e-10;53!CL:0000624;1.79e-07;6!CL:0002076;5.27e-07;42!CL:0002368;8.52e-07;13 | |||
|ontology_enrichment_celltype_v019_2=CL:0000542,3.71e-18,53;CL:0000051,3.71e-18,53;CL:0000838,1.32e-17,52;CL:0000791,2.02e-17,18;CL:0000789,2.02e-17,18;CL:0002420,2.02e-17,18;CL:0002419,2.02e-17,18;CL:0000790,2.02e-17,18;CL:0000084,5.25e-16,25;CL:0000827,5.25e-16,25;CL:0000625,9.38e-11,11;CL:0000738,9.74e-09,136;CL:0002076,3.80e-08,42;CL:0000624,1.76e-07,6;CL:0002087,7.89e-07,115;CL:0002368,8.53e-07,13 | |||
|ontology_enrichment_development_v019=CL:0000790;1.95e-17;18!CL:0000051;4.40e-10;53 | |||
|ontology_enrichment_disease=DOID:1749!5.15e-08!14 | |ontology_enrichment_disease=DOID:1749!5.15e-08!14 | ||
|ontology_enrichment_disease_v019=DOID:1749;8.14e-10;14 | |||
|ontology_enrichment_disease_v019_2=DOID:1749,8.95e-10,14 | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;7.52e-08;15!UBERON:0000179;7.52e-08;15!UBERON:0000463;7.52e-08;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000974,2.12e-08,10;UBERON:0000178,5.63e-08,15;UBERON:0000179,5.63e-08,15;UBERON:0000463,5.63e-08,15;UBERON:0004119,5.21e-07,160;UBERON:0000925,5.21e-07,160;UBERON:0006595,5.21e-07,160;UBERON:0001004,5.71e-07,74 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,2.94880723801811,0.697801167972428,0.873765488520689,0.527533956456907,0,0,0,0,0,0,0,0,0,0,0.136874425072884,0,7.64134057479513,5.09023654589664,6.92654875560377,1.18009283054671,1.15148819429164,0.77408061658038,2.75826367343678,1.50602959389125,2.9580320813343,0.92960640696362,1.70603078984906,0,1.66198622559563,1.00272223735071,0.651032612147555,0,3.56283032620878,1.80302897343931,0.145398238779565,0.377875943688809,0,0.697287110717054,0.822335776043652,0.929119112685311,0.28769239232215,0.768482119587302,0.236482229888585,0.344745680736619,0,1.35426486594342,0.376484679085209,0,1.57306439111559,0.306083892370903,0.320929027076094,3.19668562899521,0.329851300186716,0,0,0,0,0.622822248995575,0,0,0,0.605399502633369,0.368277635987565,1.58231193720442,0.211255286311942,0,0,0.112328631146495,0,0,0,0,0,3.51992488922645,2.18455444504853,1.77901850772711,4.26730222566507,1.60158394814405,2.29900975981793,1.32208974556972,0,0.569212969109448,0.587237189370939,0.764546456250458,1.32171328579026,0,0.526768169550154,10.622327586147,7.8602152549833,15.2145109259637,20.0623794468814,6.8443675993054,8.04861269749047,1.94826728407911,51.5830415378354,23.2738666905121,26.5840673500345,21.6643091012012,28.0519990199229,25.7517508168559,5.75532666112866,7.18510046243206,15.3595635439578,10.5283459845063,8.02622484269139,2.09071047609954,41.1312913992165,34.8730649177748,43.2970581308114,40.230131031101,19.4324902737699,9.76625180784628,12.3558765778289,14.4552114314662,13.9505406158316,14.9916871862815,20.1260664237414,10.6746639599736,3.42731463482045,1.60464117470104,1.30341963494519,0,0,0,0,0,0,0,0,0.378139268656271,0.221729397462564,0.175669571386252,0.916853528483988,1.09288586487763,1.11235332835329,0,0.348259474598534,0.26591592103773,0.238490624305342,0,0,0,0,0,0,0,0,0,0,0,0.66944122552934,0.402829317109147,2.28081631715554,0.732186172644509,0,0,0.357198913136319,0,0.225222960966644,0,0,0,1.31780417436063,3.87780264148325,1.3082821564276,0,0,0,0,0,0,0,0.49333509683432,0,0,0,0,0.576175924479999,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.05847791642923,4.90943017063502,5.73609190778008,0.243947412259191,0.397589304964456,0.232387885739037,0.414644220061482,1.00928340350251,0.72995471815166,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.441463099414651,1.22988438543114,0.171567810298526,3.95101027471052,1.1240175325762,3.41798506199545,9.16625607069443,0,0,0,0,0,0.288732895522148,0.925971025153221,0.380508304469197,0,0,0,0.234004265139238,0,4.68669169933885,8.39910640994298,5.95455408418023,3.67189943081678,2.03443756959773,0.766765358330422,0,0,0,0.144119953416961,0.12624243342638,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.325736184293735,0,0,0,0.871533458600294,0.099972991182057,0,0,0,0,0,0,0,0,0,6.05259777565047,3.74358444383662,4.09692392233083,3.08023287071396,0,0,0,0,0,2.99602809578873,0,2.90090859405225,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,10.1316332800215,1.94142780736755,4.69601254335155,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.241718899183244,8.62177822304125,2.11786274552562,0,0,0,0.451199612907412,1.69433741629712,0.784349769176855,1.46139224653261,6.64975262025117,0,0.170093705276516,1.51141141271498,0,2.98041081298238,0.501689773854853,4.07802036872061,4.98645605357235,1.34324852833307,0,0,0,0,0,1.13345112812495,0,0,2.87132768998086,1.95018073810956,0,0,0,0,0,0,0,0,0,12.3963686520734,4.03599141466723,5.10450849978336,4.046311234222,0,0,0,0,0,0,0,0,0,0.316379424718726,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.5808825380797,2.68120910214315,2.17781969722645,1.03558180854457,1.72202149068492,5.05414427002877,2.66058092122005,14.4725742130384,5.58192370155386,10.7049208999933,3.98753031021914,8.33811214102261,7.4045209155515,9.07862635669804,8.10047155857172,4.75875105776562,0.106824071127473,0,4.90080431962063,2.78704762688578,0,1.63626239701352,8.60901872735641,0.798317485731266,0.191505370132367,2.96343015813436,0.324621940274555,0,0.228234679033192,0,0,0.677167111206413,0,0,0,0,0,0,0,0,1.39203086947621,0,0,0.66614393599564,0,0,0.439524537815682,0.970884173996107,0.780103689942349,0,0.23874448473769,3.26661148915902,1.22864280839693,0,0,8.45946158174085,0,19.4235375477754,1.79323189425963,3.59169090190492,51.6462133101266,0.102268682502155,12.431565351568,0,2.06697207638852,1.9692329214317,0,2.86065876347107,2.3948309234694,0,0,0.0927680981618513,0,0,0,0,5.46208551770398,0,0,0.344743373241465,0,0.520874984799877,0,0,0,0,0,0,0,0.975966209950223,1.00035336054936,0,0,0.179515288819544,0,0.31900115973192,0.274792780205587,0,0,0.156980256395025,0.332423363800313,0,0.588187602953219,0.503464760927528,0.569261198172555,0.476809736941136,9.28391483923319,18.9350057464611,0.424059214301822,0.865554558968364,1.99052386215701,0.707660516026713,0.611030144933625,0,0,0,0.269604531922708,1.60515529459758,0,0.182454789215666,2.54364004611717,1.21390189767046,24.8588173795116,2.41981432097328,0.30607276163049,0.126373159256976,0.150323419414493,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| ||
|short_description=p4@LIMS1 | |short_description=p4@LIMS1 | ||
}} | }} |
Latest revision as of 06:32, 16 September 2015
Short description: | p4@LIMS1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_LIMS1_5end |
Coexpression cluster: | C854_argyrophil_CD4_anaplastic_smallcell_nonsmall_seminal_CD8 |
Association with transcript: | 0bp_to_ENST00000449684, NM_001193484, uc002tej.2_5end |
EntrezGene: | LIMS1 |
HGNC: | 6616 |
UniProt: | B7Z907 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte | 3.71e-18 | 53 |
common lymphoid progenitor | 3.71e-18 | 53 |
lymphoid lineage restricted progenitor cell | 1.32e-17 | 52 |
mature alpha-beta T cell | 2.02e-17 | 18 |
alpha-beta T cell | 2.02e-17 | 18 |
immature T cell | 2.02e-17 | 18 |
mature T cell | 2.02e-17 | 18 |
immature alpha-beta T cell | 2.02e-17 | 18 |
T cell | 5.25e-16 | 25 |
pro-T cell | 5.25e-16 | 25 |
CD8-positive, alpha-beta T cell | 9.38e-11 | 11 |
leukocyte | 9.74e-09 | 136 |
endo-epithelial cell | 3.80e-08 | 42 |
CD4-positive, alpha-beta T cell | 1.76e-07 | 6 |
nongranular leukocyte | 7.89e-07 | 115 |
respiratory epithelial cell | 8.53e-07 | 13 |
Ontology term | p-value | n |
---|---|---|
neck | 2.12e-08 | 10 |
blood | 5.63e-08 | 15 |
haemolymphatic fluid | 5.63e-08 | 15 |
organism substance | 5.63e-08 | 15 |
endoderm-derived structure | 5.21e-07 | 160 |
endoderm | 5.21e-07 | 160 |
presumptive endoderm | 5.21e-07 | 160 |
respiratory system | 5.71e-07 | 74 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 8.95e-10 | 14 |