FFCP PHASE1:Hg19::chr1:114354876..114354922,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=54665 | |EntrezGene=54665 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=25642 | |HGNC=25642 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000476412_5end | |association_with_transcript=0bp_to_ENST00000476412_5end | ||
|cluster_id=chr1:114354876..114354922,- | |||
|coexpression_cluster_id=C867 | |coexpression_cluster_id=C867 | ||
|description=CAGE_peak_1_at_RSBN1_5end | |description=CAGE_peak_1_at_RSBN1_5end | ||
|id=chr1:114354876..114354922,- | |id=chr1:114354876..114354922,- | ||
|ontology_enrichment_celltype=CL:0000037!7.18e-21!172;CL:0000566!7.18e-21!172;CL:0000738!6.60e-19!140;CL:0002032!1.34e-18!165;CL:0000837!1.34e-18!165;CL:0000988!9.59e-17!182;CL:0000838!1.52e-15!52;CL:0000542!3.56e-15!53;CL:0000051!3.56e-15!53;CL:0002031!6.45e-14!124;CL:0002087!8.85e-13!119;CL:0000791!3.27e-11!18;CL:0000789!3.27e-11!18;CL:0002420!3.27e-11!18;CL:0002419!3.27e-11!18;CL:0000790!3.27e-11!18;CL:0000084!9.24e-09!25;CL:0000827!9.24e-09!25;CL:0000625!1.89e-07!11 | |ontology_enrichment_celltype=CL:0000037!7.18e-21!172;CL:0000566!7.18e-21!172;CL:0000738!6.60e-19!140;CL:0002032!1.34e-18!165;CL:0000837!1.34e-18!165;CL:0000988!9.59e-17!182;CL:0000838!1.52e-15!52;CL:0000542!3.56e-15!53;CL:0000051!3.56e-15!53;CL:0002031!6.45e-14!124;CL:0002087!8.85e-13!119;CL:0000791!3.27e-11!18;CL:0000789!3.27e-11!18;CL:0002420!3.27e-11!18;CL:0002419!3.27e-11!18;CL:0000790!3.27e-11!18;CL:0000084!9.24e-09!25;CL:0000827!9.24e-09!25;CL:0000625!1.89e-07!11 | ||
|ontology_enrichment_celltype_v019=CL:0000791;3.20e-11;18!CL:0000789;3.20e-11;18!CL:0002419;3.20e-11;18!CL:0000542;4.58e-09;53!CL:0000084;9.87e-09;25!CL:0000625;1.92e-07;11 | |||
|ontology_enrichment_celltype_v019_2=CL:0000037,4.61e-21,168;CL:0000738,3.73e-19,136;CL:0002032,8.95e-19,161;CL:0000837,8.95e-19,161;CL:0000988,1.98e-17,177;CL:0000838,1.52e-15,52;CL:0000542,3.56e-15,53;CL:0000051,3.56e-15,53;CL:0002031,4.11e-14,120;CL:0002087,5.79e-13,115;CL:0000791,3.27e-11,18;CL:0000789,3.27e-11,18;CL:0002420,3.27e-11,18;CL:0002419,3.27e-11,18;CL:0000790,3.27e-11,18;CL:0000084,9.24e-09,25;CL:0000827,9.24e-09,25;CL:0000625,1.89e-07,11 | |||
|ontology_enrichment_development_v019=CL:0000790;3.20e-11;18!CL:0000051;4.58e-09;53 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!8.49e-30!115;UBERON:0001049!8.63e-12!57;UBERON:0005068!8.63e-12!57;UBERON:0006241!8.63e-12!57;UBERON:0007135!8.63e-12!57;UBERON:0001017!1.91e-11!82;UBERON:0003080!6.44e-11!42;UBERON:0002780!1.12e-10!41;UBERON:0001890!1.12e-10!41;UBERON:0006240!1.12e-10!41;UBERON:0005743!1.13e-10!86;UBERON:0000073!1.73e-10!94;UBERON:0001016!1.73e-10!94;UBERON:0000955!4.11e-10!69;UBERON:0006238!4.11e-10!69;UBERON:0002616!2.33e-09!59;UBERON:0001893!1.15e-08!34;UBERON:0002020!1.40e-08!34;UBERON:0003528!1.40e-08!34;UBERON:0002791!2.29e-08!33;UBERON:0001869!3.38e-08!32;UBERON:0002346!5.69e-08!90;UBERON:0002619!1.02e-07!22;UBERON:0003075!1.88e-07!86;UBERON:0007284!1.88e-07!86;UBERON:0001950!2.05e-07!20;UBERON:0000956!2.27e-07!25;UBERON:0000203!2.27e-07!25 | |ontology_enrichment_uberon=UBERON:0007023!8.49e-30!115;UBERON:0001049!8.63e-12!57;UBERON:0005068!8.63e-12!57;UBERON:0006241!8.63e-12!57;UBERON:0007135!8.63e-12!57;UBERON:0001017!1.91e-11!82;UBERON:0003080!6.44e-11!42;UBERON:0002780!1.12e-10!41;UBERON:0001890!1.12e-10!41;UBERON:0006240!1.12e-10!41;UBERON:0005743!1.13e-10!86;UBERON:0000073!1.73e-10!94;UBERON:0001016!1.73e-10!94;UBERON:0000955!4.11e-10!69;UBERON:0006238!4.11e-10!69;UBERON:0002616!2.33e-09!59;UBERON:0001893!1.15e-08!34;UBERON:0002020!1.40e-08!34;UBERON:0003528!1.40e-08!34;UBERON:0002791!2.29e-08!33;UBERON:0001869!3.38e-08!32;UBERON:0002346!5.69e-08!90;UBERON:0002619!1.02e-07!22;UBERON:0003075!1.88e-07!86;UBERON:0007284!1.88e-07!86;UBERON:0001950!2.05e-07!20;UBERON:0000956!2.27e-07!25;UBERON:0000203!2.27e-07!25 | ||
|ontology_enrichment_uberon_v019=UBERON:0007023;1.50e-08;114!UBERON:0002780;5.58e-08;41!UBERON:0001890;5.58e-08;41!UBERON:0002619;1.14e-07;22!UBERON:0001893;1.83e-07;34!UBERON:0002791;2.41e-07;32!UBERON:0001950;2.42e-07;20!UBERON:0001869;2.57e-07;32!UBERON:0000956;2.71e-07;25!UBERON:0000203;2.71e-07;25!UBERON:0003528;3.15e-07;34!UBERON:0002020;3.15e-07;34!UBERON:0000073;3.49e-07;53!UBERON:0002616;3.49e-07;53 | |||
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| ||
|short_description=p1@RSBN1 | |short_description=p1@RSBN1 | ||
}} | }} |
Latest revision as of 06:10, 16 September 2015
Short description: | p1@RSBN1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_RSBN1_5end |
Coexpression cluster: | C867_CD4_CD8_Natural_CD19_Peripheral_cerebellum_Mast |
Association with transcript: | 0bp_to_ENST00000476412_5end |
EntrezGene: | RSBN1 |
HGNC: | 25642 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic stem cell | 4.61e-21 | 168 |
leukocyte | 3.73e-19 | 136 |
hematopoietic oligopotent progenitor cell | 8.95e-19 | 161 |
hematopoietic multipotent progenitor cell | 8.95e-19 | 161 |
hematopoietic cell | 1.98e-17 | 177 |
lymphoid lineage restricted progenitor cell | 1.52e-15 | 52 |
lymphocyte | 3.56e-15 | 53 |
common lymphoid progenitor | 3.56e-15 | 53 |
hematopoietic lineage restricted progenitor cell | 4.11e-14 | 120 |
nongranular leukocyte | 5.79e-13 | 115 |
mature alpha-beta T cell | 3.27e-11 | 18 |
alpha-beta T cell | 3.27e-11 | 18 |
immature T cell | 3.27e-11 | 18 |
mature T cell | 3.27e-11 | 18 |
immature alpha-beta T cell | 3.27e-11 | 18 |
T cell | 9.24e-09 | 25 |
pro-T cell | 9.24e-09 | 25 |
CD8-positive, alpha-beta T cell | 1.89e-07 | 11 |
Ontology term | p-value | n |
---|---|---|
adult organism | 2.85e-29 | 114 |
neural tube | 1.50e-11 | 56 |
neural rod | 1.50e-11 | 56 |
future spinal cord | 1.50e-11 | 56 |
neural keel | 1.50e-11 | 56 |
central nervous system | 3.24e-11 | 81 |
regional part of nervous system | 4.56e-11 | 53 |
regional part of brain | 4.56e-11 | 53 |
nervous system | 5.75e-11 | 89 |
regional part of forebrain | 1.12e-10 | 41 |
forebrain | 1.12e-10 | 41 |
anterior neural tube | 1.12e-10 | 41 |
future forebrain | 1.12e-10 | 41 |
brain | 6.92e-10 | 68 |
future brain | 6.92e-10 | 68 |
telencephalon | 1.15e-08 | 34 |
brain grey matter | 1.40e-08 | 34 |
gray matter | 1.40e-08 | 34 |
cerebral hemisphere | 3.38e-08 | 32 |
regional part of telencephalon | 3.66e-08 | 32 |
neurectoderm | 5.88e-08 | 86 |
regional part of cerebral cortex | 1.02e-07 | 22 |
neural plate | 1.96e-07 | 82 |
presumptive neural plate | 1.96e-07 | 82 |
neocortex | 2.05e-07 | 20 |
cerebral cortex | 2.27e-07 | 25 |
pallium | 2.27e-07 | 25 |