FFCP PHASE1:Hg19::chr19:1490398..1490423,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(5 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=54760 | |EntrezGene=54760 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=8746 | |HGNC=8746 | ||
|TSSclassifier=strong | |||
|UniProt=Q6UW60,B3KQ28 | |UniProt=Q6UW60,B3KQ28 | ||
|association_with_transcript=0bp_to_ENST00000300954,NM_017573,uc002lta.2,uc002ltb.1_5end | |association_with_transcript=0bp_to_ENST00000300954,NM_017573,uc002lta.2,uc002ltb.1_5end | ||
|cluster_id=chr19:1490398..1490423,- | |||
|coexpression_cluster_id=C1 | |coexpression_cluster_id=C1 | ||
|description=CAGE_peak_3_at_PCSK4_5end | |description=CAGE_peak_3_at_PCSK4_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019= | |ontology_enrichment_celltype_v019= | ||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0009117;2.08e-27;10!UBERON:0005564;2.08e-27;10 | |ontology_enrichment_development_v019=UBERON:0009117;2.08e-27;10!UBERON:0005564;2.08e-27;10 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!4.14e-35!57;UBERON:0005068!4.14e-35!57;UBERON:0006241!4.14e-35!57;UBERON:0007135!4.14e-35!57;UBERON:0002780!7.82e-34!41;UBERON:0001890!7.82e-34!41;UBERON:0006240!7.82e-34!41;UBERON:0003080!7.49e-33!42;UBERON:0002616!3.34e-31!59;UBERON:0000955!1.05e-30!69;UBERON:0006238!1.05e-30!69;UBERON:0007023!1.07e-28!115;UBERON:0001017!6.50e-28!82;UBERON:0005743!1.07e-27!86;UBERON:0001893!1.22e-26!34;UBERON:0002346!3.10e-26!90;UBERON:0000073!1.55e-25!94;UBERON:0001016!1.55e-25!94;UBERON:0002791!8.86e-25!33;UBERON:0003075!1.25e-24!86;UBERON:0007284!1.25e-24!86;UBERON:0002020!8.36e-24!34;UBERON:0003528!8.36e-24!34;UBERON:0003056!1.31e-23!61;UBERON:0001869!3.13e-23!32;UBERON:0002619!2.21e-19!22;UBERON:0000956!5.67e-19!25;UBERON:0000203!5.67e-19!25;UBERON:0001950!1.40e-18!20;UBERON:0000153!2.69e-18!129;UBERON:0007811!2.69e-18!129;UBERON:0000033!1.95e-17!123;UBERON:0000924!2.41e-13!173;UBERON:0006601!2.41e-13!173;UBERON:0004121!3.26e-12!169;UBERON:0000025!1.59e-11!194;UBERON:0001871!2.85e-10!7;UBERON:0000200!1.10e-09!6;UBERON:0004111!1.69e-09!241;UBERON:0000477!1.88e-09!286;UBERON:0001894!1.06e-08!7;UBERON:0006222!1.06e-08!7;UBERON:0000483!1.04e-07!309;UBERON:0000119!1.63e-07!312;UBERON:0002771!1.79e-07!3;UBERON:0002046!4.81e-07!5;UBERON:0004117!4.81e-07!5;UBERON:0007689!4.81e-07!5;UBERON:0007123!4.81e-07!5;UBERON:0003091!4.81e-07!5;UBERON:0002298!6.47e-07!8;UBERON:0000481!8.65e-07!347 | |ontology_enrichment_uberon=UBERON:0001049!4.14e-35!57;UBERON:0005068!4.14e-35!57;UBERON:0006241!4.14e-35!57;UBERON:0007135!4.14e-35!57;UBERON:0002780!7.82e-34!41;UBERON:0001890!7.82e-34!41;UBERON:0006240!7.82e-34!41;UBERON:0003080!7.49e-33!42;UBERON:0002616!3.34e-31!59;UBERON:0000955!1.05e-30!69;UBERON:0006238!1.05e-30!69;UBERON:0007023!1.07e-28!115;UBERON:0001017!6.50e-28!82;UBERON:0005743!1.07e-27!86;UBERON:0001893!1.22e-26!34;UBERON:0002346!3.10e-26!90;UBERON:0000073!1.55e-25!94;UBERON:0001016!1.55e-25!94;UBERON:0002791!8.86e-25!33;UBERON:0003075!1.25e-24!86;UBERON:0007284!1.25e-24!86;UBERON:0002020!8.36e-24!34;UBERON:0003528!8.36e-24!34;UBERON:0003056!1.31e-23!61;UBERON:0001869!3.13e-23!32;UBERON:0002619!2.21e-19!22;UBERON:0000956!5.67e-19!25;UBERON:0000203!5.67e-19!25;UBERON:0001950!1.40e-18!20;UBERON:0000153!2.69e-18!129;UBERON:0007811!2.69e-18!129;UBERON:0000033!1.95e-17!123;UBERON:0000924!2.41e-13!173;UBERON:0006601!2.41e-13!173;UBERON:0004121!3.26e-12!169;UBERON:0000025!1.59e-11!194;UBERON:0001871!2.85e-10!7;UBERON:0000200!1.10e-09!6;UBERON:0004111!1.69e-09!241;UBERON:0000477!1.88e-09!286;UBERON:0001894!1.06e-08!7;UBERON:0006222!1.06e-08!7;UBERON:0000483!1.04e-07!309;UBERON:0000119!1.63e-07!312;UBERON:0002771!1.79e-07!3;UBERON:0002046!4.81e-07!5;UBERON:0004117!4.81e-07!5;UBERON:0007689!4.81e-07!5;UBERON:0007123!4.81e-07!5;UBERON:0003091!4.81e-07!5;UBERON:0002298!6.47e-07!8;UBERON:0000481!8.65e-07!347 | ||
|ontology_enrichment_uberon_v019=UBERON:0000473;6.50e-34;8!UBERON:0003135;4.86e-25;11!UBERON:0000991;1.02e-13;21!UBERON:0003101;3.77e-13;22!UBERON:0000079;3.77e-13;22 | |ontology_enrichment_uberon_v019=UBERON:0000473;6.50e-34;8!UBERON:0003135;4.86e-25;11!UBERON:0000991;1.02e-13;21!UBERON:0003101;3.77e-13;22!UBERON:0000079;3.77e-13;22 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0000473,6.50e-34,8;UBERON:0003135,4.86e-25,11;UBERON:0000991,1.02e-13,21;UBERON:0009196,1.02e-13,21;UBERON:0009117,1.02e-13,21;UBERON:0005564,1.02e-13,21;UBERON:0004176,3.77e-13,22;UBERON:0003101,3.77e-13,22;UBERON:0000079,3.77e-13,22;UBERON:0002323,7.30e-07,46 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.125542639594803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.267540828089713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,10.4128365020682,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.402829317109147,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179389635688862,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.10366105501537,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117408694235822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102827492703324,0,0.285826432630578,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.254094624222463,0,0,0,0,0,0,0,0,0,0.271265023699736,0,0,0.315404830067869,0,0,0,0,0,0,0,0,0,0,0,0,0.303127571446259,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.131124414959424,0,0.0770153371044148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.31481234683064,0,0,0,0,0.18532421910392,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.36408156524854,0.111443384277478,0,0,0,0,0,0.422008249231538,0.111308705022906,0,0,0,0,0,0,0,0,0,0,0,0.0986434056369336,0,0,0,0.649376687132959,0,0,0,0,0,0,0,0,0,0,0,0.60298219312704,0,0.110579259931225,0,0,0,0,0,0.113942055847001,0,0,0,0,0,0,0,0.156980256395025,0,0,0,0,0,0,0,0.326465616318295,0,0,0,0,0,0,0,0,0.606610196826093,0,0.702793337176017,0,0,0,0,0,0.30607276163049,0,0,0,0,0,0,0,0,0,0,0,0,0.52418000472609,0,0,0,0,0.193978032976839,0.0882561266915003,0.451961481561065,0,0,0.50648636764703,0,0,0,0.19980960958213,0,0,0,0,0,0,0.135904206073614,0.209205692624666,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0671834724867263,0,0,0.0787831823072236,0,0.13480708770837,0,0.0846733320657845,0,0.408610218334727,0,0,0,0,0,0.0607495566580247,0,0,0.157363764404994,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.387848869084652,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122026264901963,0.3755727921195,0,0.887432412294818,0.248385611765534,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.151230923763239,0,0,0.159296767163702,0,0.155262956876259,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.276516872303462,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.169732529954025,0,0,0,0,0,0,0,0,0.192687675289379,0,0.319267718114302,0.41023272848151,0,0.138314504928436,0.484426936895553,0,0,0,0,0,0,0,0,0.0752103283492573,0,0,0,0,0,0.540300676947157,0,0.413373593002368,0.253663240775627,0,0,0,0.175871244359621,0,0,0.336283722218824,0,0.227662191351298,0,0,0,0.0679697329768317,0.263091094251396,0,0,0.078493092850514,0.314231179832004,0,0,0,0,0.0714765441766563,0,0,0,0,0,0,0,0,0,0.0852134047591577,0,0,0,0,0,0,0,0,0,0,0,0,0.198950775161368,0.118920090777569,0,0,0,0,0,0,0,0.235676547101626,0,0,0.4226557275834,0,0,0,0,0,0,0.160482733378337,0,0.458729283404541,0.143339583151451,0,0.543931921527318,0,0,0,0,0,0,0,0,0,0,0,0,19.626682838524,20.9012021521819,0.829169439458779,0.310298987585686,0.213233981900981,0,0,0.0620747142958579,0.112131862580613,0.12729431655633,0.404234377916439,0,0,0,0.286888821570705,0,0,0,0,0,0,0.244482888365733,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.125542639594803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.267540828089713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,10.4128365020682,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.402829317109147,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179389635688862,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.10366105501537,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117408694235822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102827492703324,0,0.285826432630578,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.254094624222463,0,0,0,0,0,0,0,0,0,0.271265023699736,0,0,0.315404830067869,0,0,0,0,0,0,0,0,0,0,0,0,0.303127571446259,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.131124414959424,0,0.0770153371044148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.31481234683064,0,0,0,0,0.18532421910392,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.36408156524854,0.111443384277478,0,0,0,0,0,0.422008249231538,0.111308705022906,0,0,0,0,0,0,0,0,0,0,0,0.0986434056369336,0,0,0,0.649376687132959,0,0,0,0,0,0,0,0,0,0,0,0.60298219312704,0,0.110579259931225,0,0,0,0,0,0.113942055847001,0,0,0,0,0,0,0,0.156980256395025,0,0,0,0,0,0,0,0.326465616318295,0,0,0,0,0,0,0,0,0.606610196826093,0,0.702793337176017,0,0,0,0,0,0.30607276163049,0,0,0,0,0,0,0,0,0,0,0,0,0.52418000472609,0,0,0,0,0.193978032976839,0.0882561266915003,0.451961481561065,0,0,0.50648636764703,0,0,0,0.19980960958213,0,0,0,0,0,0,0.135904206073614,0.209205692624666,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0671834724867263,0,0,0.0787831823072236,0,0.13480708770837,0,0.0846733320657845,0,0.408610218334727,0,0,0,0,0,0.0607495566580247,0,0,0.157363764404994,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.387848869084652,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122026264901963,0.3755727921195,0,0.887432412294818,0.248385611765534,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.151230923763239,0,0,0.159296767163702,0,0.155262956876259,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.276516872303462,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.169732529954025,0,0,0,0,0,0,0,0,0.192687675289379,0,0.319267718114302,0.41023272848151,0,0.138314504928436,0.484426936895553,0,0,0,0,0,0,0,0,0.0752103283492573,0,0,0,0,0,0.540300676947157,0,0.413373593002368,0.253663240775627,0,0,0,0.175871244359621,0,0,0.336283722218824,0,0.227662191351298,0,0,0,0.0679697329768317,0.263091094251396,0,0,0.078493092850514,0.314231179832004,0,0,0,0,0.0714765441766563,0,0,0,0,0,0,0,0,0,0.0852134047591577,0,0,0,0,0,0,0,0,0,0,0,0,0.198950775161368,0.118920090777569,0,0,0,0,0,0,0,0.235676547101626,0,0,0.4226557275834,0,0,0,0,0,0,0.160482733378337,0,0.458729283404541,0.143339583151451,0,0.543931921527318,0,0,0,0,0,0,0,0,0,0,0,0,19.626682838524,20.9012021521819,0.829169439458779,0.310298987585686,0.213233981900981,0,0,0.0620747142958579,0.112131862580613,0.12729431655633,0.404234377916439,0,0,0,0.286888821570705,0,0,0,0,0,0,0.244482888365733,0,0,0,0 | ||
|short_description=p3@PCSK4 | |short_description=p3@PCSK4 | ||
}} | }} |
Latest revision as of 06:10, 16 September 2015
Short description: | p3@PCSK4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_PCSK4_5end |
Coexpression cluster: | C1_testis_epididymis_embryonic_medulla_pituitary_trachea_caudate |
Association with transcript: | 0bp_to_ENST00000300954, NM_017573, uc002lta.2, uc002ltb.1_5end |
EntrezGene: | PCSK4 |
HGNC: | 8746 |
UniProt: | Q6UW60B3KQ28 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
testis | 6.50e-34 | 8 |
male reproductive organ | 4.86e-25 | 11 |
gonad | 1.02e-13 | 21 |
indifferent external genitalia | 1.02e-13 | 21 |
indifferent gonad | 1.02e-13 | 21 |
gonad primordium | 1.02e-13 | 21 |
external genitalia | 3.77e-13 | 22 |
male organism | 3.77e-13 | 22 |
male reproductive system | 3.77e-13 | 22 |
body cavity | 7.30e-07 | 46 |