FFCP PHASE1:Hg19::chr19:1490316..1490360,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=54760 | |EntrezGene=54760 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=8746 | |HGNC=8746 | ||
|TSSclassifier=strong | |||
|UniProt=B3KQ28 | |UniProt=B3KQ28 | ||
|association_with_transcript=0bp_to_ENST00000441747_5end | |association_with_transcript=0bp_to_ENST00000441747_5end | ||
|cluster_id=chr19:1490316..1490360,- | |||
|coexpression_cluster_id=C1 | |coexpression_cluster_id=C1 | ||
|description=CAGE_peak_1_at_PCSK4_5end | |description=CAGE_peak_1_at_PCSK4_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019= | |ontology_enrichment_celltype_v019= | ||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002346!1.78e-14!90;UBERON:0000073!1.50e-13!94;UBERON:0001016!1.50e-13!94;UBERON:0003056!5.60e-13!61;UBERON:0005743!7.75e-13!86;UBERON:0003075!8.20e-13!86;UBERON:0007284!8.20e-13!86;UBERON:0001017!2.67e-11!82;UBERON:0001049!3.05e-11!57;UBERON:0005068!3.05e-11!57;UBERON:0006241!3.05e-11!57;UBERON:0007135!3.05e-11!57;UBERON:0003080!5.49e-11!42;UBERON:0000955!5.76e-11!69;UBERON:0006238!5.76e-11!69;UBERON:0002780!8.43e-11!41;UBERON:0001890!8.43e-11!41;UBERON:0006240!8.43e-11!41;UBERON:0000924!2.99e-10!173;UBERON:0006601!2.99e-10!173;UBERON:0000153!3.93e-10!129;UBERON:0007811!3.93e-10!129;UBERON:0001893!5.18e-10!34;UBERON:0000033!9.40e-10!123;UBERON:0002020!9.94e-10!34;UBERON:0003528!9.94e-10!34;UBERON:0002791!1.07e-09!33;UBERON:0001869!2.45e-09!32;UBERON:0004121!4.64e-09!169;UBERON:0007023!9.98e-09!115;UBERON:0002616!1.07e-08!59;UBERON:0000956!7.33e-07!25;UBERON:0000203!7.33e-07!25 | |ontology_enrichment_uberon=UBERON:0002346!1.78e-14!90;UBERON:0000073!1.50e-13!94;UBERON:0001016!1.50e-13!94;UBERON:0003056!5.60e-13!61;UBERON:0005743!7.75e-13!86;UBERON:0003075!8.20e-13!86;UBERON:0007284!8.20e-13!86;UBERON:0001017!2.67e-11!82;UBERON:0001049!3.05e-11!57;UBERON:0005068!3.05e-11!57;UBERON:0006241!3.05e-11!57;UBERON:0007135!3.05e-11!57;UBERON:0003080!5.49e-11!42;UBERON:0000955!5.76e-11!69;UBERON:0006238!5.76e-11!69;UBERON:0002780!8.43e-11!41;UBERON:0001890!8.43e-11!41;UBERON:0006240!8.43e-11!41;UBERON:0000924!2.99e-10!173;UBERON:0006601!2.99e-10!173;UBERON:0000153!3.93e-10!129;UBERON:0007811!3.93e-10!129;UBERON:0001893!5.18e-10!34;UBERON:0000033!9.40e-10!123;UBERON:0002020!9.94e-10!34;UBERON:0003528!9.94e-10!34;UBERON:0002791!1.07e-09!33;UBERON:0001869!2.45e-09!32;UBERON:0004121!4.64e-09!169;UBERON:0007023!9.98e-09!115;UBERON:0002616!1.07e-08!59;UBERON:0000956!7.33e-07!25;UBERON:0000203!7.33e-07!25 | ||
|ontology_enrichment_uberon_v019=UBERON:0003528;2.90e-09;34!UBERON:0002020;2.90e-09;34!UBERON:0001893;3.70e-09;34!UBERON:0002791;3.82e-09;32!UBERON:0001869;4.11e-09;32!UBERON:0002780;9.87e-09;41!UBERON:0001890;9.87e-09;41!UBERON:0002619;3.01e-07;22!UBERON:0001950;3.64e-07;20!UBERON:0000956;3.75e-07;25!UBERON:0000203;3.75e-07;25!UBERON:0000073;4.18e-07;53!UBERON:0002616;4.18e-07;53 | |ontology_enrichment_uberon_v019=UBERON:0003528;2.90e-09;34!UBERON:0002020;2.90e-09;34!UBERON:0001893;3.70e-09;34!UBERON:0002791;3.82e-09;32!UBERON:0001869;4.11e-09;32!UBERON:0002780;9.87e-09;41!UBERON:0001890;9.87e-09;41!UBERON:0002619;3.01e-07;22!UBERON:0001950;3.64e-07;20!UBERON:0000956;3.75e-07;25!UBERON:0000203;3.75e-07;25!UBERON:0000073;4.18e-07;53!UBERON:0002616;4.18e-07;53 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0002346,3.62e-16,86;UBERON:0003056,1.74e-15,61;UBERON:0001016,2.75e-14,89;UBERON:0003075,4.60e-14,82;UBERON:0007284,4.60e-14,82;UBERON:0002780,3.82e-13,41;UBERON:0001890,3.82e-13,41;UBERON:0003080,3.82e-13,41;UBERON:0006240,3.82e-13,41;UBERON:0001017,5.65e-13,81;UBERON:0000955,1.08e-12,68;UBERON:0006238,1.08e-12,68;UBERON:0001049,1.23e-12,56;UBERON:0005068,1.23e-12,56;UBERON:0006241,1.23e-12,56;UBERON:0007135,1.23e-12,56;UBERON:0001893,3.74e-12,34;UBERON:0000073,3.95e-12,53;UBERON:0002616,3.95e-12,53;UBERON:0003528,8.68e-12,34;UBERON:0002020,8.68e-12,34;UBERON:0001869,2.89e-11,32;UBERON:0004121,3.20e-11,171;UBERON:0000924,3.20e-11,171;UBERON:0006601,3.20e-11,171;UBERON:0002791,3.63e-11,32;UBERON:0010371,1.43e-10,104;UBERON:0007023,1.21e-09,114;UBERON:0000956,4.91e-08,25;UBERON:0000203,4.91e-08,25;UBERON:0002619,5.05e-08,22;UBERON:0001950,5.55e-08,20;UBERON:0010314,7.69e-07,132 | |||
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| ||
|short_description=p1@PCSK4 | |short_description=p1@PCSK4 | ||
}} | }} |
Latest revision as of 06:09, 16 September 2015
Short description: | p1@PCSK4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_PCSK4_5end |
Coexpression cluster: | C1_testis_epididymis_embryonic_medulla_pituitary_trachea_caudate |
Association with transcript: | 0bp_to_ENST00000441747_5end |
EntrezGene: | PCSK4 |
HGNC: | 8746 |
UniProt: | B3KQ28 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neurectoderm | 3.62e-16 | 86 |
pre-chordal neural plate | 1.74e-15 | 61 |
nervous system | 2.75e-14 | 89 |
neural plate | 4.60e-14 | 82 |
presumptive neural plate | 4.60e-14 | 82 |
regional part of forebrain | 3.82e-13 | 41 |
forebrain | 3.82e-13 | 41 |
anterior neural tube | 3.82e-13 | 41 |
future forebrain | 3.82e-13 | 41 |
central nervous system | 5.65e-13 | 81 |
brain | 1.08e-12 | 68 |
future brain | 1.08e-12 | 68 |
neural tube | 1.23e-12 | 56 |
neural rod | 1.23e-12 | 56 |
future spinal cord | 1.23e-12 | 56 |
neural keel | 1.23e-12 | 56 |
telencephalon | 3.74e-12 | 34 |
regional part of nervous system | 3.95e-12 | 53 |
regional part of brain | 3.95e-12 | 53 |
brain grey matter | 8.68e-12 | 34 |
gray matter | 8.68e-12 | 34 |
cerebral hemisphere | 2.89e-11 | 32 |
ectoderm-derived structure | 3.20e-11 | 171 |
ectoderm | 3.20e-11 | 171 |
presumptive ectoderm | 3.20e-11 | 171 |
regional part of telencephalon | 3.63e-11 | 32 |
ecto-epithelium | 1.43e-10 | 104 |
adult organism | 1.21e-09 | 114 |
cerebral cortex | 4.91e-08 | 25 |
pallium | 4.91e-08 | 25 |
regional part of cerebral cortex | 5.05e-08 | 22 |
neocortex | 5.55e-08 | 20 |
structure with developmental contribution from neural crest | 7.69e-07 | 132 |