FFCP PHASE1:Hg19::chr1:1141927..1141985,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=8784 | |EntrezGene=8784 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11914 | |HGNC=11914 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000328596,ENST00000379265_5end | |association_with_transcript=0bp_to_ENST00000328596,ENST00000379265_5end | ||
|cluster_id=chr1:1141927..1141985,- | |||
|coexpression_cluster_id=C99 | |||
|description=CAGE_peak_1_at_TNFRSF18_5end | |description=CAGE_peak_1_at_TNFRSF18_5end | ||
|id=chr1:1141927..1141985,- | |id=chr1:1141927..1141985,- | ||
|ontology_enrichment_celltype=CL:0000738!8.54e-20!140;CL:0000988!2.85e-16!182;CL:0002031!4.65e-15!124;CL:0002087!1.23e-14!119;CL:0000037!4.78e-14!172;CL:0000566!4.78e-14!172;CL:0002032!3.91e-13!165;CL:0000837!3.91e-13!165;CL:0000542!2.78e-12!53;CL:0000051!2.78e-12!53;CL:0000838!8.24e-12!52;CL:0000791!3.80e-11!18;CL:0000789!3.80e-11!18;CL:0002420!3.80e-11!18;CL:0002419!3.80e-11!18;CL:0000790!3.80e-11!18;CL:0000084!3.98e-10!25;CL:0000827!3.98e-10!25;CL:0000625!5.80e-07!11 | |ontology_enrichment_celltype=CL:0000738!8.54e-20!140;CL:0000988!2.85e-16!182;CL:0002031!4.65e-15!124;CL:0002087!1.23e-14!119;CL:0000037!4.78e-14!172;CL:0000566!4.78e-14!172;CL:0002032!3.91e-13!165;CL:0000837!3.91e-13!165;CL:0000542!2.78e-12!53;CL:0000051!2.78e-12!53;CL:0000838!8.24e-12!52;CL:0000791!3.80e-11!18;CL:0000789!3.80e-11!18;CL:0002420!3.80e-11!18;CL:0002419!3.80e-11!18;CL:0000790!3.80e-11!18;CL:0000084!3.98e-10!25;CL:0000827!3.98e-10!25;CL:0000625!5.80e-07!11 | ||
|ontology_enrichment_celltype_v019=CL:0000791;2.79e-16;18!CL:0000789;2.79e-16;18!CL:0002419;2.79e-16;18!CL:0000084;1.53e-15;25!CL:0000625;9.00e-11;11!CL:0000542;1.47e-08;53!CL:0000453;9.22e-08;5!CL:0002087;1.50e-07;104 | |||
|ontology_enrichment_celltype_v019_2=CL:0000988,1.18e-25,177;CL:0000738,2.82e-25,136;CL:0000037,6.22e-22,168;CL:0002032,2.00e-20,161;CL:0000837,2.00e-20,161;CL:0002031,1.34e-18,120;CL:0002087,1.60e-18,115;CL:0000542,2.08e-17,53;CL:0000051,2.08e-17,53;CL:0000838,1.26e-16,52;CL:0000791,1.56e-16,18;CL:0000789,1.56e-16,18;CL:0002420,1.56e-16,18;CL:0002419,1.56e-16,18;CL:0000790,1.56e-16,18;CL:0000084,9.63e-16,25;CL:0000827,9.63e-16,25;CL:0000625,5.00e-11,11;CL:0000453,9.44e-08,5 | |||
|ontology_enrichment_development_v019=CL:0000790;2.79e-16;18!CL:0000051;1.47e-08;53 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!1.39e-12!102;UBERON:0003061!1.39e-12!102;UBERON:0002193!4.13e-12!112;UBERON:0000178!3.10e-07!15;UBERON:0000179!3.10e-07!15;UBERON:0000463!3.10e-07!15 | |ontology_enrichment_uberon=UBERON:0002390!1.39e-12!102;UBERON:0003061!1.39e-12!102;UBERON:0002193!4.13e-12!112;UBERON:0000178!3.10e-07!15;UBERON:0000179!3.10e-07!15;UBERON:0000463!3.10e-07!15 | ||
|ontology_enrichment_uberon_v019=UBERON:0000178;6.72e-10;15!UBERON:0000179;6.72e-10;15!UBERON:0000463;6.72e-10;15!UBERON:0002390;1.92e-08;32 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,1.61e-13,98;UBERON:0003061,1.61e-13,98;UBERON:0002193,1.41e-12,108;UBERON:0000178,1.33e-09,15;UBERON:0000179,1.33e-09,15;UBERON:0000463,1.33e-09,15;UBERON:0002405,3.55e-07,93 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0.697801167972428,0,0,0.495065411840187,0,0,0,0,0,0.246242116153576,0,0.313454721478088,0,0.547497700291537,0,5.57817861960044,6.07544361929599,5.11620078538915,2.36018566109342,1.91914699048606,2.94150634300544,0,0.6024118375565,0.369754010166788,0,0,0,1.66198622559563,4.61252229181326,6.72733699219141,0.671746422719773,0.32389366601898,0.515151135268373,0.290796477559129,0.377875943688809,0,0.232429036905685,5.75635043230556,2.78735733805593,0,1.0246428261164,0.236482229888585,0.344745680736619,2.5819387343353,0,0.188242339542605,4.09359225086769,0.674170453335254,0.306083892370903,3.85114832491312,3.19668562899521,0,0.598390972864896,0,3.19230162491442,7.94339314567596,6.22822248995575,0.251248665256743,1.0429658368404,0.868755378820466,2.42159801053347,1.84138817993782,2.84816148696796,0,0,0,0,0,0,0,0,0,0,0.546138611262131,0,0.853460445133014,0.400395987036012,0,1.98313461835459,0,0,2.34894875748376,2.6759125968766,6.60856642895129,8.40762844472304,0.263384084775077,3.34406609193516,9.43225830597995,12.7472929379696,46.8122187093899,0.977766799900771,1.4203434172042,0,28.6324874194896,32.4066498222321,32.7870163983759,20.0394859186112,52.9017150467038,65.6799705177385,64.9529723184521,87.8793056558998,33.327354859531,0,0,1.04535523804977,18.5827322024009,3.83220493601921,7.55980380061786,3.79529538029254,4.14135038621326,1.95325036156926,2.85135613334512,2.10805166708882,1.4078527226986,2.49861453104692,2.60454977248419,3.28451198768419,1.61285394579786,1.33720097891754,1.73789284659359,0,0,0,0.722878304769133,0,0.724232594804119,0,0.973269740605272,0.661743720148475,0.665188192387692,0.527008714158756,0.196468613246569,0,0.741568885568859,0.97364218096405,0.696518949197069,0.398873881556595,0.476981248610684,1.14398982156026,0.371457501329565,0,0,0,0,0,0.275118041940067,0,0,0,0,0.805658634218294,0,1.22031028774085,0,0,0,0,0,0,0,0,1.31780417436063,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103325781175765,3.56400857184616,0.494533858557114,0,0,0,0,0,0,0.612975591598039,0.600952235626387,0,0,0,0.211931901159562,0.300091096084402,0,0,0,0,0,0,0.184099797284599,0,0.355009592516614,0.10075209822764,0.169560592310488,0.193260853163297,0.545492241181669,0,0,0,0,0.207322110030741,0.252320850875628,0.36497735907583,0,0,0,0.928735856063958,0,0,0,0,0.220587945464788,0,0,0,0,0.38474715694639,0,0,0,1.47008711385542,0,0,0,0,0.122988438543114,0,0.219500570817251,1.1240175325762,0,0.925884451585296,0,0,0,0.34779121492523,0.234817388471643,0.288732895522148,0.925971025153221,0.380508304469197,7.11183958163348,1.71697232418975,0.246217006087397,7.25413221931637,2.67536092119711,0,0.16798212819886,0.141775097242386,0,0,0,0.492663237895943,0.352193736052904,12.4396869324463,2.16179930125442,9.34194007355212,0,0,0,0,0,0,0,0.112131084345361,0,0,0.129271715757778,0,0,0,0,0.514414748524284,5.67396528093113,0.799266537048298,0,0,0,0.65147236858747,0.355391948742546,0,0,0,0,2.43247561282381,0,0,0.239624855491583,0,0,0,0.205476322550383,0.179060963239896,2.35378802386407,9.26044572949058,19.6221093122161,24.0001477843129,0,0,0,0,0,0,0,0.828831026872071,0.12269149171914,2.00068208423871,0,0,0,0,0,0,2.27407504055985,0,0,0,0.0868836144680828,0.195801157462741,1.71571711905428,1.03384013061444,2.37285620900479,4.69601254335155,0,0,0,0,0,0,0,0,0,0,0,0,0,0.519254429183621,0,0.604297247958111,0.200506470303285,0,0,0,0.131124414959424,0,0.15403067420883,3.13739907670742,0,0.844413031143006,0,0,0.215915916102139,0,3.79325012561394,18.5625216326296,0,0.831076008928724,2.91037181138832,0,0,0.769350375349168,0.656029291399411,0,0.103041011647722,0,0,0,0,0,0.193341436584244,0,0.15350367472613,0.137836572484531,0,0.290033387828457,0.0852266274161009,0,0.330569830721956,0.192190067365106,0.510450849978337,0,0,0,0,0,0,0,0,0,0,0,0,0.255897791311334,0,0,0,0,0,0.117812402345686,0,0,0,0,0.243713489631284,0,0.136499911407986,0.282810863907425,0,0.551365343546124,0,0,0,0.655894752046633,0.202910376962704,0.30982349809975,0,0,0,0,0,0.211107635297664,0,0,0,0,0,0,0.0941438007767792,0.43050537267123,0,2.21715076768338,1.1486170010348,1.01489521846434,0,1.70894156152249,1.19115887728894,0.411362273086194,0.648473311192717,2.16012574895246,3.17250070517708,0,0,1.96032172784825,2.60124445176006,0,1.35169502361987,0.159426272728822,23.7499452005052,14.3629027599275,3.38677732358213,0,0,0,0,2.50634477090067,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,0,0,0,0,0.140669416410513,0,0,1.47787785689595,0.398495976502139,2.76283915531148,0,0,1.72318727645497,0,0.988551862620595,0,0,0.0986434056369336,2.3948309234694,0,0,0.278304294485554,1.99613798001194,1.82299432759663,0.0874599999961957,0.724999575434793,0,25.6796186795694,10.6374456795571,0,0,0,0.885741385813839,0,1.52581736317083,0.884634079449797,2.65992857058193,0,0,0,0.692552326534174,0,0,0,0,0.957003479195758,0,1.06606955203727,0,33.1228340993502,0.332423363800313,0,0,0,0,0,0,0,0,0.216388639742091,0,1.94606641907346,0,34.6929720556328,36.4513619892183,3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| ||
|short_description=p1@TNFRSF18 | |short_description=p1@TNFRSF18 | ||
}} | }} |
Latest revision as of 05:56, 16 September 2015
Short description: | p1@TNFRSF18 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_TNFRSF18_5end |
Coexpression cluster: | C99_hairy_mycosis_submaxillary_salivary_cord_kidney_parotid |
Association with transcript: | 0bp_to_ENST00000328596, ENST00000379265_5end |
EntrezGene: | TNFRSF18 |
HGNC: | 11914 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic cell | 1.18e-25 | 177 |
leukocyte | 2.82e-25 | 136 |
hematopoietic stem cell | 6.22e-22 | 168 |
hematopoietic oligopotent progenitor cell | 2.00e-20 | 161 |
hematopoietic multipotent progenitor cell | 2.00e-20 | 161 |
hematopoietic lineage restricted progenitor cell | 1.34e-18 | 120 |
nongranular leukocyte | 1.60e-18 | 115 |
lymphocyte | 2.08e-17 | 53 |
common lymphoid progenitor | 2.08e-17 | 53 |
lymphoid lineage restricted progenitor cell | 1.26e-16 | 52 |
mature alpha-beta T cell | 1.56e-16 | 18 |
alpha-beta T cell | 1.56e-16 | 18 |
immature T cell | 1.56e-16 | 18 |
mature T cell | 1.56e-16 | 18 |
immature alpha-beta T cell | 1.56e-16 | 18 |
T cell | 9.63e-16 | 25 |
pro-T cell | 9.63e-16 | 25 |
CD8-positive, alpha-beta T cell | 5.00e-11 | 11 |
Langerhans cell | 9.44e-08 | 5 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 1.61e-13 | 98 |
blood island | 1.61e-13 | 98 |
hemolymphoid system | 1.41e-12 | 108 |
blood | 1.33e-09 | 15 |
haemolymphatic fluid | 1.33e-09 | 15 |
organism substance | 1.33e-09 | 15 |
immune system | 3.55e-07 | 93 |