FFCP PHASE1:Hg19::chr12:10875768..10875808,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr12:10875768..10875808,- to FFCP PHASE1:Hg19::chr12:10875768..10875808,-: NSchange) |
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(10 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=8531 | |EntrezGene=8531 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2428 | |HGNC=2428 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=97bp_to_ENST00000279550_5end | |||
|cluster_id=chr12:10875768..10875808,- | |||
|coexpression_cluster_id=C1 | |||
|description=CAGE_peak_3_at_CSDA_5end | |||
|id=chr12:10875768..10875808,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0000860;3.66e-10;33!CL:0002057;3.66e-10;33!CL:0000473;6.21e-07;39!CL:0000234;6.21e-07;39 | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000926!4.65e-12!448;UBERON:0004120!4.65e-12!448;UBERON:0006603!4.65e-12!448;UBERON:0000468!1.36e-09!659;UBERON:0000922!7.54e-08!612;UBERON:0000923!5.41e-07!604;UBERON:0005291!5.41e-07!604;UBERON:0006598!5.41e-07!604;UBERON:0002532!5.41e-07!604;UBERON:0000467!6.44e-07!625;UBERON:0002050!8.46e-07!605;UBERON:0005423!8.46e-07!605 | |||
|ontology_enrichment_uberon_v019=UBERON:0003135;1.33e-07;11!UBERON:0003101;5.53e-07;22!UBERON:0000079;5.53e-07;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000926,1.04e-10,315;UBERON:0004120,1.04e-10,315;UBERON:0006603,1.04e-10,315;UBERON:0003135,5.06e-08,11;UBERON:0003081,6.95e-08,203;UBERON:0000923,1.98e-07,560;UBERON:0010316,1.98e-07,560;UBERON:0005291,1.98e-07,560;UBERON:0006598,1.98e-07,560;UBERON:0010317,1.98e-07,560;UBERON:0002532,1.98e-07,560;UBERON:0003101,2.53e-07,22;UBERON:0000079,2.53e-07,22;UBERON:0002050,4.09e-07,564;UBERON:0000473,5.59e-07,8;UBERON:0000922,7.38e-07,592;UBERON:0007023,9.45e-07,114 | |||
|phase1_expression=0.908391896352783,1.07050261945492,1.12763523276777,1.0007329835313,0.446961094427288,0,0,5.05375898741465,1.82829939739887,0,0,0,0.263766978228454,0.866364470720326,0.994192127183747,0.672325146451775,1.20538905604795,0,0.975865597581014,0.246242116153576,0.816002764977012,0.313454721478088,0,0.136874425072884,0.376627918784408,0.61130724598361,0.328402357799783,0.550975469195755,0.786728553697808,0,1.23852898652861,2.75826367343678,1.204823675113,1.84877005083394,0.46480320348181,0.426507697462265,1.46800219667424,0,0.200544447470142,0.651032612147555,0.895661896959697,0.971680998056939,0.77272670290256,1.16318591023652,1.13362783106643,0.970336244751265,0.697287110717054,2.05583944010913,2.16794459626573,1.1507695692886,1.2808035326455,1.41889337933151,2.41321976515633,2.5819387343353,1.35426486594342,2.07066573496865,1.09162460023138,0.674170453335254,3.67300670845083,1.92557416245656,2.55734850319616,0.659702600373432,3.78980949481101,0.426224750532694,1.16083695451434,1.13477044938228,1.24564449799115,2.26123798731069,1.5644487552606,1.08594422352558,0,1.84138817993782,0.632924774881769,0,0,0.419317291016752,0.336985893439485,0.150176892841506,0.32145117339416,0.285012743741249,0.39783335439818,0.182664153764634,0,0,0.889509253863555,0,0.400395987036012,1.72425731986345,1.32208974556972,0,0,0.587237189370939,2.29363936875137,0,0.560508562981536,0,0,0,0,0,0,0,0,0,0,0,0,0.25618263945135,0,0,0,0,0,0.267540828089713,0,0,0,0,0,0,0.651083453856419,0,0,0.255973222308837,0,0,0,0.604820229674197,0.534880391567015,0.724122019413995,2.43806866313962,0,0.12786256184353,1.0843174571537,1.50401373190767,0.724232594804119,0,0.486634870302636,0.567208902984407,0.443458794925128,0.614843499851882,49.7720486891308,1.45718115317017,1.48313777113772,0,0,0.26591592103773,0.238490624305342,0,0,1.98762407366705,0,1.04142150482278,0,0.419499436209906,1.92582629358047,1.8809546988313,0.516833518338658,0.71153252537342,0,0.805658634218294,0,1.95249646038536,0.367663080345869,0,1.3394959242612,1.34717623575702,0.900891843866578,0,0.949265659568129,2.01521918323448,0,0,0.436094052142534,0,0.886413581652058,0.529636723252875,0.573673241497627,0.354668382198357,1.68203280042692,0,0.24666754841716,0,0.538842688278752,1.14423332179421,0.454072282934794,1.72852777344,0.937285727335186,1.5608003841516,1.1409436430889,0.298897361103602,0.469737994575059,1.13311061057692,0.702254033511242,0.408308342509787,0.61417158655884,0.309977343527296,2.37600571456411,3.4617370098998,0,0,0.168336113954066,0.125118519871964,0.277064115484183,0,0.612975591598039,2.25357088359895,0.340296549480063,0.179389635688862,0.640672166455702,0.423863802319124,0,0.412210116953756,0,0.558350568994769,0.168776332241266,0.292311015483596,0,0.276149695926898,0,1.06502877754984,0.403008392910561,0,1.15956511897978,0.545492241181669,0.573609190778008,1.95157929807353,0.530119073285941,0.69716365721711,0.829288440122964,1.7662459561294,0.72995471815166,0,1.92972281457866,1.38134921352481,0,0,0.946454400318751,1.01150814046861,0,0.441175890929576,0.217879444092406,0.474541238222193,0.674156540800822,0.588664395376038,0.38474715694639,1.4763109092493,1.40241773803446,0.4115740113314,0,0,0,0,0,0.491953754172454,0,1.20725313949488,2.24803506515239,0.502644862058154,0.370353780634118,0.977424915930974,1.03993478527958,0,0.115930404975077,0.234817388471643,0.866198686566443,0.925971025153221,0.570762456703795,0.790204397959275,0,0.246217006087397,0,0.297262324577456,0,0.16798212819886,0.283550194484773,0.53735113621709,0.290633938513962,0.383382679165211,0,0,3.31724984865235,7.78247748451592,6.43836410474538,0.253991577168676,2.29193055334967,0,0,0.102827492703324,0.300343057843917,0.571652865261156,0.560655421726804,1.30788020649984,0.51336800074665,0.517086863031111,0,0,0,0,0.514414748524284,0,0.532844358032199,0.428933980974443,0.542621605391443,0,0,0,1.58390374586686,0.301439377059586,0,0.399891964728228,0,0,2.10833939483032,0.958499421966331,0,0,0.144781306667579,0.61642896765115,0.179060963239896,1.00876629594175,0.591092280605782,0,0.385029108839245,0.508189248444927,0,0,0.335032530668698,0,0,0,0,0.736148950314839,0.500170521059677,0.271265023699736,0,0.892144943985809,0.315404830067869,0.585707074963566,3.91229929646035,18.1926003244788,4.1389228517002,0,0.368738337083406,0.521301686808497,0.783204629850962,0.686286847621712,0,0.431428401637234,0.426910231213777,0.606255142892519,0,0.907170879989041,0.992431231275107,0.767309866440312,1.96462066103151,1.15325234330131,1.02341449813341,0.482561763430822,0,0.308419387605311,0.710246901252508,0.821271560138091,0,0.116210378459959,1.81289174387433,2.00506470303285,2.67034867914099,0.918515585316854,0.728364672026868,1.44236856455367,0.451199612907412,0.0770153371044148,0.784349769176855,0,0.105551628892876,0,0.680374821106063,1.29549549661284,1.54227252690289,0,1.00337954770971,0.509752546090077,1.66215201785745,0.671624264166535,0.438519753291869,0.522870902049801,0.512900250232778,0,0.9761351839929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| ||
|short_description=p3@CSDA | |||
}} | }} |
Latest revision as of 04:43, 16 September 2015
Short description: | p3@CSDA |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_CSDA_5end |
Coexpression cluster: | C1_testis_epididymis_embryonic_medulla_pituitary_trachea_caudate |
Association with transcript: | 97bp_to_ENST00000279550_5end |
EntrezGene: | CSDA |
HGNC: | 2428 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesoderm | 1.04e-10 | 315 |
mesoderm-derived structure | 1.04e-10 | 315 |
presumptive mesoderm | 1.04e-10 | 315 |
male reproductive organ | 5.06e-08 | 11 |
lateral plate mesoderm | 6.95e-08 | 203 |
germ layer | 1.98e-07 | 560 |
germ layer / neural crest | 1.98e-07 | 560 |
embryonic tissue | 1.98e-07 | 560 |
presumptive structure | 1.98e-07 | 560 |
germ layer / neural crest derived structure | 1.98e-07 | 560 |
epiblast (generic) | 1.98e-07 | 560 |
male organism | 2.53e-07 | 22 |
male reproductive system | 2.53e-07 | 22 |
embryonic structure | 4.09e-07 | 564 |
testis | 5.59e-07 | 8 |
embryo | 7.38e-07 | 592 |
adult organism | 9.45e-07 | 114 |