FFCP PHASE1:Hg19::chr3:154797636..154797696,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr3:154797636..154797696,+ to FFCP PHASE1:Hg19::chr3:154797636..154797696,+: NSchange) |
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(10 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=4311 | |EntrezGene=4311 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=7154 | |HGNC=7154 | ||
|TSSclassifier=strong | |||
|UniProt=C9JR96 | |UniProt=C9JR96 | ||
|association_with_transcript=0bp_to_ENST00000481828_5end | |||
|cluster_id=chr3:154797636..154797696,+ | |||
|coexpression_cluster_id=C2728 | |||
|description=CAGE_peak_1_at_MME_5end | |||
|id=chr3:154797636..154797696,+ | |||
|ontology_enrichment_celltype=CL:0000055!1.91e-32!180;CL:0000057!1.26e-17!75;CL:0000680!2.96e-15!57;CL:0000056!2.96e-15!57;CL:0000355!2.96e-15!57;CL:0000187!8.06e-14!54;CL:0000393!1.91e-11!60;CL:0000211!1.91e-11!60;CL:0000183!3.55e-11!59;CL:0000048!1.95e-10!430;CL:0002620!4.14e-10!23;CL:0000192!1.06e-09!42;CL:0000514!1.06e-09!42;CL:0000723!1.67e-09!436;CL:0000034!3.14e-09!444;CL:0002371!4.52e-09!591;CL:0000144!4.18e-07!625 | |||
|ontology_enrichment_celltype_v019=CL:0002620;8.85e-11;23!CL:0000723;1.90e-09;61!CL:0000187;6.79e-09;55!CL:0000134;1.18e-08;55!CL:0000048;2.08e-08;58!CL:0000057;6.22e-08;73!CL:0000192;1.45e-07;43!CL:0000034;2.32e-07;69!CL:0000393;3.84e-07;61!CL:0000211;3.84e-07;61 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,1.42e-18,76;CL:0000680,1.52e-16,58;CL:0000056,1.52e-16,58;CL:0000355,1.52e-16,58;CL:0000187,5.51e-15,55;CL:0000048,2.48e-13,427;CL:0000723,1.95e-12,433;CL:0000393,3.18e-12,61;CL:0000211,3.18e-12,61;CL:0000034,1.40e-11,441;CL:0002620,7.50e-11,23;CL:0000192,1.64e-10,43;CL:0000514,1.64e-10,43;CL:0000136,7.12e-07,15;CL:0000359,9.83e-07,32 | |||
|ontology_enrichment_development_v019=CL:0000355;3.45e-09;58!CL:0000514;1.45e-07;43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!1.57e-21!83;UBERON:0002329!1.57e-21!83;UBERON:0003077!1.57e-21!83;UBERON:0003059!1.57e-21!83;UBERON:0007282!1.57e-21!83;UBERON:0009618!1.57e-21!83;UBERON:0007285!1.57e-21!83;UBERON:0004290!3.16e-19!70;UBERON:0000486!8.79e-17!82;UBERON:0001134!4.54e-15!61;UBERON:0002036!4.54e-15!61;UBERON:0003082!4.54e-15!61;UBERON:0002385!6.97e-15!63;UBERON:0001015!6.97e-15!63;UBERON:0000383!6.97e-15!63;UBERON:0005256!3.80e-11!143;UBERON:0003102!8.95e-11!95;UBERON:0002199!6.11e-09!45;UBERON:0002416!6.11e-09!45;UBERON:0002100!1.61e-08!216;UBERON:0002097!2.98e-07!40;UBERON:0000475!6.55e-07!365;UBERON:0000490!7.71e-07!138 | |||
|ontology_enrichment_uberon_v019=UBERON:0002385;6.00e-10;31!UBERON:0001015;6.00e-10;31!UBERON:0000383;6.00e-10;31!UBERON:0001134;6.44e-07;16!UBERON:0002036;6.44e-07;16!UBERON:0002384;7.32e-07;198 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002329,7.30e-21,71;UBERON:0003059,7.30e-21,71;UBERON:0007282,7.30e-21,71;UBERON:0004290,7.30e-21,71;UBERON:0009618,7.30e-21,71;UBERON:0007524,1.31e-20,73;UBERON:0003077,3.84e-20,72;UBERON:0007285,3.84e-20,72;UBERON:0000486,3.27e-18,83;UBERON:0007503,1.11e-16,78;UBERON:0001134,2.39e-16,62;UBERON:0002036,2.39e-16,62;UBERON:0003082,2.39e-16,62;UBERON:0002385,6.71e-16,64;UBERON:0001015,6.71e-16,64;UBERON:0000383,6.71e-16,64;UBERON:0003102,2.20e-12,99;UBERON:0005256,1.99e-11,122;UBERON:0003104,4.96e-11,160;UBERON:0009142,4.96e-11,160;UBERON:0002199,4.02e-10,46;UBERON:0002416,4.02e-10,46;UBERON:0000490,3.82e-09,148;UBERON:0002097,2.90e-08,41;UBERON:0002100,5.78e-08,199;UBERON:0000926,9.52e-08,315;UBERON:0004120,9.52e-08,315;UBERON:0006603,9.52e-08,315 | |||
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|phase1_expression=70.6728895362465,73.4364796946072,15.2230756423649,27.0197905553452,6.25745532198203,0,50.6599756336621,34.1128731650489,30.0363472429814,1.47440361900905,0,5.89791704751465,1.58260186937072,5.81701858912219,7.29074226601415,16.1358035148426,7.8350288643117,10.9546513558106,10.2465887746006,0.369363174230364,0.612002073732759,0.626909442956176,0.85870796139317,0.410623275218653,1.38096903554283,0,0,0,0.786728553697808,0,0.309632246632152,0.919421224478927,0.90361775633475,0.369754010166788,81.0306918069955,27.2964926375849,1.46800219667424,0,0.401088894940283,0,0,0.32389366601898,0,0.872389432677388,0,0.970336244751265,0.464858073811369,0,1.23882548358041,0.575384784644301,0.256160706529101,0.709446689665756,0.344745680736619,0.645484683583826,0,0.752969358170419,0,1.34834090667051,0.612167784741805,0.320929027076094,0.639337125799041,1.64925650093358,0,0.426224750532694,0,0,1.86846674698672,0.502497330513487,0,1.73751075764093,0.605399502633369,0,1.58231193720442,0,0,0,0,0.600707571366025,0.64290234678832,0,0.19891667719909,0.182664153764634,0,2.18455444504853,0.889509253863555,1.28019066769952,2.00197993518006,1.14950487990897,3.30522436392431,0.954053754535364,0.569212969109448,0.587237189370939,0.764546456250458,2.64342657158052,1.12101712596307,2.63384084775077,0,0,0.205601498999509,0,0,0,0,0,0,0,0.270803863765016,0,0,0,0,0,0,0,0,0,0,0,1.01207876807801,0,0,0,0.301150238155546,0,0,0.236777252044017,0.821127996921047,0,0,0,4.87613732627923,6.03630773733273,6.64885321586358,1.0843174571537,4.51204119572301,3.76600949298142,5.5670016293577,1.45990461090791,3.30871860074237,2.66075276955077,0.790513071238134,2.03017567021455,0,0,1.62273696827342,0.522389211897802,0.664789802594326,5.24679373471752,1.14398982156026,4.08603251462521,0.79504962946682,8.60234595106124,0.347140501607594,1.69592382577203,0.419499436209906,0.825354125820202,2.08994966536811,6.20200222006389,11.028754143288,11.7152214467635,0.805658634218294,1.52054421143703,0.488124115096339,6.98559852657151,0,8.66207364355574,3.59246996201872,1.68917220724983,0,0.949265659568129,2.74802615895611,50.076558625704,124.089684527464,0,0,5.06522046658319,12.4464629964426,6.3104056564739,6.02936249737207,1.12135520028461,1.06748995729705,1.2333377420858,23.6520386903822,12.1239604862719,20.1058140829554,0,1.15235184896,11.7160715916898,102.076345123515,27.953119255678,66.0563168038961,68.1120092133836,55.360546973901,60.1129452685624,24.2943463793323,21.2503368949359,22.008391390438,137.808331444718,54.8932582998396,0.910161361938026,0.718618141816238,47.8074563629548,29.5279706897835,62.6164900994253,34.2402544287054,7.35570709917647,51.6818922638693,7.14622753908133,6.45802688479903,91.829677191984,105.118222975143,1.80054657650641,39.1599611106068,34.5238323661143,53.6016546234979,11.1392379279236,40.8261051625422,7.82544700156755,67.0123262115939,15.0330832841495,12.4253357380815,9.16844093871526,9.32583257707682,5.21804303540901,3.54569956768085,0,0.853815942907168,0.397589304964456,0.348581828608555,0.414644220061482,0.252320850875628,0.72995471815166,50.0638503455411,24.4431556513296,5.52539685409922,82.6574911896923,75.7973455753065,0,0,0,0,0,0,0,0,0,0,0,2.8810180793198,5.88034845542168,0,0,0,16.3341346783421,0.614942192715568,23.1616543903009,0,0,0.100528972411631,5.09236448371913,13.3581405177233,4.15973914111831,1.44331342025273,0.811512834825538,1.17408694235822,0.144366447761074,0,0.380508304469197,0,0,0.246217006087397,3.51006397708857,1.48631162288728,2.81201501960331,3.52762469217605,1.13420077793909,1.52249488594842,1.45316969256981,0,1.97065295158377,1.05658120815871,1.65862492432618,1.58531948758658,2.01987893482208,50.6078217508587,20.2453865545887,0,10.2643467613623,17.9948112230816,80.7922825600138,10.5755780073314,1.56983518083505,0.43596006883328,6.0137394373179,36.4546238436933,28.6125156681506,33.81211010224,35.9016457389575,31.2022310734098,4.8869401109807,5.67396528093113,4.52917704327369,14.1548213721566,112.322672316029,39.5155361654769,39.7398144838357,7.81862287233601,70.4837166910752,0.301439377059586,0.871533458600294,0,0,0.502257091432126,0,0.239624855491583,0,14.2636905040718,36.0505453602272,25.2735876736972,106.362212164498,0,0,0,0,1.77866236955724,1.30139853857622,0,0,0.637938751653163,190.247784082584,158.555573378133,328.631502154776,5.39842563564216,5.00170521059677,20.3448767774802,3.95144636908534,7.31558854068363,7.41201350659493,3.27995961979597,43.3362383607915,36.3852006489576,21.729344971426,6.64225598535437,3.13427586520895,196.096317854463,0.391602314925481,0.343143423810856,0.620304078368662,2.15714200818617,0,3.33440328590885,4.99306318531491,5.44302527993425,72.6955876909016,24.8608396726661,65.9551221917723,13.71088897036,51.1707249066703,2.41280881715411,5.93672265779964,15.1125499926602,9.05564799096948,20.6139161594661,10.3850885836724,11.0399859536961,0,4.0101294060657,7.09023614806402,12.9740326426006,14.2031111045239,21.635528468305,2.70719767744447,10.3200551719916,1.568699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| ||
|short_description=p1@MME | |||
}} | }} |
Latest revision as of 04:43, 16 September 2015
Short description: | p1@MME |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_MME_5end |
Coexpression cluster: | C2728_Smooth_Neutrophils_Pancreatic_tridermal_Fibroblast_mesenchymal_Mesenchymal |
Association with transcript: | 0bp_to_ENST00000481828_5end |
EntrezGene: | MME |
HGNC: | 7154 |
UniProt: | C9JR96 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 1.42e-18 | 76 |
muscle precursor cell | 1.52e-16 | 58 |
myoblast | 1.52e-16 | 58 |
multi-potent skeletal muscle stem cell | 1.52e-16 | 58 |
muscle cell | 5.51e-15 | 55 |
multi fate stem cell | 2.48e-13 | 427 |
somatic stem cell | 1.95e-12 | 433 |
electrically responsive cell | 3.18e-12 | 61 |
electrically active cell | 3.18e-12 | 61 |
stem cell | 1.40e-11 | 441 |
skin fibroblast | 7.50e-11 | 23 |
smooth muscle cell | 1.64e-10 | 43 |
smooth muscle myoblast | 1.64e-10 | 43 |
fat cell | 7.12e-07 | 15 |
vascular associated smooth muscle cell | 9.83e-07 | 32 |
Ontology term | p-value | n |
---|---|---|
somite | 7.30e-21 | 71 |
presomitic mesoderm | 7.30e-21 | 71 |
presumptive segmental plate | 7.30e-21 | 71 |
dermomyotome | 7.30e-21 | 71 |
trunk paraxial mesoderm | 7.30e-21 | 71 |
dense mesenchyme tissue | 1.31e-20 | 73 |
paraxial mesoderm | 3.84e-20 | 72 |
presumptive paraxial mesoderm | 3.84e-20 | 72 |
multilaminar epithelium | 3.27e-18 | 83 |
epithelial vesicle | 1.11e-16 | 78 |
skeletal muscle tissue | 2.39e-16 | 62 |
striated muscle tissue | 2.39e-16 | 62 |
myotome | 2.39e-16 | 62 |
muscle tissue | 6.71e-16 | 64 |
musculature | 6.71e-16 | 64 |
musculature of body | 6.71e-16 | 64 |
surface structure | 2.20e-12 | 99 |
trunk mesenchyme | 1.99e-11 | 122 |
mesenchyme | 4.96e-11 | 160 |
entire embryonic mesenchyme | 4.96e-11 | 160 |
integument | 4.02e-10 | 46 |
integumental system | 4.02e-10 | 46 |
unilaminar epithelium | 3.82e-09 | 148 |
skin of body | 2.90e-08 | 41 |
trunk | 5.78e-08 | 199 |
mesoderm | 9.52e-08 | 315 |
mesoderm-derived structure | 9.52e-08 | 315 |
presumptive mesoderm | 9.52e-08 | 315 |