FFCP PHASE1:Hg19::chr1:113161730..113161772,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr1:113161730..113161772,- to FFCP PHASE1:Hg19::chr1:113161730..113161772,-: NSchange) |
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(9 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=54879 | |EntrezGene=54879 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=18441 | |HGNC=18441 | ||
|TSSclassifier=strong | |||
|UniProt=B7Z8V6,F5H2P3 | |UniProt=B7Z8V6,F5H2P3 | ||
|association_with_transcript=0bp_to_ENST00000361846,ENST00000470683,ENST00000473206,ENST00000480988,ENST00000497235,ENST00000498383,ENST00000543570,ENST00000544629,uc001ech.2,uc009wgi.1,uc010owg.1,uc010owh.1,uc010owj.1_5end | |||
|cluster_id=chr1:113161730..113161772,- | |||
|description=CAGE_peak_1_at_ST7L_5end | |||
|id=chr1:113161730..113161772,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:0050687!1.32e-09!143;DOID:305!2.82e-07!106 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:0050687,1.32e-09,143;DOID:305,2.82e-07,106 | |||
|ontology_enrichment_uberon=UBERON:0000475!4.07e-16!365;UBERON:0000481!2.06e-14!347;UBERON:0000073!3.07e-14!94;UBERON:0001016!3.07e-14!94;UBERON:0000924!1.65e-13!173;UBERON:0006601!1.65e-13!173;UBERON:0000955!4.54e-13!69;UBERON:0006238!4.54e-13!69;UBERON:0000033!1.39e-12!123;UBERON:0004121!1.62e-12!169;UBERON:0001049!3.59e-12!57;UBERON:0005068!3.59e-12!57;UBERON:0006241!3.59e-12!57;UBERON:0007135!3.59e-12!57;UBERON:0001017!5.34e-12!82;UBERON:0000153!5.56e-12!129;UBERON:0007811!5.56e-12!129;UBERON:0005743!8.31e-12!86;UBERON:0000468!1.33e-11!659;UBERON:0007023!2.62e-11!115;UBERON:0002346!6.52e-11!90;UBERON:0002616!1.02e-10!59;UBERON:0000477!1.04e-10!286;UBERON:0003080!1.60e-10!42;UBERON:0002780!2.44e-10!41;UBERON:0001890!2.44e-10!41;UBERON:0006240!2.44e-10!41;UBERON:0000062!3.04e-10!511;UBERON:0003075!7.07e-10!86;UBERON:0007284!7.07e-10!86;UBERON:0001893!3.51e-08!34;UBERON:0000064!3.63e-08!219;UBERON:0000467!3.68e-08!625;UBERON:0004111!4.10e-08!241;UBERON:0003056!4.13e-08!61;UBERON:0002791!4.48e-08!33;UBERON:0000480!6.49e-08!626;UBERON:0001869!1.27e-07!32;UBERON:0001007!1.28e-07!155;UBERON:0001555!1.28e-07!155;UBERON:0007026!1.28e-07!155;UBERON:0000922!2.76e-07!612;UBERON:0002020!3.49e-07!34;UBERON:0003528!3.49e-07!34;UBERON:0002050!4.10e-07!605;UBERON:0005423!4.10e-07!605;UBERON:0000923!7.14e-07!604;UBERON:0005291!7.14e-07!604;UBERON:0006598!7.14e-07!604;UBERON:0002532!7.14e-07!604 | |||
|ontology_enrichment_uberon_v019=UBERON:0002780;5.35e-08;41!UBERON:0001890;5.35e-08;41!UBERON:0000073;1.64e-07;53!UBERON:0002616;1.64e-07;53!UBERON:0001893;4.94e-07;34!UBERON:0001869;6.90e-07;32!UBERON:0002791;7.61e-07;32!UBERON:0001016;7.92e-07;83!UBERON:0000955;9.75e-07;68 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0011216,8.24e-17,223;UBERON:0001016,2.90e-14,89;UBERON:0004121,9.98e-14,171;UBERON:0000924,9.98e-14,171;UBERON:0006601,9.98e-14,171;UBERON:0000955,7.07e-13,68;UBERON:0006238,7.07e-13,68;UBERON:0001049,5.56e-12,56;UBERON:0005068,5.56e-12,56;UBERON:0006241,5.56e-12,56;UBERON:0007135,5.56e-12,56;UBERON:0002346,6.56e-12,86;UBERON:0001017,8.26e-12,81;UBERON:0000073,2.64e-11,53;UBERON:0002616,2.64e-11,53;UBERON:0007023,3.81e-11,114;UBERON:0003075,7.87e-11,82;UBERON:0007284,7.87e-11,82;UBERON:0002780,2.44e-10,41;UBERON:0001890,2.44e-10,41;UBERON:0003080,2.44e-10,41;UBERON:0006240,2.44e-10,41;UBERON:0010314,4.00e-10,132;UBERON:0003056,2.27e-08,61;UBERON:0010371,2.33e-08,104;UBERON:0001893,3.51e-08,34;UBERON:0004111,4.16e-08,240;UBERON:0002791,1.26e-07,32;UBERON:0001869,1.27e-07,32;UBERON:0003528,3.49e-07,34;UBERON:0002020,3.49e-07,34 | |||
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| ||
|short_description=p1@ST7L | |||
}} | }} |
Latest revision as of 04:38, 16 September 2015
Short description: | p1@ST7L |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_ST7L_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000361846, ENST00000470683, ENST00000473206, ENST00000480988, ENST00000497235, ENST00000498383, ENST00000543570, ENST00000544629, uc001ech.2, uc009wgi.1, uc010owg.1, uc010owh.1, uc010owj.1_5end |
EntrezGene: | ST7L |
HGNC: | 18441 |
UniProt: | B7Z8V6F5H2P3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
organ system subdivision | 8.24e-17 | 223 |
nervous system | 2.90e-14 | 89 |
ectoderm-derived structure | 9.98e-14 | 171 |
ectoderm | 9.98e-14 | 171 |
presumptive ectoderm | 9.98e-14 | 171 |
brain | 7.07e-13 | 68 |
future brain | 7.07e-13 | 68 |
neural tube | 5.56e-12 | 56 |
neural rod | 5.56e-12 | 56 |
future spinal cord | 5.56e-12 | 56 |
neural keel | 5.56e-12 | 56 |
neurectoderm | 6.56e-12 | 86 |
central nervous system | 8.26e-12 | 81 |
regional part of nervous system | 2.64e-11 | 53 |
regional part of brain | 2.64e-11 | 53 |
adult organism | 3.81e-11 | 114 |
neural plate | 7.87e-11 | 82 |
presumptive neural plate | 7.87e-11 | 82 |
regional part of forebrain | 2.44e-10 | 41 |
forebrain | 2.44e-10 | 41 |
anterior neural tube | 2.44e-10 | 41 |
future forebrain | 2.44e-10 | 41 |
structure with developmental contribution from neural crest | 4.00e-10 | 132 |
pre-chordal neural plate | 2.27e-08 | 61 |
ecto-epithelium | 2.33e-08 | 104 |
telencephalon | 3.51e-08 | 34 |
anatomical conduit | 4.16e-08 | 240 |
regional part of telencephalon | 1.26e-07 | 32 |
cerebral hemisphere | 1.27e-07 | 32 |
brain grey matter | 3.49e-07 | 34 |
gray matter | 3.49e-07 | 34 |
Ontology term | p-value | n |
---|---|---|
cell type cancer | 1.32e-09 | 143 |
carcinoma | 2.82e-07 | 106 |