FFCP PHASE1:Hg19::chr11:119600137..119600198,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr11:119600137..119600198,- to FFCP PHASE1:Hg19::chr11:119600137..119600198,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=5818 | |EntrezGene=5818 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9706 | |HGNC=9706 | ||
|TSSclassifier=strong | |||
|UniProt=Q15223 | |UniProt=Q15223 | ||
|association_with_transcript=-343bp_to_ENST00000264025_5end | |||
|cluster_id=chr11:119600137..119600198,- | |||
|description=CAGE_peak_2_at_PVRL1_5end | |||
|id=chr11:119600137..119600198,- | |||
|ontology_enrichment_celltype=CL:0000066!3.46e-10!254;CL:0002076!1.49e-09!43;CL:0000223!1.93e-08!59 | |||
|ontology_enrichment_celltype_v019=CL:0002076;3.79e-09;42!CL:0002368;1.71e-07;13 | |||
|ontology_enrichment_celltype_v019_2=CL:0002076,4.67e-12,42;CL:0000066,1.05e-08,253;CL:0000223,1.17e-08,58;CL:0002368,1.83e-07,13 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004121!6.50e-12!169;UBERON:0000924!4.54e-11!173;UBERON:0006601!4.54e-11!173;UBERON:0001017!1.94e-09!82;UBERON:0002619!2.50e-09!22;UBERON:0005743!2.87e-09!86;UBERON:0000956!6.95e-09!25;UBERON:0000203!6.95e-09!25;UBERON:0001950!9.49e-09!20;UBERON:0000033!1.77e-08!123;UBERON:0000073!2.60e-08!94;UBERON:0001016!2.60e-08!94;UBERON:0003075!7.87e-08!86;UBERON:0007284!7.87e-08!86;UBERON:0001869!9.25e-08!32;UBERON:0001893!9.76e-08!34;UBERON:0000153!1.27e-07!129;UBERON:0007811!1.27e-07!129;UBERON:0001049!1.67e-07!57;UBERON:0005068!1.67e-07!57;UBERON:0006241!1.67e-07!57;UBERON:0007135!1.67e-07!57;UBERON:0002780!2.16e-07!41;UBERON:0001890!2.16e-07!41;UBERON:0006240!2.16e-07!41;UBERON:0003056!2.74e-07!61;UBERON:0002791!2.82e-07!33;UBERON:0000064!3.20e-07!219;UBERON:0000955!3.61e-07!69;UBERON:0006238!3.61e-07!69;UBERON:0002020!5.32e-07!34;UBERON:0003528!5.32e-07!34;UBERON:0002346!6.50e-07!90;UBERON:0003080!8.42e-07!42 | |||
|ontology_enrichment_uberon_v019=UBERON:0002619;1.06e-11;22!UBERON:0001950;7.27e-11;20!UBERON:0000956;3.28e-10;25!UBERON:0000203;3.28e-10;25!UBERON:0001869;5.22e-08;32!UBERON:0001893;6.61e-08;34!UBERON:0002791;3.94e-07;32!UBERON:0003528;7.13e-07;34!UBERON:0002020;7.13e-07;34 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002619,4.30e-12,22;UBERON:0010371,7.46e-12,104;UBERON:0004121,9.19e-12,171;UBERON:0000924,9.19e-12,171;UBERON:0006601,9.19e-12,171;UBERON:0001017,1.51e-11,81;UBERON:0001950,2.39e-11,20;UBERON:0001016,1.14e-10,89;UBERON:0000956,1.36e-10,25;UBERON:0000203,1.36e-10,25;UBERON:0000073,2.86e-09,53;UBERON:0002616,2.86e-09,53;UBERON:0001869,2.95e-09,32;UBERON:0001049,3.23e-09,56;UBERON:0005068,3.23e-09,56;UBERON:0006241,3.23e-09,56;UBERON:0007135,3.23e-09,56;UBERON:0001893,4.30e-09,34;UBERON:0000955,7.07e-09,68;UBERON:0006238,7.07e-09,68;UBERON:0002780,2.45e-08,41;UBERON:0001890,2.45e-08,41;UBERON:0003080,2.45e-08,41;UBERON:0006240,2.45e-08,41;UBERON:0003056,3.06e-08,61;UBERON:0011216,3.76e-08,223;UBERON:0002791,3.94e-08,32;UBERON:0003075,6.15e-08,82;UBERON:0007284,6.15e-08,82;UBERON:0003528,8.84e-08,34;UBERON:0002020,8.84e-08,34;UBERON:0002346,2.35e-07,86 | |||
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| ||
|short_description=p2@PVRL1 | |||
}} | }} |
Latest revision as of 04:19, 16 September 2015
Short description: | p2@PVRL1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_PVRL1_5end |
Coexpression cluster: | NA |
Association with transcript: | -343bp_to_ENST00000264025_5end |
EntrezGene: | PVRL1 |
HGNC: | 9706 |
UniProt: | Q15223 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endo-epithelial cell | 4.67e-12 | 42 |
epithelial cell | 1.05e-08 | 253 |
endodermal cell | 1.17e-08 | 58 |
respiratory epithelial cell | 1.83e-07 | 13 |
Ontology term | p-value | n |
---|---|---|
regional part of cerebral cortex | 4.30e-12 | 22 |
ecto-epithelium | 7.46e-12 | 104 |
ectoderm-derived structure | 9.19e-12 | 171 |
ectoderm | 9.19e-12 | 171 |
presumptive ectoderm | 9.19e-12 | 171 |
central nervous system | 1.51e-11 | 81 |
neocortex | 2.39e-11 | 20 |
nervous system | 1.14e-10 | 89 |
cerebral cortex | 1.36e-10 | 25 |
pallium | 1.36e-10 | 25 |
regional part of nervous system | 2.86e-09 | 53 |
regional part of brain | 2.86e-09 | 53 |
cerebral hemisphere | 2.95e-09 | 32 |
neural tube | 3.23e-09 | 56 |
neural rod | 3.23e-09 | 56 |
future spinal cord | 3.23e-09 | 56 |
neural keel | 3.23e-09 | 56 |
telencephalon | 4.30e-09 | 34 |
brain | 7.07e-09 | 68 |
future brain | 7.07e-09 | 68 |
regional part of forebrain | 2.45e-08 | 41 |
forebrain | 2.45e-08 | 41 |
anterior neural tube | 2.45e-08 | 41 |
future forebrain | 2.45e-08 | 41 |
pre-chordal neural plate | 3.06e-08 | 61 |
organ system subdivision | 3.76e-08 | 223 |
regional part of telencephalon | 3.94e-08 | 32 |
neural plate | 6.15e-08 | 82 |
presumptive neural plate | 6.15e-08 | 82 |
brain grey matter | 8.84e-08 | 34 |
gray matter | 8.84e-08 | 34 |
neurectoderm | 2.35e-07 | 86 |