FFCP PHASE1:Hg19::chr4:152020559..152020567,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(8 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6189 | |EntrezGene=6189 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10421 | |HGNC=10421 | ||
|TSSclassifier=strong | |||
|UniProt=P61247 | |UniProt=P61247 | ||
|association_with_transcript=-157bp_to_ENST00000274065_5end | |association_with_transcript=-157bp_to_ENST00000274065_5end | ||
|cluster_id=chr4:152020559..152020567,+ | |||
|coexpression_cluster_id=C1 | |coexpression_cluster_id=C1 | ||
|description=CAGE_peak_7_at_RPS3A_5end | |description=CAGE_peak_7_at_RPS3A_5end | ||
|id=chr4:152020559..152020567,+ | |id=chr4:152020559..152020567,+ | ||
|ontology_enrichment_celltype=CL:0000540!1.27e-10!6;CL:0000031!1.27e-10!6;CL:0000404!1.27e-10!6;CL:0000047!4.43e-08!8 | |ontology_enrichment_celltype=CL:0000540!1.27e-10!6;CL:0000031!1.27e-10!6;CL:0000404!1.27e-10!6;CL:0000047!4.43e-08!8 | ||
|ontology_enrichment_celltype_v019=CL:0000306;1.13e-13;4!CL:0002222;1.13e-13;4!CL:0002224;1.13e-13;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0000306,1.13e-13,4;CL:0002222,1.13e-13,4;CL:0002224,1.13e-13,4 | |||
|ontology_enrichment_development_v019=UBERON:0009117;7.72e-21;10!UBERON:0005564;7.72e-21;10 | |||
|ontology_enrichment_disease=DOID:630!4.99e-08!1;DOID:0050177!4.99e-08!1;DOID:0050427!4.99e-08!1;DOID:2355!1.75e-07!1 | |ontology_enrichment_disease=DOID:630!4.99e-08!1;DOID:0050177!4.99e-08!1;DOID:0050427!4.99e-08!1;DOID:2355!1.75e-07!1 | ||
|ontology_enrichment_disease_v019=DOID:1036;1.69e-07;8 | |||
|ontology_enrichment_disease_v019_2=DOID:1036,1.80e-07,8 | |||
|ontology_enrichment_uberon=UBERON:0000473!4.54e-08!8;UBERON:0000997!1.54e-07!1;UBERON:0005056!1.54e-07!1 | |ontology_enrichment_uberon=UBERON:0000473!4.54e-08!8;UBERON:0000997!1.54e-07!1;UBERON:0005056!1.54e-07!1 | ||
|ontology_enrichment_uberon_v019=UBERON:0000473;9.81e-26;8!UBERON:0003135;4.69e-19;11!UBERON:0010077;1.13e-13;4!UBERON:0005389;1.13e-13;4!UBERON:0000484;1.13e-13;4!UBERON:0000965;1.13e-13;4!UBERON:0001803;1.13e-13;4!UBERON:0000991;1.61e-10;21!UBERON:0003101;4.33e-10;22!UBERON:0000079;4.33e-10;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000473,8.65e-26,8;UBERON:0003135,4.28e-19,11;UBERON:0010077,1.13e-13,4;UBERON:0005389,1.13e-13,4;UBERON:0000484,1.13e-13,4;UBERON:0002546,1.13e-13,4;UBERON:0000965,1.13e-13,4;UBERON:0001803,1.13e-13,4;UBERON:0003073,1.13e-13,4;UBERON:0005426,1.13e-13,4;UBERON:0000991,1.53e-10,21;UBERON:0009196,1.53e-10,21;UBERON:0009117,1.53e-10,21;UBERON:0005564,1.53e-10,21;UBERON:0004176,4.14e-10,22;UBERON:0003101,4.14e-10,22;UBERON:0000079,4.14e-10,22;UBERON:0000076,1.69e-07,8 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0764134057479513,0,0.0787107813136792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196468613246569,0,0.370784442784429,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.23486899728753,0,0,0,0,0,0,0,0,0,0,0,0,0.438977620880838,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132529768321485,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.44331342025273,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.791951872933429,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154209693802656,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.290033387828457,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18714054040822,0,0.121360521749513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.02193298195737,0,0,0,0.19606253431774,0,0,0,0,0.163232808159148,0,0,0,0,0,0,0,0.104421949505455,0,0,0,0,0,0,0,0,0,0,0,0.103688191397247,0,0,0,0,0,0,0,0.0979923974143777,0.0870592065804026,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.124252535565433,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0846733320657845,0,0,0.321506296930038,0.275078873194468,0.415440338029185,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.115525666150338,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127762427639595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.101988829741982,0,0,0,1.51557396436479,2.67964130156179,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.320568492303233 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0764134057479513,0,0.0787107813136792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196468613246569,0,0.370784442784429,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.23486899728753,0,0,0,0,0,0,0,0,0,0,0,0,0.438977620880838,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132529768321485,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.44331342025273,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.791951872933429,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154209693802656,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.290033387828457,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18714054040822,0,0.121360521749513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.02193298195737,0,0,0,0.19606253431774,0,0,0,0,0.163232808159148,0,0,0,0,0,0,0,0.104421949505455,0,0,0,0,0,0,0,0,0,0,0,0.103688191397247,0,0,0,0,0,0,0,0.0979923974143777,0.0870592065804026,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.124252535565433,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0846733320657845,0,0,0.321506296930038,0.275078873194468,0.415440338029185,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.115525666150338,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127762427639595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.101988829741982,0,0,0,1.51557396436479,2.67964130156179,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.320568492303233 | ||
|short_description=p7@RPS3A | |short_description=p7@RPS3A | ||
}} | }} |
Latest revision as of 02:23, 16 September 2015
Short description: | p7@RPS3A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_7_at_RPS3A_5end |
Coexpression cluster: | C1_testis_epididymis_embryonic_medulla_pituitary_trachea_caudate |
Association with transcript: | -157bp_to_ENST00000274065_5end |
EntrezGene: | RPS3A |
HGNC: | 10421 |
UniProt: | P61247 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
crystallin accumulating cell | 1.13e-13 | 4 |
vertebrate lens cell | 1.13e-13 | 4 |
lens epithelial cell | 1.13e-13 | 4 |
Ontology term | p-value | n |
---|---|---|
testis | 8.65e-26 | 8 |
male reproductive organ | 4.28e-19 | 11 |
cuboidal epithelium | 1.13e-13 | 4 |
transparent eye structure | 1.13e-13 | 4 |
simple cuboidal epithelium | 1.13e-13 | 4 |
cranial placode | 1.13e-13 | 4 |
lens of camera-type eye | 1.13e-13 | 4 |
epithelium of lens | 1.13e-13 | 4 |
lens placode | 1.13e-13 | 4 |
lens vesicle | 1.13e-13 | 4 |
gonad | 1.53e-10 | 21 |
indifferent external genitalia | 1.53e-10 | 21 |
indifferent gonad | 1.53e-10 | 21 |
gonad primordium | 1.53e-10 | 21 |
external genitalia | 4.14e-10 | 22 |
male organism | 4.14e-10 | 22 |
male reproductive system | 4.14e-10 | 22 |
external ectoderm | 1.69e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
chronic leukemia | 1.80e-07 | 8 |