FFCP PHASE1:Hg19::chr1:111217603..111217616,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr1:111217603..111217616,- to FFCP PHASE1:Hg19::chr1:111217603..111217616,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=3738 | |EntrezGene=3738 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6221 | |HGNC=6221 | ||
|TSSclassifier=strong | |||
|UniProt=P22001,Q6P2D3,B2RA23 | |UniProt=P22001,Q6P2D3,B2RA23 | ||
|association_with_transcript=38bp_to_ENST00000369769,NM_002232,uc001dzv.1_5end | |||
|cluster_id=chr1:111217603..111217616,- | |||
|coexpression_cluster_id=C18 | |||
|description=CAGE_peak_5_at_KCNA3_5end | |||
|id=chr1:111217603..111217616,- | |||
|ontology_enrichment_celltype=CL:0000542!2.89e-31!53;CL:0000051!2.89e-31!53;CL:0000838!2.15e-30!52;CL:0002087!4.99e-29!119;CL:0000738!3.18e-26!140;CL:0002031!2.47e-22!124;CL:0000791!7.11e-22!18;CL:0000789!7.11e-22!18;CL:0002420!7.11e-22!18;CL:0002419!7.11e-22!18;CL:0000790!7.11e-22!18;CL:0000084!1.76e-21!25;CL:0000827!1.76e-21!25;CL:0000037!1.01e-20!172;CL:0000566!1.01e-20!172;CL:0000988!8.05e-20!182;CL:0002032!3.14e-17!165;CL:0000837!3.14e-17!165;CL:0000625!2.59e-14!11;CL:0000236!2.30e-11!14;CL:0000945!6.16e-10!24;CL:0000826!6.16e-10!24;CL:0000624!1.09e-08!6 | |||
|ontology_enrichment_celltype_v019=CL:0000791;1.84e-44;18!CL:0000789;1.84e-44;18!CL:0002419;1.84e-44;18!CL:0000625;6.55e-33;11!CL:0000084;5.57e-31;25!CL:0000542;8.94e-19;53!CL:0000624;5.08e-16;6!CL:0000236;5.85e-13;13!CL:0000226;1.18e-11;3!CL:0000842;1.18e-11;3!CL:0002087;5.64e-07;104 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,7.98e-44,18;CL:0000789,7.98e-44,18;CL:0002420,7.98e-44,18;CL:0002419,7.98e-44,18;CL:0000790,7.98e-44,18;CL:0000838,2.09e-32,52;CL:0000625,2.82e-32,11;CL:0000542,1.10e-31,53;CL:0000051,1.10e-31,53;CL:0000084,1.57e-30,25;CL:0000827,1.57e-30,25;CL:0002087,2.38e-18,115;CL:0000624,5.76e-16,6;CL:0000738,7.65e-16,136;CL:0002031,3.73e-13,120;CL:0000236,3.93e-12,14;CL:0000226,9.32e-12,3;CL:0000842,9.32e-12,3;CL:0000037,1.54e-11,168;CL:0000988,1.29e-10,177;CL:0002032,2.32e-08,161;CL:0000837,2.32e-08,161 | |||
|ontology_enrichment_development_v019=CL:0000790;1.84e-44;18!CL:0000051;8.94e-19;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!1.02e-14!115;UBERON:0001893!4.38e-12!34;UBERON:0002780!5.44e-12!41;UBERON:0001890!5.44e-12!41;UBERON:0006240!5.44e-12!41;UBERON:0003080!1.58e-11!42;UBERON:0002791!2.51e-11!33;UBERON:0002020!4.62e-11!34;UBERON:0003528!4.62e-11!34;UBERON:0001869!4.74e-11!32;UBERON:0000178!9.31e-11!15;UBERON:0000179!9.31e-11!15;UBERON:0000463!9.31e-11!15;UBERON:0001049!1.02e-10!57;UBERON:0005068!1.02e-10!57;UBERON:0006241!1.02e-10!57;UBERON:0007135!1.02e-10!57;UBERON:0002619!2.98e-10!22;UBERON:0002616!4.59e-10!59;UBERON:0001950!5.82e-10!20;UBERON:0000956!1.57e-09!25;UBERON:0000203!1.57e-09!25;UBERON:0001017!4.05e-09!82;UBERON:0002390!6.26e-09!102;UBERON:0003061!6.26e-09!102;UBERON:0005743!8.69e-09!86;UBERON:0000955!1.03e-08!69;UBERON:0006238!1.03e-08!69;UBERON:0002193!2.08e-08!112;UBERON:0000073!4.88e-08!94;UBERON:0001016!4.88e-08!94 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;3.01e-18;15!UBERON:0000179;3.01e-18;15!UBERON:0000463;3.01e-18;15!UBERON:0002390;4.75e-11;32!UBERON:0002370;1.87e-09;2!UBERON:0005058;1.87e-09;2!UBERON:0009113;1.87e-09;2!UBERON:0002193;1.83e-07;42 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,1.31e-18,15;UBERON:0000179,1.31e-18,15;UBERON:0000463,1.31e-18,15;UBERON:0002370,1.15e-09,4;UBERON:0005058,1.15e-09,4;UBERON:0009113,1.15e-09,4;UBERON:0003295,1.15e-09,4;UBERON:0005562,1.15e-09,4 | |||
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| ||
|short_description=p5@KCNA3 | |||
}} | }} |
Latest revision as of 01:54, 16 September 2015
Short description: | p5@KCNA3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_KCNA3_5end |
Coexpression cluster: | C18_CD4_CD8_thymus_Whole_Peripheral_Natural_blood |
Association with transcript: | 38bp_to_ENST00000369769, NM_002232, uc001dzv.1_5end |
EntrezGene: | KCNA3 |
HGNC: | 6221 |
UniProt: | P22001Q6P2D3B2RA23 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 7.98e-44 | 18 |
alpha-beta T cell | 7.98e-44 | 18 |
immature T cell | 7.98e-44 | 18 |
mature T cell | 7.98e-44 | 18 |
immature alpha-beta T cell | 7.98e-44 | 18 |
lymphoid lineage restricted progenitor cell | 2.09e-32 | 52 |
CD8-positive, alpha-beta T cell | 2.82e-32 | 11 |
lymphocyte | 1.10e-31 | 53 |
common lymphoid progenitor | 1.10e-31 | 53 |
T cell | 1.57e-30 | 25 |
pro-T cell | 1.57e-30 | 25 |
nongranular leukocyte | 2.38e-18 | 115 |
CD4-positive, alpha-beta T cell | 5.76e-16 | 6 |
leukocyte | 7.65e-16 | 136 |
hematopoietic lineage restricted progenitor cell | 3.73e-13 | 120 |
B cell | 3.93e-12 | 14 |
single nucleate cell | 9.32e-12 | 3 |
mononuclear cell | 9.32e-12 | 3 |
hematopoietic stem cell | 1.54e-11 | 168 |
hematopoietic cell | 1.29e-10 | 177 |
hematopoietic oligopotent progenitor cell | 2.32e-08 | 161 |
hematopoietic multipotent progenitor cell | 2.32e-08 | 161 |
Ontology term | p-value | n |
---|---|---|
blood | 1.31e-18 | 15 |
haemolymphatic fluid | 1.31e-18 | 15 |
organism substance | 1.31e-18 | 15 |
thymus | 1.15e-09 | 4 |
hemolymphoid system gland | 1.15e-09 | 4 |
thymic region | 1.15e-09 | 4 |
pharyngeal gland | 1.15e-09 | 4 |
thymus primordium | 1.15e-09 | 4 |