FFCP PHASE1:Hg19::chr1:111217352..111217366,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3738 | |EntrezGene=3738 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6221 | |HGNC=6221 | ||
|TSSclassifier=strong | |||
|UniProt=P22001 | |UniProt=P22001 | ||
|association_with_transcript=0bp_to_M85217_5end | |association_with_transcript=0bp_to_M85217_5end | ||
|cluster_id=chr1:111217352..111217366,- | |||
|coexpression_cluster_id=C18 | |coexpression_cluster_id=C18 | ||
|description=CAGE_peak_3_at_KCNA3_5end | |description=CAGE_peak_3_at_KCNA3_5end | ||
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|ontology_enrichment_celltype=CL:0002087!1.15e-33!119;CL:0000738!5.76e-31!140;CL:0000542!2.56e-30!53;CL:0000051!2.56e-30!53;CL:0000838!1.52e-29!52;CL:0002031!2.28e-26!124;CL:0000791!7.89e-25!18;CL:0000789!7.89e-25!18;CL:0002420!7.89e-25!18;CL:0002419!7.89e-25!18;CL:0000790!7.89e-25!18;CL:0000084!2.53e-24!25;CL:0000827!2.53e-24!25;CL:0000988!1.16e-23!182;CL:0000037!1.78e-23!172;CL:0000566!1.78e-23!172;CL:0002032!1.79e-21!165;CL:0000837!1.79e-21!165;CL:0000625!3.89e-16!11;CL:0002057!2.11e-09!42;CL:0000624!2.45e-09!6;CL:0000080!2.12e-08!6;CL:0000860!2.39e-08!45 | |ontology_enrichment_celltype=CL:0002087!1.15e-33!119;CL:0000738!5.76e-31!140;CL:0000542!2.56e-30!53;CL:0000051!2.56e-30!53;CL:0000838!1.52e-29!52;CL:0002031!2.28e-26!124;CL:0000791!7.89e-25!18;CL:0000789!7.89e-25!18;CL:0002420!7.89e-25!18;CL:0002419!7.89e-25!18;CL:0000790!7.89e-25!18;CL:0000084!2.53e-24!25;CL:0000827!2.53e-24!25;CL:0000988!1.16e-23!182;CL:0000037!1.78e-23!172;CL:0000566!1.78e-23!172;CL:0002032!1.79e-21!165;CL:0000837!1.79e-21!165;CL:0000625!3.89e-16!11;CL:0002057!2.11e-09!42;CL:0000624!2.45e-09!6;CL:0000080!2.12e-08!6;CL:0000860!2.39e-08!45 | ||
|ontology_enrichment_celltype_v019=CL:0000791;4.35e-50;18!CL:0000789;4.35e-50;18!CL:0002419;4.35e-50;18!CL:0000084;4.14e-43;25!CL:0000625;3.26e-35;11!CL:0000542;5.33e-27;53!CL:0000624;1.23e-19;6!CL:0000623;5.99e-11;3!CL:0000898;1.11e-10;3!CL:0000236;2.27e-10;13!CL:0000226;4.90e-10;3!CL:0000842;4.90e-10;3!CL:0002087;2.59e-08;104!CL:0000815;1.37e-07;2!CL:0000792;1.37e-07;2!CL:0002677;1.37e-07;2 | |ontology_enrichment_celltype_v019=CL:0000791;4.35e-50;18!CL:0000789;4.35e-50;18!CL:0002419;4.35e-50;18!CL:0000084;4.14e-43;25!CL:0000625;3.26e-35;11!CL:0000542;5.33e-27;53!CL:0000624;1.23e-19;6!CL:0000623;5.99e-11;3!CL:0000898;1.11e-10;3!CL:0000236;2.27e-10;13!CL:0000226;4.90e-10;3!CL:0000842;4.90e-10;3!CL:0002087;2.59e-08;104!CL:0000815;1.37e-07;2!CL:0000792;1.37e-07;2!CL:0002677;1.37e-07;2 | ||
|ontology_enrichment_celltype_v019_2=CL:0000791,3.27e-50,18;CL:0000789,3.27e-50,18;CL:0002420,3.27e-50,18;CL:0002419,3.27e-50,18;CL:0000790,3.27e-50,18;CL:0000838,4.08e-45,52;CL:0000542,4.12e-44,53;CL:0000051,4.12e-44,53;CL:0000084,3.72e-43,25;CL:0000827,3.72e-43,25;CL:0000625,2.10e-35,11;CL:0002087,6.35e-25,115;CL:0000738,4.43e-24,136;CL:0000988,8.43e-20,177;CL:0000624,1.40e-19,6;CL:0002031,6.70e-19,120;CL:0000037,7.57e-19,168;CL:0002032,2.55e-16,161;CL:0000837,2.55e-16,161;CL:0000623,6.62e-11,3;CL:0000825,6.62e-11,3;CL:0000898,1.15e-10,3;CL:0000226,4.21e-10,3;CL:0000842,4.21e-10,3;CL:0000236,8.68e-10,14;CL:0000815,1.37e-07,2;CL:0000792,1.37e-07,2;CL:0002677,1.37e-07,2 | |||
|ontology_enrichment_development_v019=CL:0000790;4.35e-50;18!CL:0000051;5.33e-27;53 | |ontology_enrichment_development_v019=CL:0000790;4.35e-50;18!CL:0000051;5.33e-27;53 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!2.90e-14!102;UBERON:0003061!2.90e-14!102;UBERON:0002193!2.65e-13!112;UBERON:0000178!3.94e-13!15;UBERON:0000179!3.94e-13!15;UBERON:0000463!3.94e-13!15;UBERON:0007023!6.15e-13!115;UBERON:0002020!1.91e-07!34;UBERON:0003528!1.91e-07!34;UBERON:0001869!2.46e-07!32 | |ontology_enrichment_uberon=UBERON:0002390!2.90e-14!102;UBERON:0003061!2.90e-14!102;UBERON:0002193!2.65e-13!112;UBERON:0000178!3.94e-13!15;UBERON:0000179!3.94e-13!15;UBERON:0000463!3.94e-13!15;UBERON:0007023!6.15e-13!115;UBERON:0002020!1.91e-07!34;UBERON:0003528!1.91e-07!34;UBERON:0001869!2.46e-07!32 | ||
|ontology_enrichment_uberon_v019=UBERON:0000178;6.27e-15;15!UBERON:0000179;6.27e-15;15!UBERON:0000463;6.27e-15;15!UBERON:0002390;6.24e-11;32!UBERON:0002370;5.56e-07;2!UBERON:0005058;5.56e-07;2!UBERON:0009113;5.56e-07;2 | |ontology_enrichment_uberon_v019=UBERON:0000178;6.27e-15;15!UBERON:0000179;6.27e-15;15!UBERON:0000463;6.27e-15;15!UBERON:0002390;6.24e-11;32!UBERON:0002370;5.56e-07;2!UBERON:0005058;5.56e-07;2!UBERON:0009113;5.56e-07;2 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,4.68e-15,15;UBERON:0000179,4.68e-15,15;UBERON:0000463,4.68e-15,15;UBERON:0002370,1.60e-07,4;UBERON:0005058,1.60e-07,4;UBERON:0009113,1.60e-07,4;UBERON:0003295,1.60e-07,4;UBERON:0005562,1.60e-07,4 | |||
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| ||
|short_description=p3@KCNA3 | |short_description=p3@KCNA3 | ||
}} | }} |
Latest revision as of 01:50, 16 September 2015
Short description: | p3@KCNA3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_KCNA3_5end |
Coexpression cluster: | C18_CD4_CD8_thymus_Whole_Peripheral_Natural_blood |
Association with transcript: | 0bp_to_M85217_5end |
EntrezGene: | KCNA3 |
HGNC: | 6221 |
UniProt: | P22001 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 3.27e-50 | 18 |
alpha-beta T cell | 3.27e-50 | 18 |
immature T cell | 3.27e-50 | 18 |
mature T cell | 3.27e-50 | 18 |
immature alpha-beta T cell | 3.27e-50 | 18 |
lymphoid lineage restricted progenitor cell | 4.08e-45 | 52 |
lymphocyte | 4.12e-44 | 53 |
common lymphoid progenitor | 4.12e-44 | 53 |
T cell | 3.72e-43 | 25 |
pro-T cell | 3.72e-43 | 25 |
CD8-positive, alpha-beta T cell | 2.10e-35 | 11 |
nongranular leukocyte | 6.35e-25 | 115 |
leukocyte | 4.43e-24 | 136 |
hematopoietic cell | 8.43e-20 | 177 |
CD4-positive, alpha-beta T cell | 1.40e-19 | 6 |
hematopoietic lineage restricted progenitor cell | 6.70e-19 | 120 |
hematopoietic stem cell | 7.57e-19 | 168 |
hematopoietic oligopotent progenitor cell | 2.55e-16 | 161 |
hematopoietic multipotent progenitor cell | 2.55e-16 | 161 |
natural killer cell | 6.62e-11 | 3 |
pro-NK cell | 6.62e-11 | 3 |
naive T cell | 1.15e-10 | 3 |
single nucleate cell | 4.21e-10 | 3 |
mononuclear cell | 4.21e-10 | 3 |
B cell | 8.68e-10 | 14 |
regulatory T cell | 1.37e-07 | 2 |
CD4-positive, CD25-positive, alpha-beta regulatory T cell | 1.37e-07 | 2 |
naive regulatory T cell | 1.37e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
blood | 4.68e-15 | 15 |
haemolymphatic fluid | 4.68e-15 | 15 |
organism substance | 4.68e-15 | 15 |
thymus | 1.60e-07 | 4 |
hemolymphoid system gland | 1.60e-07 | 4 |
thymic region | 1.60e-07 | 4 |
pharyngeal gland | 1.60e-07 | 4 |
thymus primordium | 1.60e-07 | 4 |