FFCP PHASE1:Hg19::chr1:111217321..111217341,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr1:111217321..111217341,- to FFCP PHASE1:Hg19::chr1:111217321..111217341,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=3738 | |EntrezGene=3738 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6221 | |HGNC=6221 | ||
|TSSclassifier=strong | |||
|UniProt=P22001 | |UniProt=P22001 | ||
|association_with_transcript=20bp_to_M85217_5end | |||
|cluster_id=chr1:111217321..111217341,- | |||
|coexpression_cluster_id=C18 | |||
|description=CAGE_peak_4_at_KCNA3_5end | |||
|id=chr1:111217321..111217341,- | |||
|ontology_enrichment_celltype=CL:0000791!4.46e-25!18;CL:0000789!4.46e-25!18;CL:0002420!4.46e-25!18;CL:0002419!4.46e-25!18;CL:0000790!4.46e-25!18;CL:0002087!4.70e-22!119;CL:0000738!3.41e-21!140;CL:0000084!3.04e-20!25;CL:0000827!3.04e-20!25;CL:0000838!1.44e-18!52;CL:0000542!5.14e-18!53;CL:0000051!5.14e-18!53;CL:0002031!2.56e-17!124;CL:0000988!4.77e-17!182;CL:0000037!1.43e-16!172;CL:0000566!1.43e-16!172;CL:0000625!7.07e-16!11;CL:0002032!3.73e-14!165;CL:0000837!3.73e-14!165;CL:0000624!6.00e-10!6;CL:0002057!4.13e-09!42;CL:0000080!6.22e-09!6;CL:0000860!4.24e-08!45 | |||
|ontology_enrichment_celltype_v019=CL:0000791;5.39e-50;18!CL:0000789;5.39e-50;18!CL:0002419;5.39e-50;18!CL:0000084;5.78e-35;25!CL:0000625;1.43e-29;11!CL:0000624;9.14e-26;6!CL:0000542;7.77e-14;53!CL:0000623;7.82e-14;3!CL:0000898;8.69e-14;3!CL:0000815;1.19e-09;2!CL:0000792;1.19e-09;2!CL:0002677;1.19e-09;2!CL:0002087;5.26e-07;104 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,3.37e-50,18;CL:0000789,3.37e-50,18;CL:0002420,3.37e-50,18;CL:0002419,3.37e-50,18;CL:0000790,3.37e-50,18;CL:0000084,4.15e-35,25;CL:0000827,4.15e-35,25;CL:0000625,8.89e-30,11;CL:0000624,9.41e-26,6;CL:0000838,4.94e-25,52;CL:0000542,1.80e-24,53;CL:0000051,1.80e-24,53;CL:0002087,5.49e-15,115;CL:0000623,7.85e-14,3;CL:0000825,7.85e-14,3;CL:0000898,8.91e-14,3;CL:0000738,5.42e-13,136;CL:0000988,1.33e-11,177;CL:0002031,1.69e-11,120;CL:0000037,2.18e-10,168;CL:0000815,1.24e-09,2;CL:0000792,1.24e-09,2;CL:0002677,1.24e-09,2;CL:0002032,4.64e-09,161;CL:0000837,4.64e-09,161 | |||
|ontology_enrichment_development_v019=CL:0000790;5.39e-50;18!CL:0000051;7.77e-14;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000178!5.79e-17!15;UBERON:0000179!5.79e-17!15;UBERON:0000463!5.79e-17!15;UBERON:0001893!2.62e-15!34;UBERON:0001950!3.68e-15!20;UBERON:0007023!3.81e-15!115;UBERON:0002619!5.80e-15!22;UBERON:0002791!2.57e-14!33;UBERON:0001869!3.99e-14!32;UBERON:0002390!5.57e-14!102;UBERON:0003061!5.57e-14!102;UBERON:0002020!6.40e-14!34;UBERON:0003528!6.40e-14!34;UBERON:0002193!3.73e-13!112;UBERON:0000956!1.41e-12!25;UBERON:0000203!1.41e-12!25;UBERON:0002780!1.60e-11!41;UBERON:0001890!1.60e-11!41;UBERON:0006240!1.60e-11!41;UBERON:0003080!4.35e-11!42;UBERON:0001049!2.25e-10!57;UBERON:0005068!2.25e-10!57;UBERON:0006241!2.25e-10!57;UBERON:0007135!2.25e-10!57;UBERON:0002616!7.74e-09!59;UBERON:0000200!1.33e-07!6;UBERON:0001871!4.17e-07!7;UBERON:0000955!5.54e-07!69;UBERON:0006238!5.54e-07!69;UBERON:0003056!6.77e-07!61 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;8.94e-25;15!UBERON:0000179;8.94e-25;15!UBERON:0000463;8.94e-25;15!UBERON:0002390;1.21e-14;32!UBERON:0002193;3.81e-09;42 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,7.90e-25,15;UBERON:0000179,7.90e-25,15;UBERON:0000463,7.90e-25,15 | |||
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| ||
|short_description=p4@KCNA3 | |||
}} | }} |
Latest revision as of 01:50, 16 September 2015
Short description: | p4@KCNA3 |
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Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_KCNA3_5end |
Coexpression cluster: | C18_CD4_CD8_thymus_Whole_Peripheral_Natural_blood |
Association with transcript: | 20bp_to_M85217_5end |
EntrezGene: | KCNA3 |
HGNC: | 6221 |
UniProt: | P22001 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 3.37e-50 | 18 |
alpha-beta T cell | 3.37e-50 | 18 |
immature T cell | 3.37e-50 | 18 |
mature T cell | 3.37e-50 | 18 |
immature alpha-beta T cell | 3.37e-50 | 18 |
T cell | 4.15e-35 | 25 |
pro-T cell | 4.15e-35 | 25 |
CD8-positive, alpha-beta T cell | 8.89e-30 | 11 |
CD4-positive, alpha-beta T cell | 9.41e-26 | 6 |
lymphoid lineage restricted progenitor cell | 4.94e-25 | 52 |
lymphocyte | 1.80e-24 | 53 |
common lymphoid progenitor | 1.80e-24 | 53 |
nongranular leukocyte | 5.49e-15 | 115 |
natural killer cell | 7.85e-14 | 3 |
pro-NK cell | 7.85e-14 | 3 |
naive T cell | 8.91e-14 | 3 |
leukocyte | 5.42e-13 | 136 |
hematopoietic cell | 1.33e-11 | 177 |
hematopoietic lineage restricted progenitor cell | 1.69e-11 | 120 |
hematopoietic stem cell | 2.18e-10 | 168 |
regulatory T cell | 1.24e-09 | 2 |
CD4-positive, CD25-positive, alpha-beta regulatory T cell | 1.24e-09 | 2 |
naive regulatory T cell | 1.24e-09 | 2 |
hematopoietic oligopotent progenitor cell | 4.64e-09 | 161 |
hematopoietic multipotent progenitor cell | 4.64e-09 | 161 |
Ontology term | p-value | n |
---|---|---|
blood | 7.90e-25 | 15 |
haemolymphatic fluid | 7.90e-25 | 15 |
organism substance | 7.90e-25 | 15 |