FFCP PHASE1:Hg19::chr2:235860690..235860708,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=23677 | |EntrezGene=23677 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10826 | |HGNC=10826 | ||
|TSSclassifier=strong | |||
|UniProt=C9JF25 | |UniProt=C9JF25 | ||
|association_with_transcript=-11bp_to_,11bp_to_ENST00000416021,ENST00000484097_5end | |association_with_transcript=-11bp_to_,11bp_to_ENST00000416021,ENST00000484097_5end | ||
|cluster_id=chr2:235860690..235860708,+ | |||
|description=CAGE_peak_2_at_SH3BP4_5end | |description=CAGE_peak_2_at_SH3BP4_5end | ||
|id=chr2:235860690..235860708,+ | |id=chr2:235860690..235860708,+ | ||
Latest revision as of 01:30, 16 September 2015
| Short description: | p2@SH3BP4 |
|---|---|
| Species: | Human (Homo sapiens) |
| DPI dataset: | Robust |
| TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
| DHS support(Yes/No): | Yes |
| Description: | CAGE_peak_2_at_SH3BP4_5end |
| Coexpression cluster: | NA |
| Association with transcript: | -11bp_to_, 11bp_to_ENST00000416021, ENST00000484097_5end |
| EntrezGene: | SH3BP4 |
| HGNC: | 10826 |
| UniProt: | C9JF25 |
| Genome view: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
| Sample | p2@SH3BP4 |
|---|
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- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| embryonic cell | 2.38e-20 | 250 |
| mesodermal cell | 1.36e-15 | 121 |
| fibroblast | 1.18e-14 | 76 |
| muscle precursor cell | 7.97e-09 | 58 |
| myoblast | 7.97e-09 | 58 |
| multi-potent skeletal muscle stem cell | 7.97e-09 | 58 |
| smooth muscle cell | 1.12e-08 | 43 |
| smooth muscle myoblast | 1.12e-08 | 43 |
| muscle cell | 2.31e-08 | 55 |
| electrically responsive cell | 2.91e-08 | 61 |
Showing 1 to 10 of 12 entries
| Ontology term | p-value | n |
|---|---|---|
| epithelium | 1.29e-21 | 306 |
| cell layer | 2.44e-21 | 309 |
| anatomical conduit | 8.49e-19 | 240 |
| epithelial tube | 8.36e-18 | 117 |
| tube | 8.11e-16 | 192 |
| unilaminar epithelium | 1.67e-14 | 148 |
| vasculature | 1.23e-13 | 78 |
| vascular system | 1.23e-13 | 78 |
| mesenchyme | 2.29e-12 | 160 |
| entire embryonic mesenchyme | 2.29e-12 | 160 |
Showing 1 to 10 of 57 entries
