FFCP PHASE1:Hg19::chr17:48273307..48273347,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1277 | |EntrezGene=1277 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2197 | |HGNC=2197 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-281bp_to_ENST00000471344_5end | |association_with_transcript=-281bp_to_ENST00000471344_5end | ||
|cluster_id=chr17:48273307..48273347,- | |||
|coexpression_cluster_id=C59 | |||
|description=CAGE_peak_35_at_COL1A1_5end | |description=CAGE_peak_35_at_COL1A1_5end | ||
|id=chr17:48273307..48273347,- | |id=chr17:48273307..48273347,- | ||
|ontology_enrichment_celltype=CL:0000055!3.49e-40!180;CL:0000057!7.23e-24!75;CL:0000183!7.11e-18!59;CL:0000680!1.74e-17!57;CL:0000056!1.74e-17!57;CL:0000355!1.74e-17!57;CL:0000187!1.19e-16!54;CL:0000393!2.26e-14!60;CL:0000211!2.26e-14!60;CL:0000192!1.77e-13!42;CL:0000514!1.77e-13!42;CL:0000048!7.61e-13!430;CL:0000723!3.96e-12!436;CL:0000034!3.94e-11!444;CL:0002371!1.08e-09!591;CL:0000144!1.40e-09!625;CL:0000359!2.71e-09!32;CL:0002334!2.55e-08!12;CL:0000499!7.44e-08!27;CL:0000222!1.36e-07!119;CL:0002494!1.59e-07!16;CL:0002620!1.85e-07!23;CL:0000327!3.99e-07!14 | |ontology_enrichment_celltype=CL:0000055!3.49e-40!180;CL:0000057!7.23e-24!75;CL:0000183!7.11e-18!59;CL:0000680!1.74e-17!57;CL:0000056!1.74e-17!57;CL:0000355!1.74e-17!57;CL:0000187!1.19e-16!54;CL:0000393!2.26e-14!60;CL:0000211!2.26e-14!60;CL:0000192!1.77e-13!42;CL:0000514!1.77e-13!42;CL:0000048!7.61e-13!430;CL:0000723!3.96e-12!436;CL:0000034!3.94e-11!444;CL:0002371!1.08e-09!591;CL:0000144!1.40e-09!625;CL:0000359!2.71e-09!32;CL:0002334!2.55e-08!12;CL:0000499!7.44e-08!27;CL:0000222!1.36e-07!119;CL:0002494!1.59e-07!16;CL:0002620!1.85e-07!23;CL:0000327!3.99e-07!14 | ||
|ontology_enrichment_celltype_v019=CL:0002334;1.09e-10;12!CL:0000499;1.92e-09;28!CL:0000057;3.91e-09;73!CL:0000134;5.00e-09;55!CL:0002320;1.56e-08;188!CL:0000327;3.72e-08;15!CL:0000048;6.67e-08;58!CL:0002494;1.07e-07;16!CL:0000723;1.49e-07;61 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,2.04e-24,76;CL:0000048,7.39e-17,427;CL:0000723,5.12e-16,433;CL:0000034,6.10e-15,441;CL:0002320,2.22e-11,361;CL:0002334,1.41e-10,12;CL:0000680,4.04e-10,58;CL:0000056,4.04e-10,58;CL:0000355,4.04e-10,58;CL:0000187,8.87e-10,55;CL:0000134,1.64e-09,354;CL:0000499,1.77e-09,28;CL:0000327,3.48e-08,15;CL:0000393,6.54e-08,61;CL:0000211,6.54e-08,61;CL:0000219,7.00e-08,386;CL:0000192,9.26e-08,43;CL:0000514,9.26e-08,43;CL:0002494,1.22e-07,16 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!2.66e-18!83;UBERON:0002329!2.66e-18!83;UBERON:0003077!2.66e-18!83;UBERON:0003059!2.66e-18!83;UBERON:0007282!2.66e-18!83;UBERON:0009618!2.66e-18!83;UBERON:0007285!2.66e-18!83;UBERON:0002385!1.37e-17!63;UBERON:0001015!1.37e-17!63;UBERON:0000383!1.37e-17!63;UBERON:0001134!1.44e-17!61;UBERON:0002036!1.44e-17!61;UBERON:0003082!1.44e-17!61;UBERON:0004290!5.94e-16!70;UBERON:0005256!1.27e-13!143;UBERON:0000486!3.09e-12!82;UBERON:0002100!5.99e-10!216;UBERON:0004872!6.10e-09!84;UBERON:0000475!1.02e-08!365;UBERON:0000490!1.93e-07!138;UBERON:0001013!6.70e-07!14;UBERON:0003102!8.21e-07!95;UBERON:0000948!9.28e-07!24;UBERON:0005498!9.28e-07!24;UBERON:0004140!9.28e-07!24;UBERON:0009881!9.28e-07!24;UBERON:0004141!9.28e-07!24;UBERON:0003084!9.28e-07!24;UBERON:0007005!9.28e-07!24;UBERON:0004139!9.28e-07!24;UBERON:0004291!9.28e-07!24 | |||
|ontology_enrichment_uberon_v019=UBERON:0002384;5.16e-09;198!UBERON:0003688;6.79e-08;6!UBERON:0002358;6.79e-08;6!UBERON:0003684;6.79e-08;6!UBERON:0001178;6.79e-08;6!UBERON:0004457;1.05e-07;9!UBERON:0000042;1.05e-07;9!UBERON:0001013;4.39e-07;14 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002384,1.67e-11,371;UBERON:0001134,9.51e-11,62;UBERON:0002036,9.51e-11,62;UBERON:0003082,9.51e-11,62;UBERON:0002385,4.46e-10,64;UBERON:0001015,4.46e-10,64;UBERON:0000383,4.46e-10,64;UBERON:0007524,6.33e-09,73;UBERON:0002329,1.30e-08,71;UBERON:0003059,1.30e-08,71;UBERON:0007282,1.30e-08,71;UBERON:0004290,1.30e-08,71;UBERON:0009618,1.30e-08,71;UBERON:0003077,2.37e-08,72;UBERON:0007285,2.37e-08,72;UBERON:0007503,5.08e-08,78;UBERON:0003688,7.52e-08,6;UBERON:0002358,7.52e-08,6;UBERON:0003684,7.52e-08,6;UBERON:0001178,7.52e-08,6;UBERON:0001013,4.57e-07,14;UBERON:0000486,4.74e-07,83 | |||
|phase1_expression=12.3541297903979,10.7050261945492,13.3906683891173,14.0102617694383,19.6662881548007,13.9574163856059,15.1979926900986,1.26343974685366,0.261185628199839,0.491467873003018,1.39560233594486,0,2.11013582582763,1.23766352960047,1.98838425436749,2.01697543935533,0.602694528023977,0,0.975865597581014,1.96993692922861,3.4680117511523,3.44800193625897,0,0.273748850145768,0.502170558379211,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.201606743224732,0,0,4.87613732627923,2.01210257911091,2.55725123687061,12.2889311810753,14.5387994084408,3.76600949298142,7.95285947051099,10.2193322763554,0.378139268656271,2.88248216701333,1.40535657109002,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,19.3819061161174,8.48424428152684,1.45650098894541,25.5284592466444,4.61068896857864,3.36406560085384,3.20246987189115,8.38669664618344,1.55605517699883,1.61652806483626,1.30769522490767,3.93529311876822,2.88087962239999,0,0,0,0.597794722207204,0.469737994575059,0.323745888736263,0.140450806702248,0.61246251376468,0.491337269247072,1.03325781175765,40.3920971475898,25.2212267864128,7.28129089550421,9.3420358436111,0.168336113954066,0.500474079487857,0.554128230968366,2.63386572528503,5.82326812018137,16.2257103619125,0.907457465280168,3.94657198515496,6.62027905337559,7.84148034290379,2.70081986475962,4.225153698776,4.12224864073007,5.3973888336161,4.89451363499672,4.48210223741514,3.28163906517349,5.24684422261106,5.65761198865842,9.9402685904652,1.91428986632517,1.86516651541536,0,0,0,0,0,0,0.10366105501537,0,0,0,1.28648187638577,0,1.39310378409594,1.44375896333917,0,0,0,0,0,0,0,0,0,0,2.80483547606892,6.173610169971,14.7008711385542,0,0,0,0,0,0.857839051492628,0.109750285408626,0,0,0,0.325808305310325,1.03993478527958,1.44331342025273,0.34779121492523,0.70445216541493,0,0,0,0,0,0,0,0,0,0.503946384596579,0.141775097242386,0,0,0.383382679165211,0,0,0.414656231081544,0,0.12624243342638,0,0,0,0,0.102827492703324,0,0,2.13049060256185,2.61576041299968,0.95339771567235,5.55868377758444,3.57656445851882,0.845302752556,3.72313363218819,7.28052058379563,1.28603687131071,0,1.5985330740966,4.14636181608628,16.8212697671347,1.64648067356154,2.28015329005615,4.97548728239564,0.791951872933429,0.904318131178758,0.871533458600294,0.499864955910285,0,0,0,8.62649479769697,17.2292903751171,0,1.30303176000821,1.84928690295345,0.895304816199478,0,0,0,0,0,0,0,0.167516265334349,0,0,0,0,1.10422342547226,1.00034104211935,1.08506009479894,31.1956292296211,22.4820525884424,14.8240270131899,5.50564650465752,10.8340595901979,20.4666753650386,2.0694614258501,1.99267679560631,4.05612170791747,1.56390506042549,7.44044398358414,10.9805895619474,0,0,0,0.909382714338778,6.65741758041988,5.14063498660456,15.3826840847642,5.06424511850606,22.1721474602128,22.1680728212363,7.16390148693385,18.6590548526585,5.93672265779964,1.3878872442239,4.79416658345443,1.06765302817952,1.55776328755086,3.60252173225874,0,0.200506470303285,0,5.28146461557191,6.3731908802351,5.90059867317409,0,0,0,0,0,0,0,0.215915916102139,0,0.812839312631559,2.50844886927427,0,0,0.223874754722178,0,0,0,0.984043937099117,0,0,1.37354197227515,0.165018999841176,0.574265537996172,0.650060246036521,9.64103579064957,1.35339005608971,0.924291702687866,1.07452572308291,0.827019434907183,2.0409846524972,2.90033387828457,0.681813019328807,6.6774026735053,0.826424576804891,0.768760269460425,0,0.2023155617111,1.85938219718914,15.4258049947014,0.6970372701606,1.23213432070436,0.532306030317022,0,1.66791797193528,0.429374660225974,2.232950216158,1.89827654831236,4.38449446024797,2.303080121802,0.42793898803392,3.18203247925937,3.92474320099615,2.15846949099978,5.4907405947211,4.3590588867904,1.2130948894399,3.17020642346017,0.842516912477962,3.41343617362713,0.974853958525138,3.16950440270266,5.18699663350346,13.7163268995101,4.52032466480971,3.30819206127675,0.66343897524122,2.19225442626881,1.15755106853338,2.62357900818653,0.608731130888112,0.92947049429925,1.12678241012897,0.573645408816206,2.35797698431491,0.7133421029625,0.354761064070598,3.79993743535795,2.63435914367922,1.51789269506286,2.44954304171488,0,0.670302275535787,0,0.282431402330337,0,0,0,0,0,0,0,0,0,0,0,0,0.213648142254946,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.23874448473769,0.296964680832639,0,0,0,0,0,0,0.597743964753209,0,0,0,0,10.5753459805015,0,0,0,0.394573622547734,0,0,0,0.0927680981618513,0,0,0,0,0,0,0,0,0,0.173624994933292,0,0,0,0,0,0,0,0,2.00070672109872,0.227884111694002,0,0,0.108647371922008,0.31900115973192,5.12946523050429,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.888241159469,0,0,0,0,12.0386647094818,0,0,0,0,0,4.83962864194656,0.30607276163049,0.379119477770928,0,0,0,0,0,0,0,0,0,0,0,0.873633341210151,0,0,0.0730893170861856,0,0,0.264768380074501,3.84167259326905,0,0,0,0,0.0801588202515337,1.0672649736967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| ||
|short_description=p35@COL1A1 | |short_description=p35@COL1A1 | ||
}} | }} |
Latest revision as of 01:05, 16 September 2015
Short description: | p35@COL1A1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_35_at_COL1A1_5end |
Coexpression cluster: | C59_Smooth_Fibroblast_Mesenchymal_tenocyte_Ewing_skin_hepatic |
Association with transcript: | -281bp_to_ENST00000471344_5end |
EntrezGene: | COL1A1 |
HGNC: | 2197 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 2.04e-24 | 76 |
multi fate stem cell | 7.39e-17 | 427 |
somatic stem cell | 5.12e-16 | 433 |
stem cell | 6.10e-15 | 441 |
connective tissue cell | 2.22e-11 | 361 |
preadipocyte | 1.41e-10 | 12 |
muscle precursor cell | 4.04e-10 | 58 |
myoblast | 4.04e-10 | 58 |
multi-potent skeletal muscle stem cell | 4.04e-10 | 58 |
muscle cell | 8.87e-10 | 55 |
mesenchymal cell | 1.64e-09 | 354 |
stromal cell | 1.77e-09 | 28 |
extracellular matrix secreting cell | 3.48e-08 | 15 |
electrically responsive cell | 6.54e-08 | 61 |
electrically active cell | 6.54e-08 | 61 |
motile cell | 7.00e-08 | 386 |
smooth muscle cell | 9.26e-08 | 43 |
smooth muscle myoblast | 9.26e-08 | 43 |
cardiocyte | 1.22e-07 | 16 |
Ontology term | p-value | n |
---|---|---|
connective tissue | 1.67e-11 | 371 |
skeletal muscle tissue | 9.51e-11 | 62 |
striated muscle tissue | 9.51e-11 | 62 |
myotome | 9.51e-11 | 62 |
muscle tissue | 4.46e-10 | 64 |
musculature | 4.46e-10 | 64 |
musculature of body | 4.46e-10 | 64 |
dense mesenchyme tissue | 6.33e-09 | 73 |
somite | 1.30e-08 | 71 |
presomitic mesoderm | 1.30e-08 | 71 |
presumptive segmental plate | 1.30e-08 | 71 |
dermomyotome | 1.30e-08 | 71 |
trunk paraxial mesoderm | 1.30e-08 | 71 |
paraxial mesoderm | 2.37e-08 | 72 |
presumptive paraxial mesoderm | 2.37e-08 | 72 |
epithelial vesicle | 5.08e-08 | 78 |
omentum | 7.52e-08 | 6 |
peritoneum | 7.52e-08 | 6 |
abdominal cavity | 7.52e-08 | 6 |
visceral peritoneum | 7.52e-08 | 6 |
adipose tissue | 4.57e-07 | 14 |
multilaminar epithelium | 4.74e-07 | 83 |