FFCP PHASE1:Hg19::chr11:118443098..118443146,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=372 | |EntrezGene=372 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=649 | |HGNC=649 | ||
|TSSclassifier=strong | |||
|UniProt=B0YIW6,E9PEU4,Q6P1Q5,B4E1X2,P48444,B0YIW5 | |UniProt=B0YIW6,E9PEU4,Q6P1Q5,B4E1X2,P48444,B0YIW5 | ||
|association_with_transcript=0bp_to_ENST00000359415,ENST00000392859,ENST00000533452,ENST00000542521,NM_001142281,NM_001655,uc001ptq.2,uc009zag.2,uc009zah.2,uc010ryg.1_5end | |association_with_transcript=0bp_to_ENST00000359415,ENST00000392859,ENST00000533452,ENST00000542521,NM_001142281,NM_001655,uc001ptq.2,uc009zag.2,uc009zah.2,uc010ryg.1_5end | ||
|cluster_id=chr11:118443098..118443146,+ | |||
|description=CAGE_peak_1_at_ARCN1_5end | |description=CAGE_peak_1_at_ARCN1_5end | ||
|id=chr11:118443098..118443146,+ | |id=chr11:118443098..118443146,+ | ||
|ontology_enrichment_celltype=CL:0000048!2.33e-13!430;CL:0000055!3.86e-13!180;CL:0000723!4.34e-13!436;CL:0000034!3.58e-12!444;CL:0000057!4.49e-12!75;CL:0000548!1.57e-10!679;CL:0000004!1.57e-10!679;CL:0000255!1.57e-10!679;CL:0000012!6.85e-10!682;CL:0000359!1.16e-09!32;CL:0000680!1.35e-09!57;CL:0000056!1.35e-09!57;CL:0000355!1.35e-09!57;CL:0000192!4.26e-09!42;CL:0000514!4.26e-09!42;CL:0002371!5.59e-09!591;CL:0000187!8.35e-09!54;CL:0000144!1.22e-08!625;CL:0000134!8.34e-07!358 | |ontology_enrichment_celltype=CL:0000048!2.33e-13!430;CL:0000055!3.86e-13!180;CL:0000723!4.34e-13!436;CL:0000034!3.58e-12!444;CL:0000057!4.49e-12!75;CL:0000548!1.57e-10!679;CL:0000004!1.57e-10!679;CL:0000255!1.57e-10!679;CL:0000012!6.85e-10!682;CL:0000359!1.16e-09!32;CL:0000680!1.35e-09!57;CL:0000056!1.35e-09!57;CL:0000355!1.35e-09!57;CL:0000192!4.26e-09!42;CL:0000514!4.26e-09!42;CL:0002371!5.59e-09!591;CL:0000187!8.35e-09!54;CL:0000144!1.22e-08!625;CL:0000134!8.34e-07!358 | ||
|ontology_enrichment_celltype_v019=CL:0000359;5.16e-09;32!CL:0000134;9.44e-07;55 | |||
|ontology_enrichment_celltype_v019_2=CL:0000048,1.58e-14,427;CL:0000723,3.06e-14,433;CL:0000034,2.81e-13,441;CL:0000057,2.47e-12,76;CL:0000359,1.16e-09,32;CL:0000680,2.66e-09,58;CL:0000056,2.66e-09,58;CL:0000355,2.66e-09,58;CL:0000192,9.57e-09,43;CL:0000514,9.57e-09,43;CL:0000187,1.61e-08,55;CL:0000134,1.03e-07,354;CL:0002320,1.78e-07,361 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!3.28e-10!83;UBERON:0002329!3.28e-10!83;UBERON:0003077!3.28e-10!83;UBERON:0003059!3.28e-10!83;UBERON:0007282!3.28e-10!83;UBERON:0009618!3.28e-10!83;UBERON:0007285!3.28e-10!83;UBERON:0004290!6.44e-08!70;UBERON:0002385!2.53e-07!63;UBERON:0001015!2.53e-07!63;UBERON:0000383!2.53e-07!63;UBERON:0001134!2.60e-07!61;UBERON:0002036!2.60e-07!61;UBERON:0003082!2.60e-07!61;UBERON:0001637!3.26e-07!42;UBERON:0003509!3.26e-07!42;UBERON:0004572!3.26e-07!42;UBERON:0002204!3.43e-07!167;UBERON:0002384!4.14e-07!375;UBERON:0005256!4.44e-07!143;UBERON:0004573!4.51e-07!33;UBERON:0004571!4.51e-07!33;UBERON:0000486!9.87e-07!82;UBERON:0000926!9.90e-07!448;UBERON:0004120!9.90e-07!448;UBERON:0006603!9.90e-07!448 | |ontology_enrichment_uberon=UBERON:0000914!3.28e-10!83;UBERON:0002329!3.28e-10!83;UBERON:0003077!3.28e-10!83;UBERON:0003059!3.28e-10!83;UBERON:0007282!3.28e-10!83;UBERON:0009618!3.28e-10!83;UBERON:0007285!3.28e-10!83;UBERON:0004290!6.44e-08!70;UBERON:0002385!2.53e-07!63;UBERON:0001015!2.53e-07!63;UBERON:0000383!2.53e-07!63;UBERON:0001134!2.60e-07!61;UBERON:0002036!2.60e-07!61;UBERON:0003082!2.60e-07!61;UBERON:0001637!3.26e-07!42;UBERON:0003509!3.26e-07!42;UBERON:0004572!3.26e-07!42;UBERON:0002204!3.43e-07!167;UBERON:0002384!4.14e-07!375;UBERON:0005256!4.44e-07!143;UBERON:0004573!4.51e-07!33;UBERON:0004571!4.51e-07!33;UBERON:0000486!9.87e-07!82;UBERON:0000926!9.90e-07!448;UBERON:0004120!9.90e-07!448;UBERON:0006603!9.90e-07!448 | ||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002384,4.98e-08,371;UBERON:0002204,6.47e-08,167;UBERON:0000926,8.63e-08,315;UBERON:0004120,8.63e-08,315;UBERON:0006603,8.63e-08,315;UBERON:0002329,1.07e-07,71;UBERON:0003059,1.07e-07,71;UBERON:0007282,1.07e-07,71;UBERON:0004290,1.07e-07,71;UBERON:0009618,1.07e-07,71;UBERON:0007524,2.31e-07,73;UBERON:0003077,2.64e-07,72;UBERON:0007285,2.64e-07,72;UBERON:0003102,2.95e-07,99;UBERON:0001637,3.26e-07,42;UBERON:0003509,3.26e-07,42;UBERON:0004572,3.26e-07,42;UBERON:0002385,4.20e-07,64;UBERON:0001015,4.20e-07,64;UBERON:0000383,4.20e-07,64;UBERON:0001134,4.36e-07,62;UBERON:0002036,4.36e-07,62;UBERON:0003082,4.36e-07,62;UBERON:0004573,4.51e-07,33;UBERON:0004571,4.51e-07,33 | |||
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| ||
|short_description=p1@ARCN1 | |short_description=p1@ARCN1 | ||
}} | }} |
Latest revision as of 00:38, 16 September 2015
Short description: | p1@ARCN1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_ARCN1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000359415, ENST00000392859, ENST00000533452, ENST00000542521, NM_001142281, NM_001655, uc001ptq.2, uc009zag.2, uc009zah.2, uc010ryg.1_5end |
EntrezGene: | ARCN1 |
HGNC: | 649 |
UniProt: | B0YIW6E9PEU4Q6P1Q5B4E1X2P48444B0YIW5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
multi fate stem cell | 1.58e-14 | 427 |
somatic stem cell | 3.06e-14 | 433 |
stem cell | 2.81e-13 | 441 |
fibroblast | 2.47e-12 | 76 |
vascular associated smooth muscle cell | 1.16e-09 | 32 |
muscle precursor cell | 2.66e-09 | 58 |
myoblast | 2.66e-09 | 58 |
multi-potent skeletal muscle stem cell | 2.66e-09 | 58 |
smooth muscle cell | 9.57e-09 | 43 |
smooth muscle myoblast | 9.57e-09 | 43 |
muscle cell | 1.61e-08 | 55 |
mesenchymal cell | 1.03e-07 | 354 |
connective tissue cell | 1.78e-07 | 361 |
Ontology term | p-value | n |
---|---|---|
connective tissue | 4.98e-08 | 371 |
musculoskeletal system | 6.47e-08 | 167 |
mesoderm | 8.63e-08 | 315 |
mesoderm-derived structure | 8.63e-08 | 315 |
presumptive mesoderm | 8.63e-08 | 315 |
somite | 1.07e-07 | 71 |
presomitic mesoderm | 1.07e-07 | 71 |
presumptive segmental plate | 1.07e-07 | 71 |
dermomyotome | 1.07e-07 | 71 |
trunk paraxial mesoderm | 1.07e-07 | 71 |
dense mesenchyme tissue | 2.31e-07 | 73 |
paraxial mesoderm | 2.64e-07 | 72 |
presumptive paraxial mesoderm | 2.64e-07 | 72 |
surface structure | 2.95e-07 | 99 |
artery | 3.26e-07 | 42 |
arterial blood vessel | 3.26e-07 | 42 |
arterial system | 3.26e-07 | 42 |
muscle tissue | 4.20e-07 | 64 |
musculature | 4.20e-07 | 64 |
musculature of body | 4.20e-07 | 64 |
skeletal muscle tissue | 4.36e-07 | 62 |
striated muscle tissue | 4.36e-07 | 62 |
myotome | 4.36e-07 | 62 |
systemic artery | 4.51e-07 | 33 |
systemic arterial system | 4.51e-07 | 33 |