FFCP PHASE1:Hg19::chr20:35580104..35580133,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr20:35580104..35580133,-
|short_description=p2@SAMHD1
|description=CAGE_peak_2_at_SAMHD1_5end
|association_with_transcript=0bp_to_ENST00000373694_5end
|Entre...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=25939 | |EntrezGene=25939 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=15925 | |HGNC=15925 | ||
|TSSclassifier=strong | |||
|UniProt=A6NDZ3 | |UniProt=A6NDZ3 | ||
|association_with_transcript=0bp_to_ENST00000373694_5end | |||
|cluster_id=chr20:35580104..35580133,- | |||
|coexpression_cluster_id=C936 | |||
|description=CAGE_peak_2_at_SAMHD1_5end | |||
|id=chr20:35580104..35580133,- | |||
|ontology_enrichment_celltype=CL:0002009!2.81e-28!65;CL:0002194!7.74e-28!63;CL:0000576!7.74e-28!63;CL:0000040!7.74e-28!63;CL:0000559!7.74e-28!63;CL:0000766!4.00e-27!76;CL:0000557!8.12e-27!71;CL:0002087!1.77e-26!119;CL:0000738!3.82e-26!140;CL:0000839!1.85e-23!70;CL:0002031!2.95e-23!124;CL:0002057!6.51e-22!42;CL:0000860!9.50e-21!45;CL:0000037!7.67e-18!172;CL:0000566!7.67e-18!172;CL:0002032!4.03e-16!165;CL:0000837!4.03e-16!165;CL:0000988!8.07e-15!182;CL:0000763!4.16e-14!112;CL:0000049!4.16e-14!112;CL:0000791!3.54e-09!18;CL:0000789!3.54e-09!18;CL:0002420!3.54e-09!18;CL:0002419!3.54e-09!18;CL:0000790!3.54e-09!18;CL:0002393!8.76e-07!9;CL:0002397!8.76e-07!9 | |||
|ontology_enrichment_celltype_v019=CL:0000576;2.68e-16;48!CL:0000473;5.41e-16;39!CL:0000234;5.41e-16;39!CL:0000860;3.67e-15;33!CL:0002057;3.67e-15;33!CL:0000766;2.76e-12;69!CL:0000791;3.14e-09;18!CL:0000789;3.14e-09;18!CL:0002419;3.14e-09;18!CL:0002087;4.67e-08;104 | |||
|ontology_enrichment_celltype_v019_2=CL:0002009,2.10e-30,61;CL:0002194,5.36e-30,59;CL:0000576,5.36e-30,59;CL:0000040,5.36e-30,59;CL:0000559,5.36e-30,59;CL:0000766,6.98e-29,72;CL:0000557,1.13e-28,67;CL:0002087,1.04e-27,115;CL:0000738,3.13e-27,136;CL:0000473,8.57e-26,48;CL:0000234,8.57e-26,48;CL:0000839,4.59e-25,66;CL:0002031,2.82e-24,120;CL:0000860,6.40e-22,42;CL:0002057,6.40e-22,42;CL:0000037,1.50e-18,168;CL:0002032,8.98e-17,161;CL:0000837,8.98e-17,161;CL:0000988,2.42e-15,177;CL:0000763,7.88e-15,108;CL:0000049,7.88e-15,108;CL:0000791,3.52e-09,18;CL:0000789,3.52e-09,18;CL:0002420,3.52e-09,18;CL:0002419,3.52e-09,18;CL:0000790,3.52e-09,18;CL:0002393,8.72e-07,9;CL:0002397,8.72e-07,9 | |||
|ontology_enrichment_development_v019=CL:0002057;7.17e-16;42!CL:0000790;3.14e-09;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!1.19e-29!102;UBERON:0003061!1.19e-29!102;UBERON:0002193!1.89e-29!112;UBERON:0002371!2.02e-23!80;UBERON:0002405!1.41e-20!115;UBERON:0007023!3.79e-20!115;UBERON:0001474!3.33e-19!86;UBERON:0004765!2.76e-17!101;UBERON:0001434!2.76e-17!101;UBERON:0002204!1.17e-09!167;UBERON:0003081!2.64e-08!216 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,4.36e-31,98;UBERON:0003061,4.36e-31,98;UBERON:0002193,9.39e-31,108;UBERON:0002405,2.62e-26,93;UBERON:0002371,6.92e-25,76;UBERON:0001474,2.49e-20,82;UBERON:0007023,6.07e-20,114;UBERON:0004765,5.43e-19,90;UBERON:0001434,4.07e-18,100;UBERON:0003081,2.29e-10,203;UBERON:0002204,2.96e-10,167;UBERON:0000926,6.35e-08,315;UBERON:0004120,6.35e-08,315;UBERON:0006603,6.35e-08,315 | |||
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| ||
|short_description=p2@SAMHD1 | |||
}} | }} |
Latest revision as of 00:29, 16 September 2015
Short description: | p2@SAMHD1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_SAMHD1_5end |
Coexpression cluster: | C936_CD4_CD14_granulocyte_CD14CD16_CD8_Dendritic_Hair |
Association with transcript: | 0bp_to_ENST00000373694_5end |
EntrezGene: | SAMHD1 |
HGNC: | 15925 |
UniProt: | A6NDZ3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
macrophage dendritic cell progenitor | 2.10e-30 | 61 |
monopoietic cell | 5.36e-30 | 59 |
monocyte | 5.36e-30 | 59 |
monoblast | 5.36e-30 | 59 |
promonocyte | 5.36e-30 | 59 |
myeloid leukocyte | 6.98e-29 | 72 |
granulocyte monocyte progenitor cell | 1.13e-28 | 67 |
nongranular leukocyte | 1.04e-27 | 115 |
leukocyte | 3.13e-27 | 136 |
defensive cell | 8.57e-26 | 48 |
phagocyte | 8.57e-26 | 48 |
myeloid lineage restricted progenitor cell | 4.59e-25 | 66 |
hematopoietic lineage restricted progenitor cell | 2.82e-24 | 120 |
classical monocyte | 6.40e-22 | 42 |
CD14-positive, CD16-negative classical monocyte | 6.40e-22 | 42 |
hematopoietic stem cell | 1.50e-18 | 168 |
hematopoietic oligopotent progenitor cell | 8.98e-17 | 161 |
hematopoietic multipotent progenitor cell | 8.98e-17 | 161 |
hematopoietic cell | 2.42e-15 | 177 |
myeloid cell | 7.88e-15 | 108 |
common myeloid progenitor | 7.88e-15 | 108 |
mature alpha-beta T cell | 3.52e-09 | 18 |
alpha-beta T cell | 3.52e-09 | 18 |
immature T cell | 3.52e-09 | 18 |
mature T cell | 3.52e-09 | 18 |
immature alpha-beta T cell | 3.52e-09 | 18 |
intermediate monocyte | 8.72e-07 | 9 |
CD14-positive, CD16-positive monocyte | 8.72e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 4.36e-31 | 98 |
blood island | 4.36e-31 | 98 |
hemolymphoid system | 9.39e-31 | 108 |
immune system | 2.62e-26 | 93 |
bone marrow | 6.92e-25 | 76 |
bone element | 2.49e-20 | 82 |
adult organism | 6.07e-20 | 114 |
skeletal element | 5.43e-19 | 90 |
skeletal system | 4.07e-18 | 100 |
lateral plate mesoderm | 2.29e-10 | 203 |
musculoskeletal system | 2.96e-10 | 167 |
mesoderm | 6.35e-08 | 315 |
mesoderm-derived structure | 6.35e-08 | 315 |
presumptive mesoderm | 6.35e-08 | 315 |