FFCP PHASE1:Hg19::chr20:35580068..35580094,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=25939 | |EntrezGene=25939 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=15925 | |HGNC=15925 | ||
|TSSclassifier=strong | |||
|UniProt=A6NDZ3 | |UniProt=A6NDZ3 | ||
|association_with_transcript=16bp_to_ENST00000373694_5end | |association_with_transcript=16bp_to_ENST00000373694_5end | ||
|cluster_id=chr20:35580068..35580094,- | |||
|coexpression_cluster_id=C936 | |||
|description=CAGE_peak_1_at_SAMHD1_5end | |description=CAGE_peak_1_at_SAMHD1_5end | ||
|id=chr20:35580068..35580094,- | |id=chr20:35580068..35580094,- | ||
|ontology_enrichment_celltype=CL:0002087!3.24e-26!119;CL:0000738!7.70e-25!140;CL:0002009!4.42e-24!65;CL:0002194!1.23e-23!63;CL:0000576!1.23e-23!63;CL:0000040!1.23e-23!63;CL:0000559!1.23e-23!63;CL:0000557!2.36e-22!71;CL:0000766!3.50e-22!76;CL:0002031!5.42e-22!124;CL:0000839!3.57e-19!70;CL:0002057!2.12e-18!42;CL:0000860!2.74e-18!45;CL:0000037!4.13e-16!172;CL:0000566!4.13e-16!172;CL:0002032!1.29e-14!165;CL:0000837!1.29e-14!165;CL:0000988!8.23e-14!182;CL:0000791!8.92e-11!18;CL:0000789!8.92e-11!18;CL:0002420!8.92e-11!18;CL:0002419!8.92e-11!18;CL:0000790!8.92e-11!18;CL:0000763!1.40e-10!112;CL:0000049!1.40e-10!112;CL:0000625!5.39e-07!11 | |ontology_enrichment_celltype=CL:0002087!3.24e-26!119;CL:0000738!7.70e-25!140;CL:0002009!4.42e-24!65;CL:0002194!1.23e-23!63;CL:0000576!1.23e-23!63;CL:0000040!1.23e-23!63;CL:0000559!1.23e-23!63;CL:0000557!2.36e-22!71;CL:0000766!3.50e-22!76;CL:0002031!5.42e-22!124;CL:0000839!3.57e-19!70;CL:0002057!2.12e-18!42;CL:0000860!2.74e-18!45;CL:0000037!4.13e-16!172;CL:0000566!4.13e-16!172;CL:0002032!1.29e-14!165;CL:0000837!1.29e-14!165;CL:0000988!8.23e-14!182;CL:0000791!8.92e-11!18;CL:0000789!8.92e-11!18;CL:0002420!8.92e-11!18;CL:0002419!8.92e-11!18;CL:0000790!8.92e-11!18;CL:0000763!1.40e-10!112;CL:0000049!1.40e-10!112;CL:0000625!5.39e-07!11 | ||
|ontology_enrichment_celltype_v019=CL:0000576;1.25e-13;48!CL:0000473;3.00e-13;39!CL:0000234;3.00e-13;39!CL:0000860;1.94e-12;33!CL:0002057;1.94e-12;33!CL:0000791;8.62e-11;18!CL:0000789;8.62e-11;18!CL:0002419;8.62e-11;18!CL:0000766;5.27e-10;69!CL:0002087;8.72e-08;104!CL:0000625;5.38e-07;11 | |||
|ontology_enrichment_celltype_v019_2=CL:0002087,7.75e-27,115;CL:0000738,2.55e-25,136;CL:0002009,3.07e-25,61;CL:0002194,8.18e-25,59;CL:0000576,8.18e-25,59;CL:0000040,8.18e-25,59;CL:0000559,8.18e-25,59;CL:0000557,2.64e-23,67;CL:0000766,4.75e-23,72;CL:0002031,1.85e-22,120;CL:0000473,1.12e-21,48;CL:0000234,1.12e-21,48;CL:0000839,5.74e-20,66;CL:0000860,2.12e-18,42;CL:0002057,2.12e-18,42;CL:0000037,2.56e-16,168;CL:0002032,8.42e-15,161;CL:0000837,8.42e-15,161;CL:0000988,6.57e-14,177;CL:0000763,8.86e-11,108;CL:0000049,8.86e-11,108;CL:0000791,8.91e-11,18;CL:0000789,8.91e-11,18;CL:0002420,8.91e-11,18;CL:0002419,8.91e-11,18;CL:0000790,8.91e-11,18;CL:0000625,5.39e-07,11 | |||
|ontology_enrichment_development_v019=CL:0002057;2.79e-13;42!CL:0000790;8.62e-11;18 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002193!8.47e-27!112;UBERON:0002390!1.95e-25!102;UBERON:0003061!1.95e-25!102;UBERON:0002405!1.73e-19!115;UBERON:0002371!9.47e-19!80;UBERON:0001474!8.89e-16!86;UBERON:0004765!1.11e-13!101;UBERON:0001434!1.11e-13!101;UBERON:0007023!1.03e-12!115;UBERON:0003081!1.25e-07!216;UBERON:0002204!1.80e-07!167 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002193,1.89e-27,108;UBERON:0002390,3.92e-26,98;UBERON:0003061,3.92e-26,98;UBERON:0002405,1.33e-22,93;UBERON:0002371,2.04e-19,76;UBERON:0001474,2.87e-16,82;UBERON:0004765,2.38e-15,90;UBERON:0001434,5.74e-14,100;UBERON:0007023,1.33e-12,114;UBERON:0003081,1.16e-08,203;UBERON:0002204,1.16e-07,167 | |||
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| ||
|short_description=p1@SAMHD1 | |short_description=p1@SAMHD1 | ||
}} | }} |
Latest revision as of 00:28, 16 September 2015
Short description: | p1@SAMHD1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SAMHD1_5end |
Coexpression cluster: | C936_CD4_CD14_granulocyte_CD14CD16_CD8_Dendritic_Hair |
Association with transcript: | 16bp_to_ENST00000373694_5end |
EntrezGene: | SAMHD1 |
HGNC: | 15925 |
UniProt: | A6NDZ3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
nongranular leukocyte | 7.75e-27 | 115 |
leukocyte | 2.55e-25 | 136 |
macrophage dendritic cell progenitor | 3.07e-25 | 61 |
monopoietic cell | 8.18e-25 | 59 |
monocyte | 8.18e-25 | 59 |
monoblast | 8.18e-25 | 59 |
promonocyte | 8.18e-25 | 59 |
granulocyte monocyte progenitor cell | 2.64e-23 | 67 |
myeloid leukocyte | 4.75e-23 | 72 |
hematopoietic lineage restricted progenitor cell | 1.85e-22 | 120 |
defensive cell | 1.12e-21 | 48 |
phagocyte | 1.12e-21 | 48 |
myeloid lineage restricted progenitor cell | 5.74e-20 | 66 |
classical monocyte | 2.12e-18 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.12e-18 | 42 |
hematopoietic stem cell | 2.56e-16 | 168 |
hematopoietic oligopotent progenitor cell | 8.42e-15 | 161 |
hematopoietic multipotent progenitor cell | 8.42e-15 | 161 |
hematopoietic cell | 6.57e-14 | 177 |
myeloid cell | 8.86e-11 | 108 |
common myeloid progenitor | 8.86e-11 | 108 |
mature alpha-beta T cell | 8.91e-11 | 18 |
alpha-beta T cell | 8.91e-11 | 18 |
immature T cell | 8.91e-11 | 18 |
mature T cell | 8.91e-11 | 18 |
immature alpha-beta T cell | 8.91e-11 | 18 |
CD8-positive, alpha-beta T cell | 5.39e-07 | 11 |
Ontology term | p-value | n |
---|---|---|
hemolymphoid system | 1.89e-27 | 108 |
hematopoietic system | 3.92e-26 | 98 |
blood island | 3.92e-26 | 98 |
immune system | 1.33e-22 | 93 |
bone marrow | 2.04e-19 | 76 |
bone element | 2.87e-16 | 82 |
skeletal element | 2.38e-15 | 90 |
skeletal system | 5.74e-14 | 100 |
adult organism | 1.33e-12 | 114 |
lateral plate mesoderm | 1.16e-08 | 203 |
musculoskeletal system | 1.16e-07 | 167 |