FFCP PHASE1:Hg19::chr10:103880178..103880208,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr10:103880178..103880208,- to FFCP PHASE1:Hg19::chr10:103880178..103880208,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=8861 | |EntrezGene=8861 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6532 | |HGNC=6532 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000490751_5end | |||
|cluster_id=chr10:103880178..103880208,- | |||
|description=CAGE_peak_5_at_LDB1_5end | |||
|id=chr10:103880178..103880208,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0006601;4.02e-07;82 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!7.32e-28!115;UBERON:0005743!4.53e-18!86;UBERON:0003075!5.95e-18!86;UBERON:0007284!5.95e-18!86;UBERON:0002346!9.78e-18!90;UBERON:0000073!3.96e-17!94;UBERON:0001016!3.96e-17!94;UBERON:0001017!8.65e-17!82;UBERON:0001049!2.62e-16!57;UBERON:0005068!2.62e-16!57;UBERON:0006241!2.62e-16!57;UBERON:0007135!2.62e-16!57;UBERON:0000955!7.86e-16!69;UBERON:0006238!7.86e-16!69;UBERON:0000924!3.46e-15!173;UBERON:0006601!3.46e-15!173;UBERON:0004121!3.98e-15!169;UBERON:0002616!1.33e-14!59;UBERON:0003056!2.56e-14!61;UBERON:0000033!1.83e-13!123;UBERON:0000153!4.10e-13!129;UBERON:0007811!4.10e-13!129;UBERON:0003080!6.06e-12!42;UBERON:0002780!1.09e-11!41;UBERON:0001890!1.09e-11!41;UBERON:0006240!1.09e-11!41;UBERON:0001893!1.54e-10!34;UBERON:0002020!1.60e-10!34;UBERON:0003528!1.60e-10!34;UBERON:0000064!1.71e-10!219;UBERON:0002791!2.58e-10!33;UBERON:0001869!1.82e-09!32;UBERON:0000475!6.43e-09!365;UBERON:0000062!2.36e-08!511;UBERON:0004111!1.85e-07!241;UBERON:0000025!5.28e-07!194;UBERON:0002619!7.17e-07!22 | |||
|ontology_enrichment_uberon_v019=UBERON:0003528;2.51e-09;34!UBERON:0002020;2.51e-09;34!UBERON:0000073;2.78e-09;53!UBERON:0002616;2.78e-09;53!UBERON:0002791;3.34e-09;32!UBERON:0001893;3.35e-09;34!UBERON:0002780;3.36e-09;41!UBERON:0001890;3.36e-09;41!UBERON:0001869;7.99e-09;32!UBERON:0001017;3.86e-08;75!UBERON:0007023;1.78e-07;114!UBERON:0000955;2.96e-07;68!UBERON:0001016;5.48e-07;83!UBERON:0002619;5.79e-07;22!UBERON:0000956;8.73e-07;25!UBERON:0000203;8.73e-07;25 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,1.53e-27,114;UBERON:0003075,1.89e-18,82;UBERON:0007284,1.89e-18,82;UBERON:0002346,3.39e-18,86;UBERON:0010371,1.14e-16,104;UBERON:0001017,1.15e-16,81;UBERON:0001049,3.12e-16,56;UBERON:0005068,3.12e-16,56;UBERON:0006241,3.12e-16,56;UBERON:0007135,3.12e-16,56;UBERON:0004121,6.84e-16,171;UBERON:0000924,6.84e-16,171;UBERON:0006601,6.84e-16,171;UBERON:0001016,9.41e-16,89;UBERON:0000955,1.05e-15,68;UBERON:0006238,1.05e-15,68;UBERON:0000073,5.41e-15,53;UBERON:0002616,5.41e-15,53;UBERON:0003056,9.66e-14,61;UBERON:0010314,4.18e-12,132;UBERON:0002780,7.51e-12,41;UBERON:0001890,7.51e-12,41;UBERON:0003080,7.51e-12,41;UBERON:0006240,7.51e-12,41;UBERON:0001893,1.06e-10,34;UBERON:0003528,1.11e-10,34;UBERON:0002020,1.11e-10,34;UBERON:0011216,5.26e-10,223;UBERON:0002791,5.69e-10,32;UBERON:0001869,1.28e-09,32;UBERON:0004111,2.15e-07,240;UBERON:0002619,5.23e-07,22;UBERON:0000025,8.53e-07,192 | |||
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| ||
|short_description=p5@LDB1 | |||
}} | }} |
Latest revision as of 00:08, 16 September 2015
Short description: | p5@LDB1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_LDB1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000490751_5end |
EntrezGene: | LDB1 |
HGNC: | 6532 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
adult organism | 1.53e-27 | 114 |
neural plate | 1.89e-18 | 82 |
presumptive neural plate | 1.89e-18 | 82 |
neurectoderm | 3.39e-18 | 86 |
ecto-epithelium | 1.14e-16 | 104 |
central nervous system | 1.15e-16 | 81 |
neural tube | 3.12e-16 | 56 |
neural rod | 3.12e-16 | 56 |
future spinal cord | 3.12e-16 | 56 |
neural keel | 3.12e-16 | 56 |
ectoderm-derived structure | 6.84e-16 | 171 |
ectoderm | 6.84e-16 | 171 |
presumptive ectoderm | 6.84e-16 | 171 |
nervous system | 9.41e-16 | 89 |
brain | 1.05e-15 | 68 |
future brain | 1.05e-15 | 68 |
regional part of nervous system | 5.41e-15 | 53 |
regional part of brain | 5.41e-15 | 53 |
pre-chordal neural plate | 9.66e-14 | 61 |
structure with developmental contribution from neural crest | 4.18e-12 | 132 |
regional part of forebrain | 7.51e-12 | 41 |
forebrain | 7.51e-12 | 41 |
anterior neural tube | 7.51e-12 | 41 |
future forebrain | 7.51e-12 | 41 |
telencephalon | 1.06e-10 | 34 |
brain grey matter | 1.11e-10 | 34 |
gray matter | 1.11e-10 | 34 |
organ system subdivision | 5.26e-10 | 223 |
regional part of telencephalon | 5.69e-10 | 32 |
cerebral hemisphere | 1.28e-09 | 32 |
anatomical conduit | 2.15e-07 | 240 |
regional part of cerebral cortex | 5.23e-07 | 22 |
tube | 8.53e-07 | 192 |