FFCP PHASE1:Hg19::chr10:103880075..103880177,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=8861 | |EntrezGene=8861 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6532 | |HGNC=6532 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=27bp_to_ENST00000490751_5end | |association_with_transcript=27bp_to_ENST00000490751_5end | ||
|cluster_id=chr10:103880075..103880177,- | |||
|description=CAGE_peak_1_at_LDB1_5end | |description=CAGE_peak_1_at_LDB1_5end | ||
|id=chr10:103880075..103880177,- | |id=chr10:103880075..103880177,- | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019= | |ontology_enrichment_celltype_v019= | ||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
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|ontology_enrichment_uberon_v019=UBERON:0002619;3.12e-13;22!UBERON:0001893;5.10e-13;34!UBERON:0001869;7.36e-13;32!UBERON:0001950;8.40e-13;20!UBERON:0002791;1.18e-12;32!UBERON:0003528;3.10e-12;34!UBERON:0002020;3.10e-12;34!UBERON:0002780;8.10e-12;41!UBERON:0001890;8.10e-12;41!UBERON:0000073;1.90e-11;53!UBERON:0002616;1.90e-11;53!UBERON:0000956;7.45e-11;25!UBERON:0000203;7.45e-11;25!UBERON:0001017;2.22e-10;75!UBERON:0000955;1.28e-09;68!UBERON:0001016;1.06e-08;83!UBERON:0007023;7.83e-08;114 | |ontology_enrichment_uberon_v019=UBERON:0002619;3.12e-13;22!UBERON:0001893;5.10e-13;34!UBERON:0001869;7.36e-13;32!UBERON:0001950;8.40e-13;20!UBERON:0002791;1.18e-12;32!UBERON:0003528;3.10e-12;34!UBERON:0002020;3.10e-12;34!UBERON:0002780;8.10e-12;41!UBERON:0001890;8.10e-12;41!UBERON:0000073;1.90e-11;53!UBERON:0002616;1.90e-11;53!UBERON:0000956;7.45e-11;25!UBERON:0000203;7.45e-11;25!UBERON:0001017;2.22e-10;75!UBERON:0000955;1.28e-09;68!UBERON:0001016;1.06e-08;83!UBERON:0007023;7.83e-08;114 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,1.84e-28,114;UBERON:0001017,4.13e-21,81;UBERON:0001049,1.15e-20,56;UBERON:0005068,1.15e-20,56;UBERON:0006241,1.15e-20,56;UBERON:0007135,1.15e-20,56;UBERON:0000955,1.72e-20,68;UBERON:0006238,1.72e-20,68;UBERON:0000073,5.25e-20,53;UBERON:0002616,5.25e-20,53;UBERON:0001016,7.76e-20,89;UBERON:0003075,2.48e-18,82;UBERON:0007284,2.48e-18,82;UBERON:0002346,7.71e-18,86;UBERON:0002780,7.01e-16,41;UBERON:0001890,7.01e-16,41;UBERON:0003080,7.01e-16,41;UBERON:0006240,7.01e-16,41;UBERON:0001893,4.37e-15,34;UBERON:0010371,8.80e-15,104;UBERON:0001869,3.25e-14,32;UBERON:0003056,3.91e-14,61;UBERON:0003528,4.13e-14,34;UBERON:0002020,4.13e-14,34;UBERON:0002791,6.93e-14,32;UBERON:0004121,1.13e-13,171;UBERON:0000924,1.13e-13,171;UBERON:0006601,1.13e-13,171;UBERON:0002619,3.33e-13,22;UBERON:0001950,9.04e-13,20;UBERON:0000956,9.31e-11,25;UBERON:0000203,9.31e-11,25;UBERON:0010314,1.11e-08,132 | |||
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| ||
|short_description=p1@LDB1 | |short_description=p1@LDB1 | ||
}} | }} |
Latest revision as of 00:07, 16 September 2015
Short description: | p1@LDB1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_LDB1_5end |
Coexpression cluster: | NA |
Association with transcript: | 27bp_to_ENST00000490751_5end |
EntrezGene: | LDB1 |
HGNC: | 6532 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
adult organism | 1.84e-28 | 114 |
central nervous system | 4.13e-21 | 81 |
neural tube | 1.15e-20 | 56 |
neural rod | 1.15e-20 | 56 |
future spinal cord | 1.15e-20 | 56 |
neural keel | 1.15e-20 | 56 |
brain | 1.72e-20 | 68 |
future brain | 1.72e-20 | 68 |
regional part of nervous system | 5.25e-20 | 53 |
regional part of brain | 5.25e-20 | 53 |
nervous system | 7.76e-20 | 89 |
neural plate | 2.48e-18 | 82 |
presumptive neural plate | 2.48e-18 | 82 |
neurectoderm | 7.71e-18 | 86 |
regional part of forebrain | 7.01e-16 | 41 |
forebrain | 7.01e-16 | 41 |
anterior neural tube | 7.01e-16 | 41 |
future forebrain | 7.01e-16 | 41 |
telencephalon | 4.37e-15 | 34 |
ecto-epithelium | 8.80e-15 | 104 |
cerebral hemisphere | 3.25e-14 | 32 |
pre-chordal neural plate | 3.91e-14 | 61 |
brain grey matter | 4.13e-14 | 34 |
gray matter | 4.13e-14 | 34 |
regional part of telencephalon | 6.93e-14 | 32 |
ectoderm-derived structure | 1.13e-13 | 171 |
ectoderm | 1.13e-13 | 171 |
presumptive ectoderm | 1.13e-13 | 171 |
regional part of cerebral cortex | 3.33e-13 | 22 |
neocortex | 9.04e-13 | 20 |
cerebral cortex | 9.31e-11 | 25 |
pallium | 9.31e-11 | 25 |
structure with developmental contribution from neural crest | 1.11e-08 | 132 |